XLOC_004644 (gene) - C. hemisphaerica

Overview
NameXLOC_004644
Unique NameXLOC_004644
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000084:78255..87152+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004644 ID=XLOC_004644|Name=XLOC_004644|organism=Clytia hemisphaerica|type=gene|length=8898bp|location=Sequence derived from alignment at sc0000084:78255..87152+ (Clytia hemisphaerica)
TTAGTTCTGTGTAAAAAAATCTTCACTAAAAAACTATTCAAGATGGCTGC
TCCAACAGTAGAAGTCAAATACACCAAGGTAAGGAACCCATACCTTTTTT
ATTGGTATATTAGTAGTCTGTAAAGATGTGAAATCGTCAGTCttgaaata
tatatattttctcgAAGAGGAGACGTTTTCCGTCTAAATATTGTTATGTT
AAAGAAGTTAAAGATCGACAACTTGAAGCTTTTCTAAGTAGAAAAGTGGA
GCTAGCTTTCGTGCTTATGTGGTTGTTGCGCAACcttgtatcccaggctt
tatttacgttactgattgtcaccagagaatattatctagcgctatcagta
agcatcaaaaagctgataatacgcagggaacgaggttgtNCCACCAGAGA
ATactatctagcgctatcagtaagcatcaaaaagctgataatacgcaggg
aacgaggttgtttgttgcgtcaataattttttcttcaaatggcTGATTGA
ATATTTAAATCTATAACTGAAGCTTGCAAAAACCTGGCAAACCCTAACCC
TGACTTTCTATCGAGCCCTTGCAATATTATTGGTGCCCTTTTGATTTAGG
AAAAGTGACACTTTTACATTTGATgaagttgattttttatattccagaca
attttgaaaaatgtcatgTGATTTATTTACCAAATTGTCAAATTCTGTTT
GCATTCATgtccaaaaaaagatttttttgtgcCTGCctccaatcaatcaa
tcaaaatgtCGGCTTGACGTCTTCACTTTTTGACATGGTTTTCAGAGTTT
TATCTAGGTGAGGCTATAACCTAGGCTAGAAAGACAGGGCTGAGCGGTCA
GGAACGTTCGAAATCTGATTTTTTAGAAGGTCTGAAGGCCAATCTCATTT
GACCGCTACTGCAATCAAGGtttatatttgagaaaaaagggaaattcccc
aggaaattttgaaacgacaatcgatttgtaagtgtgttcgaagggtagag
ttttaacgctagacttaagacctaggaccttaggatctgtgaggatccaa
aagttcaaaaatagtccaataaggctcaaaatatagcctggaagttattt
caaccatgattgtagaccGCTCGTGATAACGTACCGTAAAACGGTTCCAA
TTTTTaggtactttaaatcgcttggtTAGTCACATTTACCTGACCCAAAC
CCTACAGGATAATTCAGCCATGAAAATTATTCTTGGAgaaattacaaaat
ataaaattacaTGCTTTCCAAAATCATGCTACTTGCTTTTTGAGCTGACA
TTGAAAAACTGCATTGAATTCCAAAGGGATTCGAATGGAGGAAAgctcaa
aattaaaaatgtttttatttatttgctTTTGTTTGTTTAGATTATGATCA
ACAATAAATGGGTTGATTCGATCAGTGGTAAAACTTTCCCAACACTCAAC
CCTTGCAATGAAGAAAAAATTGCTGACGTTGCAGAAGGAGACAAGGTAAG
TTCTTATCAAAGTTGTTTATCTTTTGAATGGAGTCAActactgtacacgt
ttttttttttaagaaacacacttttaagaaacatgaggctcagaatgcct
aaaaactaagaaacatctaagaaacatgctgaggctgagaNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNtttcttaaaaaaaaaaaaacgtgtacattctTAAGGTTCGTGG
TTTGTACTTACCATTGAAAGTACAATCGACATTACCtctttattttttgg
catttcttaaagttttttatgagttttttttaTGGCTGTATACTAAAGGG
TTTTTCGACGCAATGCAAAttcgtccaacatttcatcttaattcaaaaac
tttcaatgtGGGATCAAACACTGAATGCATATCGGGTGAAACATCAGTGG
TGGCCAAGTGATCAAAGGTGTCAGTGCTACGATGCAGGGGTTCGCTGTTC
GAATTCCTGCTCTTACCAAttttccgttcagttcatagatagccgaacCG
ACTGACGGTgaaccccgtgaaaacaatcgaaagactgtctaaaagtccta
atTTACTGAGCTAtgcacgtaaaatatcgactctataaCTTATGTTTGTG
AGAGACGAACGTTGTGAATTCAACGCCAGACTTCTCTTATTTCTTTTACA
GGCTGATATTGACGTGGCTGTGAAAGCAGCTCGTGCAGCATTCAAACGAG
ACAGCGAATGGAGAACGATGGACTCTTCAGCGCGTGGTCGATTGATCAAC
AAGTTTGCTGACTTGTTGGAAAGAGATCAAGAATACCTTGCGGTAAGTTT
TCGTGAATTAAACGTTGCTTCAACGCCCGCTTGACGTCCTTAAGGTTCCT
ATAATATGGATTTTTCAGCACGTAGGTGATTAATCAAATATGCTCTTTCT
GAAAAGAGACCAAGAATACCTTGCGGGAAGTTTTCGCGAATCTAACGTTA
TTCCAACGCCCGCTTGACGTCCATTGACGTTCATAAACGTTGCTTCAACG
CCCGCTTGACGTCATTAAGGTTTTTATAATATGGATTTTTCAGCACGTAA
GTTATTAATCAAATATTCTCTTGCTGAAAAGAGACCAAGAATACCTTGCG
GTAagttttcgcgaatttaacgttGCTTCAACGCCCGCTTAACGTCCATA
AGGTTCTTATAATATGGATTTTTCAGCACATAGGTGATTAATCAAATATG
CTCTTGCTGAAAAGAGACCAAGAATAAAGTGCGGTAAGTTTTCGCGAAGC
TAACGTTATTCCAACGCCCGCTTGACGTCTGGTAGAAGATTCACCAAGTT
TTGTGACCTCTGATGTAACGTATGTCCGTTTCATATTAGAAATTGGAAAC
TTTGGACAATGGAAAACCTTACAGCGTAGCCTACAATGTGGATTTGGTGA
AAACGATCAAATGTTTCCGTTATTATGCTGGATGGTGTGATAAAATCCAA
GGAAAAACACTTCCCATCGGTAAGGCAAGCAGTTTCTTGACTAACAAAAT
TACACAAATCTGATTGGCTGTGNAAATCCAAGGAAAAACACTGCCCATCG
GTAAGACGACCAGTCTCTTGTAATCGTCTGACTAACAACATTACACAAAT
CTGAGAAAGTCTCGAGGAATAGTTCGGGCTTATTTATATTACTTTATATT
ACTACCATTCGGAAATGACATAAAGAATAGCGTTTTCGGCAGCGATATTG
GAAACGCCAATctcaaaaactttaatttttccCATTTGAGCTAAAATGAC
GCCAAAAACTGTTTTATGGAGCTTCAGGTGAATGGCCGAAGAATCTTTCA
TAATTCCGCCCTTTGATCACGTTACTaggcttttttaaatttgaatatct
ATACTTCTAATCTATCTGTAATCCGAAGAAATTCTTtgccccttgaagat
cgaattagagagattcaACTGTATTATTTCACTCTTTAACAGACGGAGAC
TTTTTCTGTTACACACGTCACGAACCCATCGGAGTTGTCGGACAAATCAT
CCCATGGAACTTTCCTATGTTGATGTTAGCCTGGAAAGCTGCCCCTGCAC
TAGCCGCTGGAAACTGTATTGTTATGAAACCAGCGGAACAAACACCGCTC
ACTGCGTTGTACACTGCTCAATTGATCATCGAGGTAAGATATCTATACCA
TGATNAAACACCGCTCACTGCGTTGTACACTGCTCAATTGATCATCGAGG
TGAGATATCTATACCATGATGTTCGTTTGTTATTTTGGTGAAACCATGGA
AAACTGAAACCCTTGAAGTAATTTTGTCGGTTTCCTTTTCTACTGCGACA
ATTAGTGTTATTTCACCTcactttcaatattttcaagcaATGTCCTAAAT
TGCTGCATTTGCCGAATTCGACTTGTAAAAATCGAACCAAGTTTTGCCTG
TTATTTCAGTCATTTCCCTCTTAAACAAGTCACCAATTCAATCCTTCTtt
cgaacgaaaaaataaattccAGTAAGAAAATCGTTGTCAACGCTCCTAAG
GAGTGCTCCCTTATAGAACACCCCTTTGTATTTCCGCTCGTTTATCACTA
GGCTGGATTTCCACCAGGTGTTTTCAACATTGTTCCAGGCTATGGTCCAA
CAGCTGGAGCTGCCATTTCTGAACACATGGACATTGATAAAATAGCTTTC
ACTGGATCCACTGAGGTATAAAGTTGTTCCATAAACCCTTACTAAGGAGA
ATGGGTCAGAGTTTTTCCAGTAGGATGGATATTAAATGTcagaagtcgtt
gcattgacttTTGACGTCATTTCTCCCTTGAAAACTTAACCCAATCCCTT
CATAACGTTAGGCTTGATAAGTGTTTTTTGGAAGCGTTATGAAATTTGAT
GGATCCACTGTAGATTTGTTAACGTATGTAAAATCAAGGTCAAAGACGTG
AGACTGGACTTCTGTGATATTTGGTGTCAAAAAGAGTACAGAATTGACgt
tttcattgtattttattttttggagtTACATCGAGAAATCGATAAAGTCC
ACTAAAAAGTCAATTTTATCGTTTTCAATGATGATTATAATGCCGATTTT
TAGCTGgcatttttgataatattaGGTTGGAAAGATTGTTCAGAAGGCAG
CTGCTGATTCCAATCTAAAGAATGTTACACTTGAACTTGGGGGTAAAAGG
TATCATGTATAAAGAAtaatttcatttaaatttttcatctaTTTTTCCAA
TCATGCTTCGTTTCATTTGCAACTCTCGTCACTTCGAATCTTGAATGTCA
AATTATAGAGTGTATTTTACTAGGGTTTCATATTGGCAGGAACAGGCTCA
GAAattggttcgaattatagaaaaattcgaTTAATAGAAGAGTCCATTGT
ACCTCCTTTATAAGCTGAAGTTTTAAACGGTCAACTTTCTGCCTTTCTTT
CCCTCATTTTTGACGGAAGTTGAGCATTCTAAGTCAATGCTATCTTTTCT
TTCGATACTTTTTTCATATAAGGCTTCTTGTTGTCGACTTTTCGTTCACA
TTCTTCCTTCCTTCACGTCTAACAGTGGATTGTAAGGAAGGTCTAATAGT
GGAAGATTTTTGCTTAGTTTCCATCTTATTTTTCTTACTCATCATGCGAC
CGTAGTGCAATGGTaaagcatccggctacggtgcgcaaggttgtgggtcc
AACcctcagccgggtcataccaaagatttccaaaatggtacttgatgcct
ctctgcttggtgCTCAGCAATtgagagaaggatcaagggtaagtggaaca
atccagagagagagagagtggtgccctcccctaccttcgggtagatctat
cgaaagaggagccttcgggtcgcctccgactgcggtcgcagacttattTA
CTTTCTTACTCGTGTAATTTTTTAGCCCGCACGTCGTATTTGCCGATGCT
GATCTCGAGCAAGCAGTCGAATTGTGTCATTTCGGTTTATTTTTCAATAT
GGGTCAGTGCTGTATTGCCGGTACACGAATTTTCGTACAAGACACAATTT
ATGATGAGTTTGTCAAGCGATCTGTTGACCGTGCGCTCAAGAGAACGGTT
GGAAGCCCATGGGATGAAGGAAATGAGCAAGGGCCACAGGTAAGGCTTGA
TGGGAAATTACTATCTGGACTACGAATTGTGAAGTCAAACCCGGCGTAAG
ATATTCGAGATGCTTCCCCTTCCCTTGTTACAAGACAAAAATCTTTCCTT
GAGTCACTCCGTAGACATTTCACATATAAAATGACAATATGAGATGGCCA
AAAACCGAAACTTTTTCAAGTTAAACTACAGAACTTGTGCCATAATCGAA
GCAATTATTTGATTTGTGTAAGTAGTCGCCTCTATAAATTCGAACGTATG
CTTCCACAATGGCGGATTTTCCTTAAGTTAAGTAACTTTTgcaaaagctg
aaaaaaaacttctatagATAGTTTCTGAAAAAGATCTCCACTTGAAATCT
ATTCCACTTTCTTAACTTCCAGATCGATTCGGAACAATTCAACAAGATTT
TAGGACTGATTGATACTGGAAAGAAAGAAGGAGCCAAGATGCATTGCGGT
GGTAATCGTCATGGTGACAAAGGATACTTCATTCAACCAACCGTCTTCTC
TGACGTCACAGATGATATGACCATTGCTAAAGAAGAGGTAAGGAGAATGG
GGCGAGTTAGGAAAGAGTTGAGAATGAGtggtattagattttattttcct
tCATGGCGCATTGAATAACTGTTAAGGATTTAAAATGAACCAGATGGTac
ttattttaaaaatcttttcccACTCCATTTCTCACTTTTTGTTACATATT
ATTTCCAGTAGACACACAAAATATAAATAGACCTTGCCcaattattcaaa
aatatgCAGGCTAGTTGTTGTCAATTCTTTAATTATTTTTACTATTCAAA
TACATTCAACTTTCAAATGAAATTCACGTGGTTGCGTCCTAGAAAAGTTG
CCATGGATCCTAAGgtttggccccctactattattctattttaaagattt
tcggTCCAGTTATGCAGATTATGAAATTCAGTACAATGGAAGAGCTTCTT
GAACGTGTCAACAAAACAATGTACGGCCTTGGTGGTGCTGTACAAACCTC
TAGCCTGGATAATGCACTCACTGTTTCTCATGGAATACGGGCTGGTACCA
TCTGGTAAGAAATGCGAATAATCGACTTGTTTAGTCTTTCGTTTCTTTTT
ATGCCCTTAATCTGCACGACACTACCCAGTTTGGAATTTTCACCAaaaca
caggttgcaaaattagtctgaagacaaatcacgcttttactcgaaaattt
tatgtgcttgttaccagacatttatttctgattaaTCTGATCTTTTTGTT
TCCAGGGTGAATTCATACGATAACTTCGACTGTATTGCTCCTTTTGGAGG
TTACAAAATGTCTGGGGCAGGGCGTGAACTGTAAGTTTAAATGATCTTTA
TCCTCTGATTGGGCATTCATACCAAGAAATTCTTCAACAAAGCAAGAAAC
TAATTTCCTTCATTTAGTTAAAGATTCGAATCACGGAGGGTGTTTATACG
GCTTTCAAACTGAAATTTAATTAACGGGTAATTATCAATTTTATCTTTCC
CCCTTTAGCGGTGAATATGGATTATCGCAATATTCAGAAGTTAAAACGGT
AAGTTCATCTTTGTGTTCATAGgtcaaaaaaggtttgtttcGTTCCTGAA
AGTCCTTAAAAAAGTCTCACAGAAACACGGATTTCATACTACCCGCCGCA
AAAACGGTAATTTAAAGGCTCCCAAATCTTAAGGTTTCACTTTTGCTTCC
CTGGGAAGGTTTGAAGTttccattgacttccaagcccgaggggctagact
cgagactcctggatgggaaatgaatccactacaaacgctggattgaaagt
aaaatctatcgctacaatccttcaagaaatatttgagacaaatgggaaat
tccccaggaagttttgaaaccacaatcgatttgtaagtgctctaaagtag
gttcgaagggtagagttttaactctgagttttaacgctagacttaagact
aatGACCTTATGAGcttaggatccaaaagttcaaaaatggtccagtaagg
ctcagaatatagcctggaagtctgccaacccctcccaaattgaaatattc
gattaagttaaagagatagcccaaaatcgactttttcgcctgaactttaa
atctcgaaaaacatcaaaataaccggaattctcaatatatttcttgaaag
attgtagatttcaaaaaatgcagtcctcaaaaacaaaggaaccgctagat
acaatctgtcgtcatgattgcggcgcgttctaggcTTCAAACTTAATGGA
AGATTCCACTCTAGCCACTTCTTCTAGCCCAATAATCCCAATAGTCCCAC
CCTATAGTTTTCATAAAAGACCCgttttatatcatttttaccAGGTGATG
ATCAAAGTGCCAAAGAAGAACTCATAACTTGGTTTGTATTTATGTAAAGA
GACACCTGATCACTTAAGAATATTACTAACATCTCTTTAAGCAGGGCTCA
ACTAAGAATTAACATTATGGAGGTAATATTTCTGTTAAATAGTTCTCAAA
CTTATCAACTGTAAATCGTTAAAGGTAAATGACATCTTTATTACGTGTAA
GCTCGTTGCACACGAGCGATAAATTTGGTTGCACCCTCCACACACTAACA
CATCttcttgtattttattttttataattttttttttaattttagtccCA
TCGTAGAATGTATAATTTATTGATCCGCGAATTTAGaagaatataaaata
aaaagtcggaAATTCTTAAAACAGAATTTTAAAATGTACATCATTTTTTT
CCAGGACAGGAATGGGTTTTATTCCTGTAATTTCTTTTAGATGAAAGTCT
TCGGAAATAAATCTTGTTTTTATGTGActaaaaacttacaaaaaacGTTT
TCGGTGAAGAGTCAGAATTAAAAGTGCTTTGTATGTCGTGAAAGTAATAT
TCAAACCGTCattctgatattttttttcaactaaATTTATGGACGAGTTT
GAGTTCgagaatatttttaacattgatttattcaattttactttCCAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00008250TCONS_00008250Clytia hemisphaericatranscript
TCONS_00008251TCONS_00008251Clytia hemisphaericatranscript
TCONS_00008252TCONS_00008252Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00008250-proteinTCONS_00008250-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:78255..87152 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
ALDH1A2retinal dehydrogenase 2 isoform 1 Homo Sapiens
ALDH1A1retinal dehydrogenase 1 Homo Sapiens
ALDH2aldehyde dehydrogenase, mitochondrial isoform 1 precursor Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.66	33.71	11.88	10	135.59	109.77	201.07	210.3	227.55	227.22	240.49	199.07	375.03	397.54	313.98	336.66	241.54	229.62	330.37	298.71	200.34	202.63	184.02	189.26	185.9	176.14	203.14	221.43	238.04	212.12