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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008247 ID=TCONS_00008247|Name=TCONS_00008247|organism=Clytia hemisphaerica|type=transcript|length=1617bp
CCGGATTTAACACGTAACCGCCGGCGCAATTCTTTGTCTATACAATATCA
TGTATGTTCCAAATTAGATTTGTATCCAAACAAATACCTACTCTTTTGTT
ACAATTCCTCCTTTTAACGTCATGGAAAAGGAAATGGTAGACTAAGCTGT
AGGAGTATAAATAAGGGTGtaatttgagtttgaaaatcaaatcaGCTTTG
GTTCAGTTTGGCTTTCTTGATTAAGAAAGAACATCTGAACACTTTGTGCT
TTTTTGTGTTGGTTGGTCAACGAACGAAACTTTGCGATTCTACTTATTTG
ATATCATTTGCtgttaaaaaagaagaaatctttTCTTGCACGCATTTTTG
ACAATAAATAATACACTAAAGTAGATCGAGATGGTTTCTATTATCAAAGC
CCTTCTTTTTTCATCACTGCTCATTGCATTCACATACGGACAAGAATGTA
AAAACAGCCATTGGCGTTGTGATAGTTACCACGCCAAACAAGGGGCGGCA
TATTTGAAAAGAGAATGCGGTAATAGTCGATCAAAAGTCGCACGATATTG
TAAGAAATTATGTGGTTTGTGTGACGGTGAAGTTAagaccacaacaacaa
caacaacaaaaacaacaccaacaacaacaacaaccacaacaGGTGATTGT
AAGGACGAAACAAGGAGCTGTAAACAATGGAAGCAATATTGTACCACAAG
TCCATTCACGCAAAAAAGCTGCAGAAAAACATGCGGTCTTTGCGATGGAG
GAaaaacaacaacgaccactacTAAAAAGCCTATGACCACCACCAAAAAA
ACTACTACAACCACCACCAAAAGACCGgccaccaccaagaaaattactAC
GACCACCACAAAAAAGCCGaccaccaccaagaaaattactACGACCACCA
CCAAAAAACCTGTTACAGTTAACCCACCAGCAGGAgGATGTGGAGACAAA
ATGTTTTATTGCTTCTTGAAAGAGATGTTCAAGCCAGCACAACATTGCTC
AGGATCACATGCCGATATCTGTATCCGATCCTGTGGAAGATGCAATGGTC
CAGATAACCAGAAATGCGCAAACTTGACCGATCGTGACCCACAATGCAGT
CAACGCGATTGCCGTGCATCGAATCTCATCGAACGAAATCGTGCACACGT
TAAATGTGCTAAATATTGTTGTATGCGAGGTGAATTGTATTAAGTGATTT
TTCACTCCCcattcaataaattttgttaaCCTTTTACGGGTCCCAAAAGA
AGGCCCTATTGTTAAGggataaaaactaaaaaagccAACTTTCGAAATCA
AAGAACCTTTGTTAATTTAAAGACTTTCGCTCttgatcaaaactcaaaat
aaacGCCTGAGACTTCTCTCTCGGCTTTTGCCTTTGAGGTTTTTAACCCT
AACCCTTTAAACCCTAAAACAcgatatttttttgtgatttacaAAAATCT
ACTCTATTTATGAGATTATTTAATAACAATCCttggtattttatttatta
aaaaacgattatttattgaatttaaattttatatCCTTAAAATATTACTG
CACTGTGAGTGTAATTTCTTTAGctatttcaatttttgtatTACTCTATT
TTAAAAGGGAAAGATTA Run BLAST on NCBI protein sequence of TCONS_00008247-protein >TCONS_00008247-protein ID=TCONS_00008247-protein|Name=TCONS_00008247-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MVSIIKALLFSSLLIAFTYGQECKNSHWRCDSYHAKQGAAYLKRECGNSR
SKVARYCKKLCGLCDGEVKTTTTTTTKTTPTTTTTTTGDCKDETRSCKQW
KQYCTTSPFTQKSCRKTCGLCDGGKTTTTTTKKPMTTTKKTTTTTTKRPA
TTKKITTTTTKKPTTTKKITTTTTKKPVTVNPPAGGCGDKMFYCFLKEMF
KPAQHCSGSHADICIRSCGRCNGPDNQKCANLTDRDPQCSQRDCRASNLI
ERNRAHVKCAKYCCMRGELY Run BLAST on NCBI transcript from alignment at sc0000084:7522..10435+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008247 ID=TCONS_00008247|Name=TCONS_00008247|organism=Clytia hemisphaerica|type=transcript|length=2914bp|location=Sequence derived from alignment at sc0000084:7522..10435+ (Clytia hemisphaerica)
CCGGATTTAACACGTAACCGCCGGCGCAATTCTTTGTCTATACAATATCA
TGTATGTTCCAAATTAGATTTGTATCCAAACAAATACCTACTCTTTTGTT
ACAATTCCTCCTTTTAACGTCATGGAAAAGGAAATGGTAGACTAAGCTGT
AGGAGTATAAATAAGGGTGtaatttgagtttgaaaatcaaatcaGCTTTG
GTTCAGTTTGGCTTTCTTGATTAAGAAAGAACATCTGAACACTTTGTGCT
TTTTTGTGTTGGTTGGTCAACGAACGAAACTTTGCGATTCTACTTATTTG
ATATCATTTGCtgttaaaaaagaagaaatctttTCTTGCACGCATTTTTG
ACAATAAATAATACACTAAAGTAGATCGAGATGGTTTCTATTATCAAAGC
CCTTCTTTTTTCATCACTGCTCATTGGTAAGATCTTACTGTAGTTCTTTA
TGTTTAGTTTCTCTTGCTTTACCTGATTAAAAACCAGTGGACAAACTCTT
GAGTGCAACAgctagaatttgaaaaaaagctaCTACTGACTTTTTAGAAC
TCGAAGTCCAATGCTAGAATGTAATGGCACTGTAAAATATGACaaaaagt
tatttcaaaattcatctaAATATTTGATAGATTTTGTTTCGTACTTTAAG
GAGAAATAGAAAGAagatagacgatgctatcgtacGCTACACTCTCCGTG
ACACTCCGTCCCGGGCgggatcactttcgtttttaattTCTCCTGCATCC
TATTGTATCATTCTCTTTTTAGTGACCCTGCAGCCGATAGGATCGTATAA
AAAGAAAACTGCTCCAAATAATATTCTAAAAGTTTCTTAATTTCTTGACT
TTCTTTTCTCTCAGCATTCACATACGGACAAGAATGTAAAAACAGCCATT
GGCGTTGTGATAGTTACCACGCCAAACAAGGGGCGGCATATTTGAAAAGA
GAATGCGGTAATAGTCGATCAAAAGTCGCACGATATTGTAAGAAATTATG
TGGTTTGTGTGACGGTGAAGTTAagaccacaacaacaacaacaacaaaaa
caacaccaacaacaacaacaaccacaacaGGTACTTTTTTATAGAACCAT
TGTAATTTTGTTGAAACCCTGCTATTTTTATTTATCTGAGCTCCGAGCTT
TGAATTGTTATATTCGGTCCATATTTCTTAAATATATATCTTTTTGTAGT
ACAGTTTAGtctcgaacctctacaacttGAATgtctcccagctggcacac
aacgtttattcaacgtcaatttaatgttcacaacgtccatttaacgttag
atgaacgttgaaacaacgttgtgtgtcagctgggctCTTTTACATGTTTA
CCAGTCCTTTAAAAACCTTACTTCATATCTAgaaatttccataactcgaa
caaatttgtgcccCCTTGCAGATTCGAGTTATGATGACTCTAATATACCA
ACGTTGATTCGTAATTTGCTTAAATTTAGCCGTCCTGGGTATATTTATTC
TCAAATTGTTACTTTAGGCGGTTAGGAATTttcaaatattggaaaaaagt
aagaaataaTATCACATGCATCTAAGAAACTAAACGAACCCTTTTTTCTC
CATAGGTGATTGTAAGGACGAAACAAGGAGCTGTAAACAATGGAAGCAAT
ATTGTACCACAAGTCCATTCACGCAAAAAAGCTGCAGAAAAACATGCGGT
CTTTGCGATGGAGGAaaaacaacaacgaccactacTAAAAAGCCTATGAC
CACCACCAAAAAAACTACTACAACCACCACCAAAAGACCGgccaccacca
agaaaattactACGACCACCACAAAAAAGCCGaccaccaccaagaaaatt
actACGACCACCACCAAAAAACCTGTTACAGTTAACCCACCAGCAGGAgg
tataaaaaaacattctttattcaaaaaaataaaaaacagaaacTTCATAG
AATCTAACACTAGGTAGATGTTGGAAAATAATCTGAACACTAATTTTAAA
GCATTGTCAAACCTTCCTTTATCAAGCACCTATATTAAGAGTATGGTTTC
CACAAGAATAAAACCACCACATAATCACACCGCTTcatttaaaagaagaa
attttaagcagaaaaaaaatctggcagATTTGTCGAATTTACccgaaatc
cgccaaatcaaaaacttttttcgcCATCCGCCAAATGAAATTCCAGTCAA
ATGTaatcaatgtttattttttcatattaaCAGGATGTGGAGACAAAATG
TTTTATTGCTTCTTGAAAGAGATGTTCAAGCCAGCACAACATTGCTCAGG
ATCACATGCCGATATCTGTATCCGATCCTGTGGAAGATGCAATGGTCCAG
ATAACCAGAAATGCGCAAACTTGACCGATCGTGACCCACAATGCAGTCAA
CGCGATTGCCGTGCATCGAATCTCATCGAACGAAATCGTGCACACGTTAA
ATGTGCTAAATATTGTTGTATGCGAGGTGAATTGTATTAAGTGATTTTTC
ACTCCCcattcaataaattttgttaaCCTTTTACGGGTCCCAAAAGAAGG
CCCTATTGTTAAGggataaaaactaaaaaagccAACTTTCGAAATCAAAG
AACCTTTGTTAATTTAAAGACTTTCGCTCttgatcaaaactcaaaataaa
cGCCTGAGACTTCTCTCTCGGCTTTTGCCTTTGAGGTTTTTAACCCTAAC
CCTTTAAACCCTAAAACAcgatatttttttgtgatttacaAAAATCTACT
CTATTTATGAGATTATTTAATAACAATCCttggtattttatttattaaaa
aacgattatttattgaatttaaattttatatCCTTAAAATATTACTGCAC
TGTGAGTGTAATTTCTTTAGctatttcaatttttgtatTACTCTATTTTA
AAAGGGAAAGATTA Coding sequence (CDS) from alignment at sc0000084:7522..10435+ >TCONS_00008247 ID=TCONS_00008247|Name=TCONS_00008247|organism=Clytia hemisphaerica|type=CDS|length=3252bp|location=Sequence derived from alignment at sc0000084:7522..10435+ (Clytia hemisphaerica)
ATGGTTTCTATTATCAAAGCCCTTCTTTTTTCATCACTGCTCATTGCATT
CACATACGGACAAGAATGTAAAAACAGCCATTGGCGTTGTGATAGTTACC
ACGCCAAACAAGGGGCGGCATATTTGAAAAGAGAATGCGGTAATAGTCGA
TCAAAAGTCGCACGATATTGTAAGAAATTATGTGGTTTGTGTGACGGTGA
AGTTAagaccacaacaacaacaacaacaaaaacaacaccaacaacaacaa
caaccacaacaGGTGATTGTAAGGACGAAACAAGGAGCTGTAAACAATGG
AAGCAATATTGTACCACAAGTCCATTCACGCAAAAAAGCTGCAGAAAAAC
ATGCGGTCTTTGCGATGGAGGAaaaacaacaacgaccactacTAAAAAGC
CTATGACCACCACCAAAAAAACTACTACAACCACCACCAAAAGACCGgcc
accaccaagaaaattactACGACCACCACAAAAAAGCCGaccaccaccaa
gaaaattactACGACCACCACCAAAAAACCTGTTACAGTTAACCCACCAG
CAGGAgGATGTGGAGACAAAATGTTTTATTGCTTCTTGAAAGAGATGTTC
AAGCCAGCACAACATTGCTCAGGATCACATGCCGATATCTGTATCCGATC
CTGTGGAAGATGCAATGGTCCAGATAACCAGAAATGCGCAAACTTGACCG
ATCGTGACCCACAATGCAGTCAACGCGATTGCCGTGCATCGAATCTCATC
GAACGAAATCGTGCACACGTTAAATGTGCTAAATATTGTTGTATGCGAGG
TGAATTGTATTAAATGGTTTCTATTATCAAAGCCCTTCTTTTTTCATCAC
TGCTCATTGCATTCACATACGGACAAGAATGTAAAAACAGCCATTGGCGT
TGTGATAGTTACCACGCCAAACAAGGGGCGGCATATTTGAAAAGAGAATG
CGGTAATAGTCGATCAAAAGTCGCACGATATTGTAAGAAATTATGTGGTT
TGTGTGACGGTGAAGTTAagaccacaacaacaacaacaacaaaaacaaca
ccaacaacaacaacaaccacaacaGGTGATTGTAAGGACGAAACAAGGAG
CTGTAAACAATGGAAGCAATATTGTACCACAAGTCCATTCACGCAAAAAA
GCTGCAGAAAAACATGCGGTCTTTGCGATGGAGGAaaaacaacaacgacc
actacTAAAAAGCCTATGACCACCACCAAAAAAACTACTACAACCACCAC
CAAAAGACCGgccaccaccaagaaaattactACGACCACCACAAAAAAGC
CGaccaccaccaagaaaattactACGACCACCACCAAAAAACCTGTTACA
GTTAACCCACCAGCAGGAgGATGTGGAGACAAAATGTTTTATTGCTTCTT
GAAAGAGATGTTCAAGCCAGCACAACATTGCTCAGGATCACATGCCGATA
TCTGTATCCGATCCTGTGGAAGATGCAATGGTCCAGATAACCAGAAATGC
GCAAACTTGACCGATCGTGACCCACAATGCAGTCAACGCGATTGCCGTGC
ATCGAATCTCATCGAACGAAATCGTGCACACGTTAAATGTGCTAAATATT
GTTGTATGCGAGGTGAATTGTATTAAATGGTTTCTATTATCAAAGCCCTT
CTTTTTTCATCACTGCTCATTGCATTCACATACGGACAAGAATGTAAAAA
CAGCCATTGGCGTTGTGATAGTTACCACGCCAAACAAGGGGCGGCATATT
TGAAAAGAGAATGCGGTAATAGTCGATCAAAAGTCGCACGATATTGTAAG
AAATTATGTGGTTTGTGTGACGGTGAAGTTAagaccacaacaacaacaac
aacaaaaacaacaccaacaacaacaacaaccacaacaGGTGATTGTAAGG
ACGAAACAAGGAGCTGTAAACAATGGAAGCAATATTGTACCACAAGTCCA
TTCACGCAAAAAAGCTGCAGAAAAACATGCGGTCTTTGCGATGGAGGAaa
aacaacaacgaccactacTAAAAAGCCTATGACCACCACCAAAAAAACTA
CTACAACCACCACCAAAAGACCGgccaccaccaagaaaattactACGACC
ACCACAAAAAAGCCGaccaccaccaagaaaattactACGACCACCACCAA
AAAACCTGTTACAGTTAACCCACCAGCAGGAgGATGTGGAGACAAAATGT
TTTATTGCTTCTTGAAAGAGATGTTCAAGCCAGCACAACATTGCTCAGGA
TCACATGCCGATATCTGTATCCGATCCTGTGGAAGATGCAATGGTCCAGA
TAACCAGAAATGCGCAAACTTGACCGATCGTGACCCACAATGCAGTCAAC
GCGATTGCCGTGCATCGAATCTCATCGAACGAAATCGTGCACACGTTAAA
TGTGCTAAATATTGTTGTATGCGAGGTGAATTGTATTAAATGGTTTCTAT
TATCAAAGCCCTTCTTTTTTCATCACTGCTCATTGCATTCACATACGGAC
AAGAATGTAAAAACAGCCATTGGCGTTGTGATAGTTACCACGCCAAACAA
GGGGCGGCATATTTGAAAAGAGAATGCGGTAATAGTCGATCAAAAGTCGC
ACGATATTGTAAGAAATTATGTGGTTTGTGTGACGGTGAAGTTAagacca
caacaacaacaacaacaaaaacaacaccaacaacaacaacaaccacaaca
GGTGATTGTAAGGACGAAACAAGGAGCTGTAAACAATGGAAGCAATATTG
TACCACAAGTCCATTCACGCAAAAAAGCTGCAGAAAAACATGCGGTCTTT
GCGATGGAGGAaaaacaacaacgaccactacTAAAAAGCCTATGACCACC
ACCAAAAAAACTACTACAACCACCACCAAAAGACCGgccaccaccaagaa
aattactACGACCACCACAAAAAAGCCGaccaccaccaagaaaattactA
CGACCACCACCAAAAAACCTGTTACAGTTAACCCACCAGCAGGAgGATGT
GGAGACAAAATGTTTTATTGCTTCTTGAAAGAGATGTTCAAGCCAGCACA
ACATTGCTCAGGATCACATGCCGATATCTGTATCCGATCCTGTGGAAGAT
GCAATGGTCCAGATAACCAGAAATGCGCAAACTTGACCGATCGTGACCCA
CAATGCAGTCAACGCGATTGCCGTGCATCGAATCTCATCGAACGAAATCG
TGCACACGTTAAATGTGCTAAATATTGTTGTATGCGAGGTGAATTGTATT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008247-exon-sc0000084-1491911889:7522..7947 | TCONS_00008247-exon-sc0000084-1491911889:7522..7947 | Clytia hemisphaerica | exon |
| TCONS_00008247-exon-sc0000084-1510915933:7522..7947 | TCONS_00008247-exon-sc0000084-1510915933:7522..7947 | Clytia hemisphaerica | exon |
| TCONS_00008247-exon-sc0000084-1575043694:7522..7947 | TCONS_00008247-exon-sc0000084-1575043694:7522..7947 | Clytia hemisphaerica | exon |
| TCONS_00008247-exon-sc0000084-1491911889:8386..8601 | TCONS_00008247-exon-sc0000084-1491911889:8386..8601 | Clytia hemisphaerica | exon |
| TCONS_00008247-exon-sc0000084-1510915933:8386..8601 | TCONS_00008247-exon-sc0000084-1510915933:8386..8601 | Clytia hemisphaerica | exon |
| TCONS_00008247-exon-sc0000084-1575043694:8386..8601 | TCONS_00008247-exon-sc0000084-1575043694:8386..8601 | Clytia hemisphaerica | exon |
| TCONS_00008247-exon-sc0000084-1491911889:9127..9420 | TCONS_00008247-exon-sc0000084-1491911889:9127..9420 | Clytia hemisphaerica | exon |
| TCONS_00008247-exon-sc0000084-1510915933:9127..9420 | TCONS_00008247-exon-sc0000084-1510915933:9127..9420 | Clytia hemisphaerica | exon |
| TCONS_00008247-exon-sc0000084-1575043694:9127..9420 | TCONS_00008247-exon-sc0000084-1575043694:9127..9420 | Clytia hemisphaerica | exon |
| TCONS_00008247-exon-sc0000084-1491911889:9755..10435 | TCONS_00008247-exon-sc0000084-1491911889:9755..10435 | Clytia hemisphaerica | exon |
| TCONS_00008247-exon-sc0000084-1510915933:9755..10435 | TCONS_00008247-exon-sc0000084-1510915933:9755..10435 | Clytia hemisphaerica | exon |
| TCONS_00008247-exon-sc0000084-1575043694:9755..10435 | TCONS_00008247-exon-sc0000084-1575043694:9755..10435 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:7522..10435 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003582 | ShKT_dom |
Blast
The following BLAST results are available for this feature:
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