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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008326 ID=TCONS_00008326|Name=TCONS_00008326|organism=Clytia hemisphaerica|type=transcript|length=4672bpRun BLAST on NCBI protein sequence of TCONS_00008326-protein >TCONS_00008326-protein ID=TCONS_00008326-protein|Name=TCONS_00008326-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1128bp METKITWEQLHISLPDTLYIGIKISGQTLLIQLDRKNDLLTDDFSSEDVIRun BLAST on NCBI transcript from alignment at sc0000084:397276..449471- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008326 ID=TCONS_00008326|Name=TCONS_00008326|organism=Clytia hemisphaerica|type=transcript|length=52196bp|location=Sequence derived from alignment at sc0000084:397276..449471- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000084:397276..449471- >TCONS_00008326 ID=TCONS_00008326|Name=TCONS_00008326|organism=Clytia hemisphaerica|type=CDS|length=64353bp|location=Sequence derived from alignment at sc0000084:397276..449471- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008326 vs. Swiss-Prot (Human)
Match: ATS17 (A disintegrin and metalloproteinase with thrombospondin motifs 17 OS=Homo sapiens GN=ADAMTS17 PE=2 SV=2) HSP 1 Score: 582.793 bits (1501), Expect = 0.000e+0 Identity = 358/1012 (35.38%), Postives = 486/1012 (48.02%), Query Frame = 3
Query: 927 TLYIGIKISGQTLLIQLDRKNDLLTDDFSSEDVIDIQAKEGNGLERRLVDSFHLHCYYAGFVFGISDSKVTISTCD---GLRGYINLDNEAYQIQPMRAQDGGFA---HLVYR----SDAKKAEHGRSME-CVTGRFERKFEDGQPDTTFDENMNIRHFTKESNHHXXXXXXXXXXXXXXXXXXXXXXXVIATVEVFVVADKDMIQFHGNDTIEDYVLTMMNMVSDMYKEPSLGAIVNIVVTKLLVLDTDEVKIS--SNGDKTLASFCEWQ--------FLQNLRNPNSNQK---FDVALLLTRKDLCLRSDVPCGTIGLAYIGGMCSSNRKCAVIEDIGLNTAYTIAHELGHTLGMQHDGLDNNCATQSNGRSHMMASHW-PAVSAKPMKWSKCSANKLQSYLSSYKSFCIQSKAPVFNIEYEHRRKFPGELYDADTQCQQQFGKFSRHCKYFKRTGMATKMCQKLWCEVEGEQFCMSKLDAAAKGTECNPAKWCMYGKCVPNTEIPHAIHGGWSKWTGWSRCTRHCGIGVQQRERFCDNPSPRNGGQPCPGERIEHKTCNTRPCMASSRDFRRKQCSQINNST----HTFVPVHSSKEPCSLHCRPESNNAYYSIRVRSQVVDGTPCYEGSSDICVNGQCRQIGCDLKLNSKLFTDVCGVCGGKADTCRMIEGKFSQPLGEGYVKAVDIPRGARNVLVQEVRPCPSFLALSGPGSYNINGNYTIKLPGTYDFNGTSVTYRRRGTQETYLVEGPLKTTMHFKV-LFQGYNFGIKYRYVMPIDKEEIEKNSXXXXXXXXXXXXXXRFGWMQGQWKKCSVQCGGGIMRREKARCLHFEGTKATFVENGKCVHAKSPVDEVKACNEQKCQKAWYKGDWSYCSRPCGNGRKTRKVVCKEQKQNGGWKIIDPNECNPATKPISVSACIIRSCFLKWEASKWGKCQGKCGKTGFMEREVTCSRPNG-CNPKTKPIVRRRCRMTKCKYGWTVQPWGPCSKSCGKGAQTRLIDCRSKKT 3869
L + + G+ L +QL R L+ F E+ G RR L C+Y+G V G S V++S C GL G I L E IQP+ G F+ HL+ R + + AE R + C ++K G+P + E N T E TVE VVAD DM+Q+HG + + ++LT+MNMV +M++ SLG +NI VTKL++L K+S +G+++L SFC WQ +L N + P D A+ +TR D C+ D PC T+G+AY+GG+CS+ RKC + ED GLN A+TIAHELGH LGM HD ++CA GRSH+M+ W + + WS CS + L+++L S S C+ P K PG Y A+ QCQ FG + C+ M MC LWC VEG+ C +KLD GTEC KWC G+CV T IP + G WS W WS C+R CG G + R+R CDNP P GG CPG +EH C PC FR +QC + + V +PC L+C P + + V +V+DGTPC +D+CV+G+C++IGCD + S D CGVC G TC +++G FS G AL G +IN ++ I+LPG + GT+V Y RRG E +GP K +H V LF ++GI Y Y +P+++ ++ +K L F W W+ CSVQCGGG RR C T V + C A P +V+ CN CQ W G WS CS C G + R+V C Q QNG P C P +P +V +C + C WEAS+W +C CGK G +R V C+ G C+ T+P C Y W W CS +CGKG Q+R++ C K T
Sbjct: 80 ALLLHLPAFGRDLYLQLRRDLRFLSRGFEVEEA---------GAARRRGRPAEL-CFYSGRVLGHPGSLVSLSACGAAGGLVGLIQLGQEQVLIQPLNNSQGPFSGREHLIRRKWSLTPSPSAEAQRPEQLCKVLTEKKKPTWGRPSRDWRERRNAIRLTSEH-----------------------------TVETLVVADADMVQYHGAEAAQRFILTVMNMVYNMFQHQSLGIKINIQVTKLVLLRQRPAKLSIGHHGERSLESFCHWQNEEYGGARYLGNNQVPGGKDDPPLVDAAVFVTRTDFCVHKDEPCDTVGIAYLGGVCSAKRKCVLAEDNGLNLAFTIAHELGHNLGMNHDDDHSSCA----GRSHIMSGEWVKGRNPSDLSWSSCSRDDLENFLKSKVSTCLLVTDPRSQHTVRLPHKLPGMHYSANEQCQILFGMNATFCR-----NMEHLMCAGLWCLVEGDTSCKTKLDPPLDGTECGADKWCRAGECVSKTPIPEHVDGDWSPWGAWSMCSRTCGTGARFRQRKCDNPPPGPGGTHCPGASVEHAVCENLPCPKGLPSFRDQQCQAHDRLSPKKKGLLTAVVVDDKPCELYCSPLGKES--PLLVADRVLDGTPCGPYETDLCVHGKCQKIGCDGIIGSAAKEDRCGVCSGDGKTCHLVKGDFSHARG---------------------------TALKDSGKGSINSDWKIELPGEFQIAGTTVRYVRRGLWEKISAKGPTKLPLHLMVLLFHDQDYGIHYEYTVPVNRTAENQSEPEKPQDSL-------FIWTHSGWEGCSVQCGGG-ERRTIVSCTRIVNKTTTLVNDSDCPQASRPEPQVRRCNLHPCQSRWVAGPWSPCSATCEKGFQHREVTCVYQLQNGTHVATRPLYC-PGPRPAAVQSCEGQDCLSIWEASEWSQCSASCGK-GVWKRTVACTNSQGKCDASTRPRAEEACEDYSGCYEWKTGDWSTCSSTCGKGLQSRVVQCMHKVT 1004 The following BLAST results are available for this feature:
BLAST of TCONS_00008326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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