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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008379 ID=TCONS_00008379|Name=TCONS_00008379|organism=Clytia hemisphaerica|type=transcript|length=1951bp GGTGAAAGAATAACATTATGAGAACTTCTCAaagtttattttgaccgtac ACACTCTTGACTTTTGAGCAAAGCAATAGTCTAGTGAGcacctacatgtt tttttttataagcaagtgtctgcccctacatcaggctcgcattatgctta gcattctattgttctcaaacaatagagcaaTTGTTTAGGTATCCAAAACc tgcgtatgcttataaacgttatgcttataaaagaaaaaacatgttctcag tttttaattaattttgtcaTCGTACAAGTCTAGCTTTAAATGAGCAATAG TTCGAAATAAAACAATAATCTCAATCTCAAACTAAACCACATAGAATTCC AACATCGATTTAACATTAAGAGGTATTTCATAATCAAAATCTTTCTTCTA ATTCGAAACAGTACAAAGTAAATGAAAGGTCTGAGTGGGccgagaaattt ttcaaagtcatAATTAAAAGCCGGGGGAAATTTTCAAAGACTTAATTAGG GCAAGAGGGCTTTAAGATATCGGAGGATATGCCCGTATTCAAGGAAGTTG ACAGTAGTTGTAATTTAACCTTTGTTCACATGCCAACATGTTAGCGGAAG TATTTTGTGGTACGGTAATTAAATACCGGAAGCGATCTTCAGCAATTTGA TGATAAATTCTCTGCTACACATCATTTTGAATGAACTTTTAAAGTCAATG AAAACAATAAGGGAATATTTATTTCTGGTCTTGAAAGTTGAATTTAGTTT AGNATGAAAACAATAAGGGAATATTTCATTCTGGTCTTGAAAGTTGAATT TAGTTTAGAATCAAGGACGAGTTCATTTCTAAAGAAAACAACTGGGTCAG ACAATACCGTGAGATGAGATTAGAAACCGATCGAGCGAACAAACCAAGTG AACACAAACAcaatgaaagaaaagaaataacaTTATGACAAAACAAAATA TCACATATCCTGTCTTTAACCAAATAAGGATGAAATGTTTATTGAATTAC ATAGCCAGAAGAAAATATCGATGTTTGGTCATCTCTGTTTAAACTTAGAT GGATGGATGTCAATTCTCGTCATTGATTGGCTTaaacttggtcacatgac taaACGCTCCTATGATTGTCTCAAATTCTCATATAAAAGCAGTTACAGAA TTTCGAAGAGAACGAAACTTGAGAGAACCTGAAACTTCAATAAAAACTTT CAAGTAAGgtgataaatttttgaaatcagaaTGGAACACAGACACAAGGG GTTTGGATTTACCGCTGAGACAAAGAGAGCTatcGACAGCAAATACGACA TCGAGAGCGAACGTGAAGCTTTAGAATGGATTGATGCTGTTTTAGGAGGA AACTCTGGATTGAAAGGAGTCACAGGGAAAGATAATGTTCAACAAGCTCT TGCTAACGGAATCATCCTCTGCAATCTAATGAACGCTATCAACCCTGGAG CAGTCAAGAAAGTCCATCCAGAAAatgcaaacaaatttaaacatCAAGAA AACGTGCACAACTTTTTGGTGGGAAGCGAGGCATACGGATGCCATAGAGG CGATATTTTCCAAACAGTCGATCTGACGGAAGACCGAAACATGCCAGCCG TCATCAAAGGAATTCATACTCTCGGAAGAACCGCACAAAAGAACAACTTT AGCGGACCAACCATTGGCCCGAAAGTGTCAACACCCAACAAACGTGAATT CTCCGAGGAGCAAATGAGACATGGCCGTGTCCATGGAATTTAAAGACCTG ACATCAAAGCTCTCTTCGAGAACATCGGGCGGACATTATTGTCCGCACCA GAAGTGATATCTCTCCGCGCGGTAGAGCCAATATCATCTGTACATTTTGA CCATTCTTATACATACAACATCCTAATTTgtaaatattaaaaacattttt tttgttctaAGTTAAATAGAATTTTTACCACCATTGAAAAGGATATGTAT T Run BLAST on NCBI protein sequence of TCONS_00008379-protein >TCONS_00008379-protein ID=TCONS_00008379-protein|Name=TCONS_00008379-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MEHRHKGFGFTAETKRAIDSKYDIESEREALEWIDAVLGGNSGLKGVTGK DNVQQALANGIILCNLMNAINPGAVKKVHPENANKFKHQENVHNFLVGSE AYGCHRGDIFQTVDLTEDRNMPAVIKGIHTLGRTAQKNNFSGPTIGPKVS TPNKREFSEEQMRHGRVHGI Run BLAST on NCBI transcript from alignment at sc0000085:73734..77761+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008379 ID=TCONS_00008379|Name=TCONS_00008379|organism=Clytia hemisphaerica|type=transcript|length=4028bp|location=Sequence derived from alignment at sc0000085:73734..77761+ (Clytia hemisphaerica) GGTGAAAGAATAACATTATGAGAACTTCTCAaagtttattttgaccgtac
ACACTCTTGACTTTTGAGCAAAGCAATAGTCTAGTGAGcacctacatgtt
tttttttataagcaagtgtctgcccctacatcaggctcgcattatgctta
gcattctattgttctcaaacaatagagcaaTTGTTTAGGTATCCAAAACc
tgcgtatgcttataaacgttatgcttataaaagaaaaaacatgttctcag
tttttaattaattttgtcaTCGTACAAGTCTAGCTTTAAATGAGCAATAG
TTCGAAATAAAACAATAATCTCAATCTCAAACTAAACCACATAGAATTCC
AACATCGATTTAACATTAAGAGGTATTTCATAATCAAAATCTTTCTTCTA
ATTCGAAACAGTACAAAGTAAATGAAAGGTCTGAGTGGGccgagaaattt
ttcaaagtcatAATTAAAAGCCGGGGGAAATTTTCAAAGACTTAATTAGG
GCAAGAGGGCTTTAAGATATCGGAGGATATGCCCGTATTCAAGGAAGTTG
ACAGTAGTTGTAATTTAACCTTTGTTCACATGCCAACATGTTAGCGGAAG
TATTTTGTGGTACGGTAATTAAATACCGGAAGCGATCTTCAGCAATTTGA
TGATAAATTCTCTGCTACACATCATTTTGAATGAACTTTTAAAGTCAATG
AAAACAATAAGGGAATATTTATTTCTGGTCTTGAAAGTTGAATTTAGTTT
AGNATGAAAACAATAAGGGAATATTTCATTCTGGTCTTGAAAGTTGAATT
TAGTTTAGAATCAAGGACGAGTTCATTTCTAAAGAAAACAACTGGGTCAG
ACAATACCGTGAGATGAGATTAGAAACCGATCGAGCGAACAAACCAAGTG
AACACAAACAcaatgaaagaaaagaaataacaTTATGACAAAACAAAATA
TCACATATCCTGTCTTTAACCAAATAAGGATGAAATGTTTATTGAATTAC
ATAGCCAGAAGAAAATATCGATGTTTGGTCATCTCTGTTTAAACTTAGAT
GGATGGATGTCAATTCTCGTCATTGATTGGCTTaaacttggtcacatgac
taaACGCTCCTATGATTGTCTCAAATTCTCATATAAAAGCAGTTACAGAA
TTTCGAAGAGAACGAAACTTGAGAGAACCTGAAACTTCAATAAAAACTTT
CAAGTAAGgtgataaatttttgaaatcagaaTGGAACACAGACACAAGGG
GTTTGGATTTACCGCTGAGACAAAGAGAGCTGTAAGTAAAAGTCATTCAT
TTCcagcaacttttttttaattaaacatCACTCATTTATATTCACTTTCA
CATGGGTAAATGAGGCAAGGTTTTGCTTCAATCCAGGGACGTAGCCTGAG
TTGAGAATGTTCTACATACAGTCTATAAGTAACGTATTTTAatgggtttt
gtttttgaagcaTCCGATATTACTGGATGTTTTCACAGCCAAGGTCTCAT
CAAAGCAAAGTCTTTTATGGGAGCACTGAGACATTCAACTCACGTCACTT
GATTTGAACATCGGAATTTACCTGCATAAGGAGCTTAGAATTCTTGGAAG
GAATTACAGTACACGATATGGAGAATCGTTTCAATACTTTTCGCTTTACA
TTTGCGTTTTCCACACCTTATCTGTATCCAAACAGCAACATGATTTTTTA
CCAAATAAGTCGAAGGAAAGGATCTTGCTTATGCAACGGATATCAGAGTT
AATTTTGTCAACATTTAAATGATCTCCGTCTCATCTTATagcaaatattt
tatttgattgGTATTTGCATGTTTGCATAACTCTGTGAGTGATACTTTTC
GGATGAAAGATTCACAAATTCCTAAACTAAAATAGAAGGTGATGGTTGTA
ACATAGGAAAATCCTATGCAGAAAGCAACCAATAAGAAACTTTCCTTGGC
TTAAGCTAGCTGAAGCTAAAGTAGCCCTTGTCTTGATGCATTTTCCACTA
GTCATTATAAATCCCAgtaaatttcttcatttttagatcGACAGCAAATA
CGACATCGAGAGCGAACGTGAAGCTTTAGAATGGATTGATGCTGTTTTAG
GAGGAAACTCTGGATTGAAAGGAGTCACAGGGAAAGATAATGTTCAACAA
GCTCTTGCTAACGGAATCATCCTCTGCAAGTAAgccattctttttttata
tttatgcaCCTTTGAGGACGGTGGAGTAACTGAAGCGTTTTGTAATATAA
TTgacagttttgacccgcaaaaaatcgaggacggtaaaattTACTAAGAT
CAAGACAAATCAGAAAGAAGCTCATCGTATCCGTCGCAGAAACACACAGA
TTTATTAACTGGTTGAAGTAAAAGCCGGTCAATACAAGAAAATGcgctat
tttgattggttctctAGCGGTCAATATAGTACGGTAAAGACCACTTCAGT
GCTATGGTCAAACTGACGatgattttaaaaagagaaaGCTCGGTCTGTAC
TTCGACTGCGGTCAATATTTTACTGTATTGACCTCCAAACCagttattat
tgtattaatatAAACTCTCTACATTCACCTTTAAAGCAGTCTCTTAGTTC
AACGTCTAATTTGTTACTTTTGAGAAACTCCAAAAACTAATGACTTTTAG
ACATAAGTGGTTGTTAGACAGGGGTGGGTGTATTTTGAGTATTATCCGCC
ATCAAAGCTCTACGTAATCCTCAGAACTCTTAGTTCCATCACCAACGAca
ttggttgaaatttaatCCAGAAATATATAGAAATATCAGCACGAGTTTAA
AAATGACCATAATTGATTTATTCTATTTCTAGTCTAATGAACGCTATCAA
CCCTGGAGCAGTCAAGAAAGTCCATCCAGAAAatgcaaacaaatttaaac
atGTAAGTTATTTATATGACAAGCTACTTCTATTCGTGTTTCTTGCATTG
GAGGATGAAGATGATGCATTTGACGGATGAAAATTAACTCAAAATAGAAA
CGTGTGTATATGGAAATTTAAGTGAGGTCCTGTTGAAGGCAGATCATTAC
TTTCTCGAAGAAAGAGTTATTCTCAAGGAGATTCACACAATATGGAAAGA
ATTCCAGAAAGCTTGAACTCctgaaactttcttttacaGCAAGAAAACGT
GCACAACTTTTTGGTGGGAAGCGAGGCATACGGATGCCATAGAGGCGATA
TTTTCCAAACAGTCGATCTGACGGAAGACCGAAACATGCCAGCCGTCATC
AAAGGAATTCATACTCTCGGAAGAACCGTAAGaaaatttattctttttat
tCTGATTTGCAAACCTGGATGAGACCTTAGATGATGAGCGGTGACTGAAG
CTCTATAATACTTTCAGAGTACTTTCAAATTTTGTCAACCCAACAAAATA
CTTTCACTTGAGTTAGAGGCCAACTAGGCCAAAAATTAACCTTCTGTAGT
TTGTGAAAGTCCACCAGtggaaaaataatttcgaaTTAAGGCGTTAAGTG
ACTACTTCTAAAGTACTTAACTTTCACTGAAAGCAAAAGAAAGTCACCGA
AACGATTAAACGCTCAATCAACATACCAGTGTAGATTTATTTACAAACCA
GTAGAATTGATCTTTGTGGTTTCGGTCAATAAAATGTTACCCAATGCATA
TCTTTTGGAAGAGAAAAGTTGAAGGGAATTTTATTAATAGTCATATTTTC
AATTTACAGGCACAAAAGAACAACTTTAGCGGACCAACCATTGGCCCGAA
AGTGTCAACACCCAACAAACGTGAATTCTCCGAGGAGCAAATGAGACATG
GCCGTGTCCATGGAATTTAAAGACCTGACATCAAAGCTCTCTTCGAGAAC
ATCGGGCGGACATTATTGTCCGCACCAGAAGTGATATCTCTCCGCGCGGT
AGAGCCAATATCATCTGTACATTTTGACCATTCTTATACATACAACATCC
TAATTTgtaaatattaaaaacattttttttgttctaAGTTAAATAGAATT
TTTACCACCATTGAAAAGGATATGTATT Coding sequence (CDS) from alignment at sc0000085:73734..77761+ >TCONS_00008379 ID=TCONS_00008379|Name=TCONS_00008379|organism=Clytia hemisphaerica|type=CDS|length=2565bp|location=Sequence derived from alignment at sc0000085:73734..77761+ (Clytia hemisphaerica) aTGGAACACAGACACAAGGGGTTTGGATTTACCGCTGAGACAAAGAGAGC TatcGACAGCAAATACGACATCGAGAGCGAACGTGAAGCTTTAGAATGGA TTGATGCTGTTTTAGGAGGAAACTCTGGATTGAAAGGAGTCACAGGGAAA GATAATGTTCAACAAGCTCTTGCTAACGGAATCATCCTCTGCAATCTAAT GAACGCTATCAACCCTGGAGCAGTCAAGAAAGTCCATCCAGAAAatgcaa acaaatttaaacatCAAGAAAACGTGCACAACTTTTTGGTGGGAAGCGAG GCATACGGATGCCATAGAGGCGATATTTTCCAAACAGTCGATCTGACGGA AGACCGAAACATGCCAGCCGTCATCAAAGGAATTCATACTCTCGGAAGAA CCGCACAAAAGAACAACTTTAGCGGACCAACCATTGGCCCGAAAGTGTCA ACACCCAACAAACGTGAATTCTCCGAGGAGCAAATGAGACATGGCCGTGT CCATGGAATTTAAaTGGAACACAGACACAAGGGGTTTGGATTTACCGCTG AGACAAAGAGAGCTatcGACAGCAAATACGACATCGAGAGCGAACGTGAA GCTTTAGAATGGATTGATGCTGTTTTAGGAGGAAACTCTGGATTGAAAGG AGTCACAGGGAAAGATAATGTTCAACAAGCTCTTGCTAACGGAATCATCC TCTGCAATCTAATGAACGCTATCAACCCTGGAGCAGTCAAGAAAGTCCAT CCAGAAAatgcaaacaaatttaaacatCAAGAAAACGTGCACAACTTTTT GGTGGGAAGCGAGGCATACGGATGCCATAGAGGCGATATTTTCCAAACAG TCGATCTGACGGAAGACCGAAACATGCCAGCCGTCATCAAAGGAATTCAT ACTCTCGGAAGAACCGCACAAAAGAACAACTTTAGCGGACCAACCATTGG CCCGAAAGTGTCAACACCCAACAAACGTGAATTCTCCGAGGAGCAAATGA GACATGGCCGTGTCCATGGAATTTAAaTGGAACACAGACACAAGGGGTTT GGATTTACCGCTGAGACAAAGAGAGCTatcGACAGCAAATACGACATCGA GAGCGAACGTGAAGCTTTAGAATGGATTGATGCTGTTTTAGGAGGAAACT CTGGATTGAAAGGAGTCACAGGGAAAGATAATGTTCAACAAGCTCTTGCT AACGGAATCATCCTCTGCAATCTAATGAACGCTATCAACCCTGGAGCAGT CAAGAAAGTCCATCCAGAAAatgcaaacaaatttaaacatCAAGAAAACG TGCACAACTTTTTGGTGGGAAGCGAGGCATACGGATGCCATAGAGGCGAT ATTTTCCAAACAGTCGATCTGACGGAAGACCGAAACATGCCAGCCGTCAT CAAAGGAATTCATACTCTCGGAAGAACCGCACAAAAGAACAACTTTAGCG GACCAACCATTGGCCCGAAAGTGTCAACACCCAACAAACGTGAATTCTCC GAGGAGCAAATGAGACATGGCCGTGTCCATGGAATTTAAaTGGAACACAG ACACAAGGGGTTTGGATTTACCGCTGAGACAAAGAGAGCTatcGACAGCA AATACGACATCGAGAGCGAACGTGAAGCTTTAGAATGGATTGATGCTGTT TTAGGAGGAAACTCTGGATTGAAAGGAGTCACAGGGAAAGATAATGTTCA ACAAGCTCTTGCTAACGGAATCATCCTCTGCAATCTAATGAACGCTATCA ACCCTGGAGCAGTCAAGAAAGTCCATCCAGAAAatgcaaacaaatttaaa catCAAGAAAACGTGCACAACTTTTTGGTGGGAAGCGAGGCATACGGATG CCATAGAGGCGATATTTTCCAAACAGTCGATCTGACGGAAGACCGAAACA TGCCAGCCGTCATCAAAGGAATTCATACTCTCGGAAGAACCGCACAAAAG AACAACTTTAGCGGACCAACCATTGGCCCGAAAGTGTCAACACCCAACAA ACGTGAATTCTCCGAGGAGCAAATGAGACATGGCCGTGTCCATGGAATTT AAaTGGAACACAGACACAAGGGGTTTGGATTTACCGCTGAGACAAAGAGA GCTatcGACAGCAAATACGACATCGAGAGCGAACGTGAAGCTTTAGAATG GATTGATGCTGTTTTAGGAGGAAACTCTGGATTGAAAGGAGTCACAGGGA AAGATAATGTTCAACAAGCTCTTGCTAACGGAATCATCCTCTGCAATCTA ATGAACGCTATCAACCCTGGAGCAGTCAAGAAAGTCCATCCAGAAAatgc aaacaaatttaaacatCAAGAAAACGTGCACAACTTTTTGGTGGGAAGCG AGGCATACGGATGCCATAGAGGCGATATTTTCCAAACAGTCGATCTGACG GAAGACCGAAACATGCCAGCCGTCATCAAAGGAATTCATACTCTCGGAAG AACCGCACAAAAGAACAACTTTAGCGGACCAACCATTGGCCCGAAAGTGT CAACACCCAACAAACGTGAATTCTCCGAGGAGCAAATGAGACATGGCCGT GTCCATGGAATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00008379-exon-sc0000085-1491911889:73734..75014 | TCONS_00008379-exon-sc0000085-1491911889:73734..75014 | Clytia hemisphaerica | exon |
TCONS_00008379-exon-sc0000085-1510915933:73734..75014 | TCONS_00008379-exon-sc0000085-1510915933:73734..75014 | Clytia hemisphaerica | exon |
TCONS_00008379-exon-sc0000085-1575043694:73734..75014 | TCONS_00008379-exon-sc0000085-1575043694:73734..75014 | Clytia hemisphaerica | exon |
TCONS_00008379-exon-sc0000085-1491911889:75770..75912 | TCONS_00008379-exon-sc0000085-1491911889:75770..75912 | Clytia hemisphaerica | exon |
TCONS_00008379-exon-sc0000085-1510915933:75770..75912 | TCONS_00008379-exon-sc0000085-1510915933:75770..75912 | Clytia hemisphaerica | exon |
TCONS_00008379-exon-sc0000085-1575043694:75770..75912 | TCONS_00008379-exon-sc0000085-1575043694:75770..75912 | Clytia hemisphaerica | exon |
TCONS_00008379-exon-sc0000085-1491911889:76566..76635 | TCONS_00008379-exon-sc0000085-1491911889:76566..76635 | Clytia hemisphaerica | exon |
TCONS_00008379-exon-sc0000085-1510915933:76566..76635 | TCONS_00008379-exon-sc0000085-1510915933:76566..76635 | Clytia hemisphaerica | exon |
TCONS_00008379-exon-sc0000085-1575043694:76566..76635 | TCONS_00008379-exon-sc0000085-1575043694:76566..76635 | Clytia hemisphaerica | exon |
TCONS_00008379-exon-sc0000085-1491911889:76873..77010 | TCONS_00008379-exon-sc0000085-1491911889:76873..77010 | Clytia hemisphaerica | exon |
TCONS_00008379-exon-sc0000085-1510915933:76873..77010 | TCONS_00008379-exon-sc0000085-1510915933:76873..77010 | Clytia hemisphaerica | exon |
TCONS_00008379-exon-sc0000085-1575043694:76873..77010 | TCONS_00008379-exon-sc0000085-1575043694:76873..77010 | Clytia hemisphaerica | exon |
TCONS_00008379-exon-sc0000085-1491911889:77443..77761 | TCONS_00008379-exon-sc0000085-1491911889:77443..77761 | Clytia hemisphaerica | exon |
TCONS_00008379-exon-sc0000085-1510915933:77443..77761 | TCONS_00008379-exon-sc0000085-1510915933:77443..77761 | Clytia hemisphaerica | exon |
TCONS_00008379-exon-sc0000085-1575043694:77443..77761 | TCONS_00008379-exon-sc0000085-1575043694:77443..77761 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000085 | supercontig | sc0000085:73734..77761 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00008379 vs. Swiss-Prot (Human)
Match: TAGL2 (Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3) HSP 1 Score: 102.834 bits (255), Expect = 1.635e-24 Identity = 61/173 (35.26%), Postives = 92/173 (53.18%), Query Frame = 1
Query: 1231 MEHRHKGFGFTAETKRAIDSKYDIESEREALEWIDAVLGGNSGLKGVTGKDNVQQALANGIILCNLMNAINP---GAVKKVHPENANKFKHQENVHNFLVGSEAYGCHRGDIFQTVDLTEDRNMPAVIKGIHTLGRTAQKNN---FSG-PTIGPKVSTPNKREFSEEQMRHGR 1728
M +R +G + E ++ I+ +YD + E+ ++WI + G + G++N Q L +G +LC L+NA+ P VKK+ FK E + FL +E YG + DIFQTVDL E +NM V + + LG A + FSG P PK S N R FS+ Q++ G+
Sbjct: 1 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVG-RPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTM-AFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGK 171
The following BLAST results are available for this feature:
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