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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008367 ID=TCONS_00008367|Name=TCONS_00008367|organism=Clytia hemisphaerica|type=transcript|length=2219bp
ccagcggcacgtcacCGTCAGTCGTCAAGGTcaatgccccccccccgggc
ttcgTGTAGATTTCTGAGTACACCTACCAAGgacaataaaaaatatgaaa
actagCCTGTAGATATACCCTATAATTTCTTCTCttatatactgatggca
aaATGAATTAGTATGGTTTGGCCTGAAAGTTTTCTCCTGTCTTAATGAAA
ACAGGAgacttttcatattttgatttaatgaTGAGCGCGTGGTACTTCCA
TGATGACTATCAGAATTATAATGCAAAGGAACTGGGGACGAGTTTAAGGA
GACATTAATATCATACTAGGGAAATTTGGTCAGTAAAACGCCGGGAAAAC
TCCCACTAGAAGACACTAGTAGGCAGACAAACAAACAATAAGGCTAGAAA
TAAGTAGAGAGATAGAACGACAACGGCTATAAGAGTACTTTAACCTTCAA
GCAGACGCAACTCGTAAATATAATGTTCAACAAACGTCTATAATCAGACA
CCTTCAAATGCCGAACAGACACAACACATCATGTCCATACAACGTTCATC
TGATGTCGCTATATGATTACTATGGAACGTTGAATGGACATTTTGATGCT
TTGTATTCGTTTGGTATTTGAGAAGGAGGCTGATCTCCTATATAGAATTG
AATTTGACTTTCCATGAATTTCTGGGACAACGCCCACACCctgtaaataa
acaaacaaatacctcaatatcaaaaattttcgcTTGTTTATAATCCAGGA
AGGGACACAACTATCTTTCATAGGAAACGTCACGTAAATTAACTATGATT
AGCTTggcattttttacttttcaccTTTTGACCTTTAATTTTCTTTAGAG
TACCGCATTTCATAAGATTGTAACGCCGTTGACTTAACTACTTTTTCTAG
TCGGGTTGGCAGCCGATCAaaagtaacaaaagaaaatctttaataATGAG
GATCTAGCGTAATAATCTCAAAAACGatcttcaagaaattttaaaggttt
tatttttacataagtgtttcatatcagatacaTATAAGGGCGGTGTCTGC
CTATTATTATAATATGCTGATATAAGNTACAACGTTCATCTGATGTCGCT
ATATGATTACTATGGAACGTTGAATGGACATTTTGATGCTTTGTATTCGT
TTGGTATTTGAGAAGGAGGCTGATCTCCTATATAGAATTGAATTTGACTT
TCCATGAATTTCTGGGACAACGCCCACACCctgtaaataaacaaacaaat
acctcaatatcaaaaattttcgcTTGTTTATAATCCAGGAAGGGACACAA
CTATCTTTCATAGGAAACGTCACGTAAATTAACTATGATTAGCTTggcat
tttttacttttcaccTTTTGACCTTTAATTTTCTTTAGAGTACCGCATTT
CATAAGATTGTAACGCCGTTGACTTAACTACTTTTTCTAGTCGGGTTGGC
AGCCGATCAaaagtaacaaaagaaaatctttaataATGAGGATCTAGCGT
AATAATCTCAAAAACGatcttcaagaaattttaaaggttttatttttaca
taagtgtttcatatcagatacaTATAAGGGCGGTGTCTGCCTAttattat
attatgctgatatacccaaaaaaaggtttttcttttcctatttctggaac
aatcttgctccacatacgcgtcaattcaatgtgaaaaagcttgtgaatta
aaatttgacaagtaagcaaacgatatcagtcttatttaaaaacaaaacct
ttaagagttACTAGTAATACTGATTTTGCACTTTTACCCTACAACAAGTT
AAAAGTTTACCGGTTCAATTATTGATTTATATCATCCATCGAAAGTTCAT
TTAATCATTTAATGAAAGTCAGAAAAAGGTCAAGTATTGGCTATAAAGTA
TCATGATTTAATCCGAAAAATATAGCCACTGGTTCCAAAGTCTTACAATA
AAACGTGCCGGTGTGTTCGGGTGTTTCcgtagaaaagattacgtcattca
tAAAGAATCACGGTAGCTTAGAAATCAGTCGAAATTCCTGCTCAGACAAA
TGAAGTAAACAGGAATCTACCCTAGGAAGATTGTGGTTATCTAGACTATA
TCCGTTAAAGACTAATCGACGGGCGGATTTGACACAAATCAGCGGTAAAC
AGCGCTCACATATCACCGGTCATAAATTTAAAATGAATATTGTGTTAAAT
TATATCAACaatttccaaa Run BLAST on NCBI transcript from alignment at sc0000084:461773..463991 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008367 ID=TCONS_00008367|Name=TCONS_00008367|organism=Clytia hemisphaerica|type=transcript|length=2219bp|location=Sequence derived from alignment at sc0000084:461773..463991 (Clytia hemisphaerica)
tttggaaattGTTGATATAATTTAACACAATATTCATTTTAAATTTATGA
CCGGTGATATGTGAGCGCTGTTTACCGCTGATTTGTGTCAAATCCGCCCG
TCGATTAGTCTTTAACGGATATAGTCTAGATAACCACAATCTTCCTAGGG
TAGATTCCTGTTTACTTCATTTGTCTGAGCAGGAATTTCGACTGATTTCT
AAGCTACCGTGATTCTTTatgaatgacgtaatcttttctacgGAAACACC
CGAACACACCGGCACGTTTTATTGTAAGACTTTGGAACCAGTGGCTATAT
TTTTCGGATTAAATCATGATACTTTATAGCCAATACTTGACCTTTTTCTG
ACTTTCATTAAATGATTAAATGAACTTTCGATGGATGATATAAATCAATA
ATTGAACCGGTAAACTTTTAACTTGTTGTAGGGTAAAAGTGCAAAATCAG
TATTACTAGTaactcttaaaggttttgtttttaaataagactgatatcgt
ttgcttacttgtcaaattttaattcacaagctttttcacattgaattgac
gcgtatgtggagcaagattgttccagaaataggaaaagaaaaaccttttt
ttgggtatatcagcataatataataaTAGGCAGACACCGCCCTTATAtgt
atctgatatgaaacacttatgtaaaaataaaacctttaaaatttcttgaa
gatCGTTTTTGAGATTATTACGCTAGATCCTCATtattaaagattttctt
ttgttactttTGATCGGCTGCCAACCCGACTAGAAAAAGTAGTTAAGTCA
ACGGCGTTACAATCTTATGAAATGCGGTACTCTAAAGAAAATTAAAGGTC
AAAAggtgaaaagtaaaaaatgccAAGCTAATCATAGTTAATTTACGTGA
CGTTTCCTATGAAAGATAGTTGTGTCCCTTCCTGGATTATAAACAAgcga
aaatttttgatattgaggtatttgtttgtttatttacagGGTGTGGGCGT
TGTCCCAGAAATTCATGGAAAGTCAAATTCAATTCTATATAGGAGATCAG
CCTCCTTCTCAAATACCAAACGAATACAAAGCATCAAAATGTCCATTCAA
CGTTCCATAGTAATCATATAGCGACATCAGATGAACGTTGTANCTTATAT
CAGCATATTATAATAATAGGCAGACACCGCCCTTATAtgtatctgatatg
aaacacttatgtaaaaataaaacctttaaaatttcttgaagatCGTTTTT
GAGATTATTACGCTAGATCCTCATtattaaagattttcttttgttacttt
TGATCGGCTGCCAACCCGACTAGAAAAAGTAGTTAAGTCAACGGCGTTAC
AATCTTATGAAATGCGGTACTCTAAAGAAAATTAAAGGTCAAAAggtgaa
aagtaaaaaatgccAAGCTAATCATAGTTAATTTACGTGACGTTTCCTAT
GAAAGATAGTTGTGTCCCTTCCTGGATTATAAACAAgcgaaaatttttga
tattgaggtatttgtttgtttatttacagGGTGTGGGCGTTGTCCCAGAA
ATTCATGGAAAGTCAAATTCAATTCTATATAGGAGATCAGCCTCCTTCTC
AAATACCAAACGAATACAAAGCATCAAAATGTCCATTCAACGTTCCATAG
TAATCATATAGCGACATCAGATGAACGTTGTATGGACATGATGTGTTGTG
TCTGTTCGGCATTTGAAGGTGTCTGATTATAGACGTTTGTTGAACATTAT
ATTTACGAGTTGCGTCTGCTTGAAGGTTAAAGTACTCTTATAGCCGTTGT
CGTTCTATCTCTCTACTTATTTCTAGCCTTATTGTTTGTTTGTCTGCCTA
CTAGTGTCTTCTAGTGGGAGTTTTCCCGGCGTTTTACTGACCAAATTTCC
CTAGTATGATATTAATGTCTCCTTAAACTCGTCCCCAGTTCCTTTGCATT
ATAATTCTGATAGTCATCATGGAAGTACCACGCGCTCAtcattaaatcaa
aatatgaaaagtcTCCTGTTTTCATTAAGACAGGAGAAAACTTTCAGGCC
AAACCATACTAATTCATtttgccatcagtatataaGAGAAGAAATTATAG
GGTATATCTACAGGctagttttcatattttttattgtcCTTGGTAGGTGT
ACTCAGAAATCTACAcgaagcccggggggggggcattgACCTTGACGACT
GACGgtgacgtgccgctgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008367-exon-sc0000084-1491911889:461773..463991 | TCONS_00008367-exon-sc0000084-1491911889:461773..463991 | Clytia hemisphaerica | exon |
| TCONS_00008367-exon-sc0000084-1510915933:461773..463991 | TCONS_00008367-exon-sc0000084-1510915933:461773..463991 | Clytia hemisphaerica | exon |
| TCONS_00008367-exon-sc0000084-1575043694:461773..463991 | TCONS_00008367-exon-sc0000084-1575043694:461773..463991 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:461773..463991 . |
Blast
The following BLAST results are available for this feature:
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