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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008250 ID=TCONS_00008250|Name=TCONS_00008250|organism=Clytia hemisphaerica|type=transcript|length=2139bpRun BLAST on NCBI protein sequence of TCONS_00008250-protein >TCONS_00008250-protein ID=TCONS_00008250-protein|Name=TCONS_00008250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp LVLCKKIFTKKLFKMAAPTVEVKYTKIMINNKWVDSISGKTFPTLNPCNERun BLAST on NCBI transcript from alignment at sc0000084:78255..87152+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008250 ID=TCONS_00008250|Name=TCONS_00008250|organism=Clytia hemisphaerica|type=transcript|length=8898bp|location=Sequence derived from alignment at sc0000084:78255..87152+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000084:78255..87152+ >TCONS_00008250 ID=TCONS_00008250|Name=TCONS_00008250|organism=Clytia hemisphaerica|type=CDS|length=19734bp|location=Sequence derived from alignment at sc0000084:78255..87152+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008250 vs. Swiss-Prot (Human)
Match: ALDH2 (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2) HSP 1 Score: 642.114 bits (1655), Expect = 0.000e+0 Identity = 328/485 (67.63%), Postives = 385/485 (79.38%), Query Frame = 1
Query: 61 EVKYTKIMINNKWVDSISGKTFPTLNPCNEEKIADVAEGXXXXXXXXXXXXXXXXXXXSEWRTMDSSARGRLINKFADLLERDQEYLAKLETLDNGKPYSVAYNVDLVKTIKCFRYYAGWCDKIQGKTLPIDGDFFCYTRHEPIGVVGQIIPWNFXXXXXXXXXXXXXXXGNCIVMKPAEQTPLTALYTAQLIIEAGFPPGVFNIVPGYGPTAGAAISEHMDIDKIAFTGSTEVGKIVQKAAADSNLKNVTLELGGKSPHVVFADADLEQAVELCHFGLFFNMGQCCIAGTRIFVQDTIYDEFVKRSVDRALKRTVGSPWDEGNEQGPQIDSEQFNKILGLIDTGKKEGAKMHCGGNRHGDKGYFIQPTVFSDVTDDMTIAKEEIFGPVMQIMKFSTMEELLERVNKTMYGLGGAVQTSSLDNALTVSHGIRAGTIWVNSYDNFDCIAPFGGYKMSGAGRELGEYGLSQYSEVKTVMIKVPKKNS 1515
EV +I INN+W D++S KTFPT+NP E I VAEGDK D+D AVKAARAAF+ S WR MD+S RGRL+N+ ADL+ERD+ YLA LETLDNGKPY ++Y VDL +KC RYYAGW DK GKT+PIDGDFF YTRHEP+GV GQIIPWNFP+LM AWK PALA GN +VMK AEQTPLTALY A LI EAGFPPGV NIVPG+GPTAGAAI+ H D+DK+AFTGSTE+G+++Q AA SNLK VTLELGGKSP+++ +DAD++ AVE HF LFFN GQCC AG+R FVQ+ IYDEFV+RSV RA R VG+P+D EQGPQ+D QF KILG I+TGK+EGAK+ CGG D+GYFIQPTVF DV D MTIAKEEIFGPVMQI+KF T+EE++ R N + YGL AV T LD A +S ++AGT+WVN YD F +PFGGYKMSG+GRELGEYGL Y+EVKTV +KVP+KNS
Sbjct: 33 EVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKVPQKNS 517 The following BLAST results are available for this feature:
BLAST of TCONS_00008250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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