TCONS_00008376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008376
Unique NameTCONS_00008376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008376 ID=TCONS_00008376|Name=TCONS_00008376|organism=Clytia hemisphaerica|type=transcript|length=437bp
tttagatGCAGAACAAATTATAAGGAGAATCATAAAATGAGGGAAATGAG
AAAAGCTGAGAAACAGAAAATGAATTTGATCACCCTTGCATTCATCAGGG
AACAAATTTCTATCTATAATGAGATTTTTAGAATGCAGGAATATATGGAG
TTCATCAGAGTGGAGTTGTATTTCAAATCAGCTCCAATAGCATTATACAT
TATGCCGTTAATACGGgtattttgaagatatttttttctttctgtgcCTG
CCGTTAGAATTTGTAAAAGTATTGTCGTTATGCTATAATCATAATACgcg
tttacaaaaatatacaactgGAAAGAGGCACACAGTATATTGCCACCcaa
attattttgtttcaacAAATTTACTTTTACTAATATATTGCTTGTTCCAT
TTGTTATACCTTTTCAGTGAATTAGAGGATGATCGAG
Run BLAST on NCBI

transcript from alignment at sc0000084:680717..681153

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008376 ID=TCONS_00008376|Name=TCONS_00008376|organism=Clytia hemisphaerica|type=transcript|length=437bp|location=Sequence derived from alignment at sc0000084:680717..681153 (Clytia hemisphaerica)
CTCGATCATCCTCTAATTCACTGAAAAGGTATAACAAATGGAACAAGCAA
TATATTAGTAAAAGTAAATTTgttgaaacaaaataatttgGGTGGCAATA
TACTGTGTGCCTCTTTCcagttgtatatttttgtaaacgcGTATTATGAT
TATAGCATAACGACAATACTTTTACAAATTCTAACGGCAGgcacagaaag
aaaaaaatatcttcaaaatacCCGTATTAACGGCATAATGTATAATGCTA
TTGGAGCTGATTTGAAATACAACTCCACTCTGATGAACTCCATATATTCC
TGCATTCTAAAAATCTCATTATAGATAGAAATTTGTTCCCTGATGAATGC
AAGGGTGATCAAATTCATTTTCTGTTTCTCAGCTTTTCTCATTTCCCTCA
TTTTATGATTCTCCTTATAATTTGTTCTGCatctaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004704XLOC_004704Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008376-exon-sc0000084-1491911889:680717..681153TCONS_00008376-exon-sc0000084-1491911889:680717..681153Clytia hemisphaericaexon
TCONS_00008376-exon-sc0000084-1510915933:680717..681153TCONS_00008376-exon-sc0000084-1510915933:680717..681153Clytia hemisphaericaexon
TCONS_00008376-exon-sc0000084-1575043694:680717..681153TCONS_00008376-exon-sc0000084-1575043694:680717..681153Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:680717..681153 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.466812	0.455216	0.352366	0	1.46889	0.165819	0.600161	0.374576	1.96687	1.13693	0	0.103631	0.310462	0	0	0.0948208	0.350434	0.718368	0.165411	0.17309	0.300894	0.220148	0	0	0.167065	0.596407	1.49355	0.910832	0.518125	0.527888
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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