TCONS_00008305 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008305
Unique NameTCONS_00008305
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1170

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008305 ID=TCONS_00008305|Name=TCONS_00008305|organism=Clytia hemisphaerica|type=transcript|length=1170bp
GTTTCAAGCTATGGCTAAAAGATGTTTGCCATCACCAGCTAGTTATTTTC
ACAAGAAGAGACCTCATATaagtCAAACACCAAAGTGTTTTGATGAGATT
ATCAATCGAAAGTATGAGAATGGGAAACTGTTATCCATAGCAGACTTACC
TCACCCGTCTACCTTGCATCGTCATAAGAACACTTCAAAATATCGTCGAA
AGAAGTATTCCGTTGTGGAAAATTATCTACAGCAATTGAAAAAGAAACAG
TCTGATTTCCAATGGAATAAAGAAAATCCTTTAGAAACCTCCTTCGCCTT
GGATTCTTCGGCAACATTATCTAGCACTCAACAATCTACAGACCATGTTG
TACCAAACGACCTCGTCGACAACACATGCAACACTTTTAACAACAAGTTG
AACGCTCATTTGCAACAAGTTGTACcaatcaacaacaacaattcTGCAAC
TTCGTCACGACTTATGGTTTCATCTCAACAAGTGACACGGtcaccaattt
tgaccaatggaaacCAGGAATCGAACGACTTTGACCATACCGGATATCGC
CAATATGCTCGCTTACAACAACACCATAACTCAAAAAGACAACATCATAC
AAACCAACCGAACAATAACAACAGTCTTTTTGGTGAAGCTAATAGATTCT
TAACAACTGGTGAAGTTACAAGAGATTCAATGGAGCAATGCAGCACTGAT
GCTCAAAACGTTTATCGTTACCACGGACTTGTACCCAATAAAAATTCTAA
CTCAACAACTGGAAGCTATTGCCAAACCTCCGATAGTAGGCATAACAACG
AGCGACTTCGTGTCTCCAAGTCACAAAATAACAACCGTTTTCAATTGCAT
ACTAGCCTTGAAACTCAACTCCACCATCACGATAGCTTTGAAACTCGACA
CCCTCAACCTCCGTCAGAGCTCTCGCAACTTTTCTCTTTCCAATTACCAC
GAAGTgatatttatccagatgaagaaaGTGAAGAGTATGGGAGAGACCAG
GTTTCCCTGCTAGATGAGAATGGCTTGTTGGTTGATAGAGCGAAAAAGAA
TTTGTTTGGTTCANcggcaattaggtccccccctgtttattaaaatctag
aaaattttccgacGTTTCTTCGCGGATGCCACTTTCagaaaaactctgat
caaagatatCTGTCATTATC
Run BLAST on NCBI

transcript from alignment at sc0000084:53130..60133-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008305 ID=TCONS_00008305|Name=TCONS_00008305|organism=Clytia hemisphaerica|type=transcript|length=7004bp|location=Sequence derived from alignment at sc0000084:53130..60133- (Clytia hemisphaerica)
GTTTCAAGCTATGGCTAAAAGATGTTTGCCATCACCAGCTAGTTATTTTC
ACAAGAAGAGACCTCATATGTAAGAATGCAACAGTAACTTTCTAGTTTTG
ATTATCATAGAGTATTTGTTACTTTTTAAGAAGTACAAAAGTTAGTTTTC
CCTAGCCTTTGTTTTGGTTTTTATCCTAAACTAAAGTCTATCTAACTTAA
CGTTACTTTAGTGGCCTCTAGCTTTTATCCTACTTGATCTTTTTGTGGTC
AAATTTATTGTAGAGTCAAGTTTACCTATTTTTAGGAATGCGTTTTTTAT
TCATTTGTTGTCTGAAAAGACCTTAAAAATCTGAGGCTCTAATAACTTTT
AACATTCATTTTTGCCAGAAAATTTGATAACAAATAAAACAAAACGTAAA
ATTTAACCAGATTTGATTTCTTTTCAGTTCATCAGATGTAGTCAGTCAAG
AAAAAGGATCAAGGTTGTCAGACACAGAAGATATTCAAAAGTATAAATTT
ATCTTTGTAAATTGTAGAAGTTTTATTAGGAACTAAGATGATAGACCTTT
AAGTTATTGGATTATAGTTTATAACATTTAAAGTTTGGCCTAACTTCTTC
TAAAGCCAGGTAACTTAAAATCTTTAAAATTTCTTTTACACGGTTCTCGT
TAATGTTGTATTGGGCTCTTCCAGAAAAAATTTGAATATGGGGGTTGCAG
GATATAACATTTGTAATTTACCCCCGGACATTCATAATTACCCCTAAACA
GAGCAGTTTTGCCCTCCAAACAAGGCAAATTTTGTAGATTTTTCACTACC
CTCTGGACAAAATATCCAATATATATCCTCCACACCCCCTCCCCCATGTA
AGAACATTTTCAGGAAGAGCCCATGGTTTATTTTTGTAACTTGAATATCT
TAACTTCGGAAAATACTTAAACAAATCCTAATCGTCTCGTACAACGTTAA
AGCCACTAACTTAAATTTATTCCGATAATTACAAGGGGGAGAGAGCCAAA
TAATCACTTTTCAGGTGATATTTTTTTATTGAAAAACTGTAAAGAAAAAC
TCTTAATCAAGGCTTGCTTTTTTTCTTTTTAGAAGTCAAACACCAAAGTG
TTTTGATGAGATTATCAATCGAAAGTATGAGGTATAAAATGAAGCTAGTT
GTTCAGACTTAACTTCAGCCATCTAGAAGAAGGGGAAACTAGAGTTTAAA
AGTTCATTGCCATTTTCACAGACACTTTCAGATAATATCTTATTTTCACG
AAACACTTTAAGGGGAAGATTTTTTTTCGCGAAAGTTCTTATATCCAGCC
AGTCATCGAGTTTATTGTCAAATTTTCAGAAAGCTTCAGCTGTCCATAGT
TAATTCGATTTTGGTAAAATGACCCCTTAAATCACCAAATTTAAAATCCA
CAAACAGTATTCTAATGCAGGCAGCTATTCAGTCAATACTAATTATAAAA
AAGTTTCGCGTCCAGAATTTTCTAATTCTTTTTCTAATTGTTTAACCCCT
AATAAATTCGTCAAATTTGAAAATGAATGTTCCCTCATCAGACTTTGATT
TTAAACTTATTTTGATAGTATTTTTGTCGATAAAAATAGATTTTATTAAC
AAAAAGTTTTAAGTAATAGTACTGACTGATCCAACTCGTTCTCTGGACGC
GAGGGTTCTGACATTAAATTAAAATAATTTTTCTACAGAGAAATCATTAT
AATAAAGAGTTGACACAATATTTGTTTCAAACTCAGAGTTTCATGGTGCT
CAGATACCAATCATCAGTGAAATGAGATACGTTAGAAAATAAAATACAAT
ATTGTTGTCTTCAAAAAATGTTTTTGACGTCACATTCGAACATCATCAGA
GCTATAATTTTCGTTTGTGTCTACAGAGAAATCTATTTGTTTTGAAAATT
AATTCATGATATGCACCATTGAAATGTCTTCCATTCCACCCAATAGCTGA
TTGGTTGAAAGTGACTTATTGACTGATTTTACGTCACGTGAAACCAATGA
GCGATTGGTTCCGCGATGTAATGTCAGAAGACATTGCAGTGGTGCATATC
ATGAATACCAACTTTGCCATAGAATGGGAAACTGTTATCCATAGCAGACT
TACCTCACCCGTCTACCTTGCATCGTCATAAGAACACTTCAAAATATCGT
CGAAAGAAGTATTCCGTTGTGGAAAATTATCTACAGCAATTGAAAAAGAA
ACAGTCTGATTTCCAATGGTAAGTTGATACTGGTGCATCTGAGATTCAGA
AAAGACCTTAAAAATGGTTTTCGTAGGGCACCCCTTAGATCAGGGCAAAT
TTTTTATATTATGCTCCTAATAGGGTGTAGAATCGACAAAAATAATTTGC
CCTTCTAGTCTCCTGCAGTTTTTTTAGTTTTAATTTAGTTACCTTAAGGG
AACTAATTTTTGCGGGAACTAAATTTTGCGGTTTTTGCGGATTTAGGCCC
AAACCGTAAAATTAAGTTCCCGCAAAATTTTTCAAATGCGAAAACCAAAG
GTCGAATGATTCACAGTACGGCTCTAATTTTCTTTCAAGTGAGAAATCCG
CAAAATTAAGTTCCCGCAAATATTGAGTATTAAATCTTGAACTGCGAACC
GCAAAAATTAGTTCCCGCAAAAAATAGTTCCCTTAAGGTAATCAATATGC
CGTGACCTAAGGGGTGCCCTACGAAGTGACTCAATTCACTACCTCGGCCG
CTGGTCTATGAACAAAATGTTGAAATACTTCCATTCCAGCTTTCCTGCTT
TTGTGTTATAGAATTAAATAAAAGCTTCTTTAAGTACACAAGGAAAATCT
TTCTCAAAGCGGAAAAAGAAACTCCACAGCTTTTCAAATTTAGTGCAATA
TTTGAACCATATCGATTATTACAAGTTATTATAAGTTCTCAATAATTTTT
CAAAACAGTTTGTTTTGTTACTACGTTTGCAATAGAATCTATTTTGTGAA
AAAGTTGCGGCCTGAAGAATCCTCCTTGTCCATTTGCTGCAAATAACGGT
CGGCCATAGTTTCTAGCGGCCATTCTAAAGGTTACTTTCTCATTTAGTCC
GGCTTATAAGCTGTTTTCGTAATTTTTGATCATGTTTTAATTACATTTCT
TTAGTTCCTCATACTTACCAAATTGTAAATTATAAAAACTGCTTTTTGTT
TTTATGAATTATGAAGTATTTTATTCCTACCTACAGGAATAAAGAAAATC
CCTTAGAAATCTCCTTGGATTCGTCGTAATTTTTATAATTTTAATTACAT
TTCTTTAGTTCCTCATACTTGTAAATCATAAGAACTGCTTTCTGTTTTTT
ATGAATTAATAAGTATTTTTTTCCTACCTACAGGAATAAAGAAAATCCTT
TAGAAACCTCCTTCGCCTTGGATTCTTCGGCAACATTATCTAGCACTCAA
CAATCTACAGACCATGTTGTACCAAACGACCTCGTCGACAACACATGCAA
CACTTTTAACAACAAGTTGAACGCTCATTTGCAACAAGTTGTACCAATCA
ACAACAACAATTCTGCAACTTCGTCACGACTTATGGTTTCATCTCAACAA
GTGACACGGTCACCAATTTTGACCAATGGAAACCAGGTATCTATTCTTTT
TTGATAAACCGGTTTCCATCTTCATTATCAATTTTTCAAATGTTTTTTGG
CCCAGCTAGCTTTAGCGTACTGGGCCTTTCATTAGCATTCTGCCCGGTGT
CAGTGTGTAACAATTTACTAGGCGATACGCGTTTTCATATNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTGTTGTAAATAAGAGATAGCCGAATGGTCTAAGGCGTCTAT
GGCTTGTATTAGCGACTCCAGGTTCAAATCCCCTCTGCTACTCAAGTCTT
GTTCAGTTAATACTTTTATTCGCTGGGCCTTCATGCCCTCTGGGCTTCTT
GTTTTTTTTTCAAATAGTTTCTCAAACTAAAAGAACCACCTTAGAATCTC
CTTACAAGCCATGATCTCTCCGCTTTTATTGCGTGTAGGAGATGTTCATG
TTGGCTCCGGAACGTTTCGGAGCAGGAAAGCCTAGAGCAGTTTTTTTTGT
GAAGCTTTATGTCTAAACCTAAACACAGGGCATACGCCATAAAATTGAAA
GTGGGGGACAATGAAAATAGAGTCTAAGAGGGCGCAACCATGATTTGTTT
ATTTTTCAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGCTGGAACA
TTTTTCTTAGACATTCAACTTTCTATCGATTTTCGCCGTAAATGAGGGAA
AGGGAGGCAGAAAGTTGACCATCTTGACAAGTAGAGCTAAACTATAGCAG
GCCTCCCATTTGTCATAAATTCCTAAATTTTCACAAATTTTCACCAATTT
GGTAAAAATGTCATAAATTGTCATAAATTTTGAAGATTTGTCATAAATTT
CCTAAATTTCTTACAAACTTTCCCATCAAAGTCATTCTTTAGAAAATATC
AACTTTTTATCGATCTTCAGCTGATTTAAAGAATTTTTACATAGATTTCA
CAACACTTTCTTGAAAAAACTCATACCTTTTATTGTAACTTGTGGTCAAC
CAACATGATGTTCTACTTCTATTGGAAGATTTGTTGTTAATCCTGGAATG
CGGCTGAGGCTGAGCCAATATCATGAAAGATTCATTTTGAATTTAATGAA
AATGAGTTTGAATAATCAATTTATTTGTGTACATAATCAATCTATTTTAA
TGCTAGGCTGAAAAGTTGTTGTATAGTTTCATTCTTTAGTTTGCCTCGTT
TAAAGTTTAAAGGCTGAAGTGTTTGAGTTTTTCTGAACCAGACGATGTCA
GTCGAACCATCGAACTAATCGAATTTCATCGAACTAATCGAACGATAGCT
GTTCGATTACCGAACATCATCGAACAGTTATCGAACCGAGAAATCCCTGT
AAAGTTTGATTGTGTTCGATAGCTGTTCGATGTGTTCGATTTCAATTCCA
TAGACCTCGACCACCACGCATTCTCAGAGGCGGCCACAAATGCACCATCA
GGGTGGGGCAGAAGTAGTTGGCGCCCACCCCGTAAAACAAACAGCATTAA
TTAAGATCTACAAACTAATAGAACTCTATTTGAACTCTAAACGAACTTAA
TTGAACAATATATTATTATCGAACTGTAATCGAACAGTAATTTCCGGTAA
AGTTCGATTACTGTTCGATTTAGTTCGGTAATCGAACAGTTATCGTTCAA
TTAGTTTGATGAAATTTGATTGTTCGATTACAAAAATTGGTTTGATAACG
TTCGGTTGACATCGTCTGGTCTGAACCCAAGTTTTGCATTTTATGCTTCC
TTTTATGTTATTGTTCATTTAGTTGTTTTGATTAAACAGATAATGAATAC
ACAGTGATTACAGTGTCGCAGTTGCCAGAGGGCCTTGATTTACATAGTTT
CTATTCCGCTTTTACTGGACTTGAATTCATAGGGCTTAAAACCTGTTAAA
CAATAATTTGAAAGAGCACAAGAATTTTTGTCATAAAAATGTCCTAACTT
TTGTTGAAATGTCATAAATTGTCATAAATTTTACACCCAAAAATGTCATA
AAATGTCCTAAAAAAGCATTAAAAACTGTCATAAATTCATAAAAAAATAG
CTAAATCAAGAGTGGGAGACCTGCTATAAATTTCTATATATCACATCGCA
GGAATCGAACGACTTTGACCATACCGGATATCGCCAATATGCTCGCTTAC
AACAACACCATAACTCAAAAAGACAACATCATACAAACCAACCGAACAAT
AACAACAGTCTTTTTGGTGAAGCTAATAGATTCTTAACAACTGGTGAAGT
TACAAGAGATTCAATGGAGCAATGCAGCACTGATGCTCAAAACGTTTATC
GTTACCACGGACTTGTACCCAATAAAAATTCTAACTCAACAACTGGAAGC
TATTGCCAAACCTCCGATAGTAGGCATAACAACGAGCGACTTCGTGTCTC
CAAGTCACAAAATAACAACCGTTTTCAATTGCATACTAGCCTTGAAACTC
AACTCCACCATCACGATAGCTTTGAAACTCGACACCCTCAACCTCCGTCA
GAGCTCTCGCAACTTTTCTCTTTCCAATTACCACGAAGTGATATTTATCC
AGATGAAGAAAGTGAAGAGTATGGGAGAGACCAGGTTTCCCTGCTAGATG
AGAATGGCTTGTTGGTTGATAGAGCGAAAAAGAATTTGTTTGGTTCANCG
GCAATTAGGTCCCCCCCTGTTTATTAAAATCTAGAAAATTTTCCGACGTT
TCTTCGCGGATGCCACTTTCAGAAAAACTCTGATCAAAGATATCTGTCAT
TATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004664XLOC_004664Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008305-exon-sc0000084-1575043694:60065..60133TCONS_00008305-exon-sc0000084-1575043694:60065..60133Clytia hemisphaericaexon
TCONS_00008305-exon-sc0000084-1575043694:59003..59051TCONS_00008305-exon-sc0000084-1575043694:59003..59051Clytia hemisphaericaexon
TCONS_00008305-exon-sc0000084-1575043694:57916..58061TCONS_00008305-exon-sc0000084-1575043694:57916..58061Clytia hemisphaericaexon
TCONS_00008305-exon-sc0000084-1575043694:56548..56800TCONS_00008305-exon-sc0000084-1575043694:56548..56800Clytia hemisphaericaexon
TCONS_00008305-exon-sc0000084-1575043694:53130..53782TCONS_00008305-exon-sc0000084-1575043694:53130..53782Clytia hemisphaericaexon
TCONS_00008305-exon-sc0000084-1510915933:60065..60133TCONS_00008305-exon-sc0000084-1510915933:60065..60133Clytia hemisphaericaexon
TCONS_00008305-exon-sc0000084-1510915933:59003..59051TCONS_00008305-exon-sc0000084-1510915933:59003..59051Clytia hemisphaericaexon
TCONS_00008305-exon-sc0000084-1510915933:57916..58061TCONS_00008305-exon-sc0000084-1510915933:57916..58061Clytia hemisphaericaexon
TCONS_00008305-exon-sc0000084-1510915933:56548..56800TCONS_00008305-exon-sc0000084-1510915933:56548..56800Clytia hemisphaericaexon
TCONS_00008305-exon-sc0000084-1510915933:53130..53782TCONS_00008305-exon-sc0000084-1510915933:53130..53782Clytia hemisphaericaexon
TCONS_00008305-exon-sc0000084-1491911889:60065..60133TCONS_00008305-exon-sc0000084-1491911889:60065..60133Clytia hemisphaericaexon
TCONS_00008305-exon-sc0000084-1491911889:59003..59051TCONS_00008305-exon-sc0000084-1491911889:59003..59051Clytia hemisphaericaexon
TCONS_00008305-exon-sc0000084-1491911889:57916..58061TCONS_00008305-exon-sc0000084-1491911889:57916..58061Clytia hemisphaericaexon
TCONS_00008305-exon-sc0000084-1491911889:56548..56800TCONS_00008305-exon-sc0000084-1491911889:56548..56800Clytia hemisphaericaexon
TCONS_00008305-exon-sc0000084-1491911889:53130..53782TCONS_00008305-exon-sc0000084-1491911889:53130..53782Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:53130..60133 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.36797	1.045	0.457489	1.49813	1.09242	1.86916	1.18469	0.61337	0	0.414165	0.421035	0.738181	1.0957	0.865464	0.981166	1.23605	1.92458	1.05959	0.49221	0.785056	0	0.436913	1.89566	12.4824	14.7386	0	0	0.711404	1.33132
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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