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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008359 ID=TCONS_00008359|Name=TCONS_00008359|organism=Clytia hemisphaerica|type=transcript|length=962bp
TTAACGGTAGATATCTTTGGAGCAATATTTTCTCTTACAGCtttaattgt
attttcaataaaacaaaaaactcCTCTAGTCCGAGCCCTTGACTTCAATA
TGACAATTCTTCATTTGTTTACCTTACTGGTGAACTTTGTGGCAACTCCA
GCTATTTTTCTTAATCATCCCACGACATCAATTTGCATTATACGACCCAT
TGTAGTAAGCCTATTAAACACATTTTCAGCTTCCTTTTATTTGATCAAAT
CACAAAGATTGCTGCTGATCTTTAAATCAACGACACAAATAGATCAAGGT
GAAACCAAACGAAATCAACTATTTCAGACTCTCCAGAGCAGCTTAACCAT
TCTTATTGGCTTGATAATTGTCTACTTAACTAccatgaaaatcaaaccaa
gtATAAAGTCCAAGAGATATATTACTAACGtaacaaaagatgtttattgC
AACACAGGGCAACATGTGAATATTCAGCTCGGTTACTTTCTGATTCTCCA
GATCCTTGTCGCAATCCAAGCATTTAGAAGTCGCAATCTACCAGGTCCAT
TTAACGAAGCAATGTCGATAGTTTATTCAACGTTCATTGTTTTCACCACA
TACTCAGTAACCTTTCCTATCTATGCATACCAGAACTTAGATTCTAAGAA
ATCCCTGGTACATTGTGCCGCTTTAACTATTGCAAATTTGTTTCCAATGA
TGTTGCTGTATGGTAAAAGACTTCTTGTGGTGATTTTCGTTAGGAAGAAG
AACTCCAGAGAATATATTAGACAAAGACTATGGACTTTTGCATCTGATAA
TTAACTTGACTGTCaggttttgtaaaaaaatactgTAACATTTATCAAta
ctttttcaagatttataTATGACTTATTCCCACTCAGAAATGCCCAAAAA
TTGTAACGCCAACCCTCTTCCTAATTGAGAAAAACATATTAAAGTTTTGA
ATTCCGGTcctg Run BLAST on NCBI protein sequence of TCONS_00008359-protein >TCONS_00008359-protein ID=TCONS_00008359-protein|Name=TCONS_00008359-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
LTVDIFGAIFSLTALIVFSIKQKTPLVRALDFNMTILHLFTLLVNFVATP
AIFLNHPTTSICIIRPIVVSLLNTFSASFYLIKSQRLLLIFKSTTQIDQG
ETKRNQLFQTLQSSLTILIGLIIVYLTTMKIKPSIKSKRYITNVTKDVYC
NTGQHVNIQLGYFLILQILVAIQAFRSRNLPGPFNEAMSIVYSTFIVFTT
YSVTFPIYAYQNLDSKKSLVHCAALTIANLFPMMLLYGKRLLVVIFVRKK
NSREYIRQRLWTFASDN Run BLAST on NCBI transcript from alignment at sc0000084:254025..254986 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008359 ID=TCONS_00008359|Name=TCONS_00008359|organism=Clytia hemisphaerica|type=transcript|length=962bp|location=Sequence derived from alignment at sc0000084:254025..254986 (Clytia hemisphaerica)
caggACCGGAATTCAAAACTTTAATATGTTTTTCTCAATTAGGAAGAGGG
TTGGCGTTACAATTTTTGGGCATTTCTGAGTGGGAATAAGTCATAtataa
atcttgaaaaagtaTTGATAAATGTTAcagtatttttttacaaaacctGA
CAGTCAAGTTAATTATCAGATGCAAAAGTCCATAGTCTTTGTCTAATATA
TTCTCTGGAGTTCTTCTTCCTAACGAAAATCACCACAAGAAGTCTTTTAC
CATACAGCAACATCATTGGAAACAAATTTGCAATAGTTAAAGCGGCACAA
TGTACCAGGGATTTCTTAGAATCTAAGTTCTGGTATGCATAGATAGGAAA
GGTTACTGAGTATGTGGTGAAAACAATGAACGTTGAATAAACTATCGACA
TTGCTTCGTTAAATGGACCTGGTAGATTGCGACTTCTAAATGCTTGGATT
GCGACAAGGATCTGGAGAATCAGAAAGTAACCGAGCTGAATATTCACATG
TTGCCCTGTGTTGcaataaacatcttttgttaCGTTAGTAATATATCTCT
TGGACTTTATacttggtttgattttcatggTAGTTAAGTAGACAATTATC
AAGCCAATAAGAATGGTTAAGCTGCTCTGGAGAGTCTGAAATAGTTGATT
TCGTTTGGTTTCACCTTGATCTATTTGTGTCGTTGATTTAAAGATCAGCA
GCAATCTTTGTGATTTGATCAAATAAAAGGAAGCTGAAAATGTGTTTAAT
AGGCTTACTACAATGGGTCGTATAATGCAAATTGATGTCGTGGGATGATT
AAGAAAAATAGCTGGAGTTGCCACAAAGTTCACCAGTAAGGTAAACAAAT
GAAGAATTGTCATATTGAAGTCAAGGGCTCGGACTAGAGgagttttttgt
tttattgaaaatacaattaaaGCTGTAAGAGAAAATATTGCTCCAAAGAT
ATCTACCGTTAA Coding sequence (CDS) from alignment at sc0000084:254025..254986 >TCONS_00008359 ID=TCONS_00008359|Name=TCONS_00008359|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at sc0000084:254025..254986 (Clytia hemisphaerica)
TTAATTATCAGATGCAAAAGTCCATAGTCTTTGTCTAATATATTCTCTGG
AGTTCTTCTTCCTAACGAAAATCACCACAAGAAGTCTTTTACCATACAGC
AACATCATTGGAAACAAATTTGCAATAGTTAAAGCGGCACAATGTACCAG
GGATTTCTTAGAATCTAAGTTCTGGTATGCATAGATAGGAAAGGTTACTG
AGTATGTGGTGAAAACAATGAACGTTGAATAAACTATCGACATTGCTTCG
TTAAATGGACCTGGTAGATTGCGACTTCTAAATGCTTGGATTGCGACAAG
GATCTGGAGAATCAGAAAGTAACCGAGCTGAATATTCACATGTTGCCCTG
TGTTGcaataaacatcttttgttaCGTTAGTAATATATCTCTTGGACTTT
ATacttggtttgattttcatggTAGTTAAGTAGACAATTATCAAGCCAAT
AAGAATGGTTAAGCTGCTCTGGAGAGTCTGAAATAGTTGATTTCGTTTGG
TTTCACCTTGATCTATTTGTGTCGTTGATTTAAAGATCAGCAGCAATCTT
TGTGATTTGATCAAATAAAAGGAAGCTGAAAATGTGTTTAATAGGCTTAC
TACAATGGGTCGTATAATGCAAATTGATGTCGTGGGATGATTAAGAAAAA
TAGCTGGAGTTGCCACAAAGTTCACCAGTAAGGTAAACAAATGAAGAATT
GTCATATTGAAGTCAAGGGCTCGGACTAGAGgagttttttgttttattga
aaatacaattaaaGCTGTAAGAGAAAATATTGCTCCAAAGATATCTACCG
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008359-exon-sc0000084-1491911889:254025..254986 | TCONS_00008359-exon-sc0000084-1491911889:254025..254986 | Clytia hemisphaerica | exon |
| TCONS_00008359-exon-sc0000084-1510915933:254025..254986 | TCONS_00008359-exon-sc0000084-1510915933:254025..254986 | Clytia hemisphaerica | exon |
| TCONS_00008359-exon-sc0000084-1575043694:254025..254986 | TCONS_00008359-exon-sc0000084-1575043694:254025..254986 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:254025..254986 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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