TCONS_00008235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008235
Unique NameTCONS_00008235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2631

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008235 ID=TCONS_00008235|Name=TCONS_00008235|organism=Clytia hemisphaerica|type=transcript|length=2631bp
ttgcTTTACATAAAgttgttttaaaaaattctaaaatcctaaactaaaag
aaaatatcatttaATCTTTGCTAATGAAAtcgatattttttttcagaaag
tacAACAACTACGGTACAAAAAAATGTTTGCCAGTAAAAGACGGATTTAT
CATGATGCAGGAAACCCATTGTAACCATAGTGTTCTTTATAAATTCAAAC
ATTCtgaaatcaaataaaaagaGAATCAAGACTTATTAATTTTAGGAAAT
ATCAAGTAGATTGTAATAAATTTTCTAGTAATAATCTTCATAAGCCTCGT
TATACATTTTCAGATAAGCATCGTGCTCTTCCGAACTCATTTTCTCAATA
ATTTCATCATTGACATCAGCCAATGCGTATTGTTTATCTCCAACTTTGAC
CATCACTTCGCTCTCCTCCTCCTCATCCTCGCTCTCCATCATGTGATCAA
CGTCAGTTACACCCTCACTGGCAGTGGCTATTTGCGCTATCTTCTGCTCA
GGGCTTGGTGTACTCTCTGAATCAGAGCTTGACTCTTCCTTTTTATTACC
AAGACCTAGATCCTTATCAAGGCGAGGTTTCTTACTTTCGTGAGCCAACA
GGTGAGACATGATATCATCTTCTTCATCCTTATTGACAATACTTGCAACC
GGTTCTTCAATGGTCTCAGGAATAACTGGAGTGTCACTTCCTTTAAGAAC
ACTTCCTAGACTAGAAACACTATCATTGGATTCTTCATTCAACACAGTAC
TCTCTGACATCCAGACAGGTACAACTTTTGCTTTCTTTGCTTCTTTATTA
GCATCCACTTCTTCTCGTACATTGATTTGGATATTTTGGTCGTAAAGATC
CCTGGAGGCTTTATTGGTCCATCCAGATTTGTTGCTACTACTAGATGAAG
ATTTGCCAGCCGATGCTTTGATTGCAGCTGTTGAAGGAGTTGGTTCAAGA
ACTTCAGGAGCGAGATTGATTTTCTCACATTCTcttaaaagagagaaaat
agaTTCCATTTGCTCATTAAAACGACCAAGAGAGGAGCCTTTTGTTTGAG
TGTTTATGTGATTGGCATCCTCTTCAACGTCTCCATTACAATAAGAACAT
CTCATCATTCCTGTTTGAAAGTCCAATAATCGATCAACTTCTAAGTCAGA
GTAGTGCTTGTGACAGTGCAGACAAATAAAGGATGGCCTATTCCGAGCCT
GTTGCTCCTCATTCTCAAGTTTACGCCTTATGTGATCCAGTTTGTACTTC
ACAACATTGacaaaaagtttataattaatgAAGTAGAAATTATAAATGTT
AAAGTTAGACGAGTCTTGTTGTTTCTCTTTGATTTGGCGTTGTTTTACAA
GCTTGTCATTCTTCAATCTTGAAAGAACTGTTCGAAGCTGTCTTTTgtca
aaatgaagtttttctAAAATAGTGTCCTCATCCACACAAGGGTAATTGGT
GAGCAAACTGATTGCCACAACTAGCTCTGGTTCATAAAATGCATAAGCTA
CTGTTTTCGCAAAACGTTTAAGAATGGGTGGCACTTCTGAGAGTAGTTCA
GGCTCCTCCATTTGTCGTACTGCATCTTCTGTGTTCATTATGATAAACTT
TTCTAAAAGAAGCAGCATAAAGTTATTATTCATGCATGAAATACACCCAT
TTTACCTCAACAAGTCACCCAGAAATTAACAGTATGTaaaatagagcagt
aaaaagtacaacttttttcccttttattttgtaaaagttccagaaatgaa
aataaaaagataaaatcatACTGTAACTGTAAAAGTTAGTATCAAAACAG
TGAAAAGGAAAAACTTATTATAATAATCATCCAGGCGGTTGGGCTGGATA
GGATTGATAAAAGGAACAAAGCGATGAAGCATtgataaaagattaataaa
ttACTCGATTTCGATAAAGGATGGATAGAAGATTGTGCCTAATAGTACTT
ATATCTTAGATAGGAGTATttgtaaaattcaaaacattgttCCTATCTAG
GCGGTTACTCCTGACTGTTTCTAGGGTTTTGTGCTgctaccatttttatt
tcaaagattgaGTTTGAATTCAGTTCAAGGAACAAAATCAACCCAGGCTC
tgaacaaaaaagtcaaaatcagaGGCATCAACACAGCCACAGCAGacaaa
aattagataaaacaATATACATTTTCTTCTAGATCTGCAGAGTGCGCTCT
ATGATATCAGAGCttgttcaaattaaaagaaagagactttgattcagtca
actgctctaacttgggacaattggtcgTAATATGGGACTGTTGGTATCTG
Gccagtattttcacttactgttaaatctctttgacaacaaatttgttttg
ataactccgcCAAGTTTATCAGTCacggaaatccttgcatttgcacaggG
TTCGATATGCGGCAAATGTAAAGggtcaaaaacgaaagtgacaaaAAAAA
CCCGTGCAAATACACTCCATCACTGCGACCCGTTGCATTTACACAGAGTG
GAAAAATTTACACTTAATTATTAAAAAATGCacagatcaaaatttaaccc
gtagacaaaaattttctaaaaaggctaaagaatcttctaaagagaaaatg
aaaatgccattCGTCTTCGTTTTAtgccatt
Run BLAST on NCBI

protein sequence of TCONS_00008235-protein

>TCONS_00008235-protein ID=TCONS_00008235-protein|Name=TCONS_00008235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MNNNFMLLLLEKFIIMNTEDAVRQMEEPELLSEVPPILKRFAKTVAYAFY
EPELVVAISLLTNYPCVDEDTILEKLHFDKRQLRTVLSRLKNDKLVKQRQ
IKEKQQDSSNFNIYNFYFINYKLFVNVVKYKLDHIRRKLENEEQQARNRP
SFICLHCHKHYSDLEVDRLLDFQTGMMRCSYCNGDVEEDANHINTQTKGS
SLGRFNEQMESIFSLLRECEKINLAPEVLEPTPSTAAIKASAGKSSSSSS
NKSGWTNKASRDLYDQNIQINVREEVDANKEAKKAKVVPVWMSESTVLNE
ESNDSVSSLGSVLKGSDTPVIPETIEEPVASIVNKDEEDDIMSHLLAHES
KKPRLDKDLGLGNKKEESSSDSESTPSPEQKIAQIATASEGVTDVDHMME
SEDEEEESEVMVKVGDKQYALADVNDEIIEKMSSEEHDAYLKMYNEAYED
YY
Run BLAST on NCBI

transcript from alignment at sc0000082:446782..449412

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008235 ID=TCONS_00008235|Name=TCONS_00008235|organism=Clytia hemisphaerica|type=transcript|length=2631bp|location=Sequence derived from alignment at sc0000082:446782..449412 (Clytia hemisphaerica)
aatggcaTAAAACGAAGACGaatggcattttcattttctctttagaagat
tctttagcctttttagaaaatttttgtctacgggttaaattttgatctgt
GCATTTTTTAATAATTAAGTGTAAATTTTTCCACTCTGTGTAAATGCAAC
GGGTCGCAGTGATGGAGTGTATTTGCACGGGTTTTTtttgtcactttcgt
ttttgaccCTTTACATTTGCCGCATATCGAACcctgtgcaaatgcaagga
tttccgtGACTGATAAACTTGgcggagttatcaaaacaaatttgttgtca
aagagatttaacagtaagtgaaaatactggCCAGATACCAACAGTCCCAT
ATTAcgaccaattgtcccaagttagagcagttgactgaatcaaagtctct
ttcttttaatttgaacaaGCTCTGATATCATAGAGCGCACTCTGCAGATC
TAGAAGAAAATGTATATtgttttatctaatttttgtCTGCTGTGGCTGTG
TTGATGCCtctgattttgacttttttgttcaGAGCCTGGGTTGATTTTGT
TCCTTGAACTGAATTCAAACtcaatctttgaaataaaaatggtagcAGCA
CAAAACCCTAGAAACAGTCAGGAGTAACCGCCTAGATAGGaacaatgttt
tgaattttacaaATACTCCTATCTAAGATATAAGTACTATTAGGCACAAT
CTTCTATCCATCCTTTATCGAAATCGAGTaatttattaatcttttatcaA
TGCTTCATCGCTTTGTTCCTTTTATCAATCCTATCCAGCCCAACCGCCTG
GATGATTATTATAATAAGTTTTTCCTTTTCACTGTTTTGATACTAACTTT
TACAGTTACAGTatgattttatctttttattttcatttctggaactttta
caaaataaaagggaaaaaagttgtactttttactgctctattttACATAC
TGTTAATTTCTGGGTGACTTGTTGAGGTAAAATGGGTGTATTTCATGCAT
GAATAATAACTTTATGCTGCTTCTTTTAGAAAAGTTTATCATAATGAACA
CAGAAGATGCAGTACGACAAATGGAGGAGCCTGAACTACTCTCAGAAGTG
CCACCCATTCTTAAACGTTTTGCGAAAACAGTAGCTTATGCATTTTATGA
ACCAGAGCTAGTTGTGGCAATCAGTTTGCTCACCAATTACCCTTGTGTGG
ATGAGGACACTATTTTagaaaaacttcattttgacAAAAGACAGCTTCGA
ACAGTTCTTTCAAGATTGAAGAATGACAAGCTTGTAAAACAACGCCAAAT
CAAAGAGAAACAACAAGACTCGTCTAACTTTAACATTTATAATTTCTACT
TcattaattataaactttttgtCAATGTTGTGAAGTACAAACTGGATCAC
ATAAGGCGTAAACTTGAGAATGAGGAGCAACAGGCTCGGAATAGGCCATC
CTTTATTTGTCTGCACTGTCACAAGCACTACTCTGACTTAGAAGTTGATC
GATTATTGGACTTTCAAACAGGAATGATGAGATGTTCTTATTGTAATGGA
GACGTTGAAGAGGATGCCAATCACATAAACACTCAAACAAAAGGCTCCTC
TCTTGGTCGTTTTAATGAGCAAATGGAAtctattttctctcttttaagAG
AATGTGAGAAAATCAATCTCGCTCCTGAAGTTCTTGAACCAACTCCTTCA
ACAGCTGCAATCAAAGCATCGGCTGGCAAATCTTCATCTAGTAGTAGCAA
CAAATCTGGATGGACCAATAAAGCCTCCAGGGATCTTTACGACCAAAATA
TCCAAATCAATGTACGAGAAGAAGTGGATGCTAATAAAGAAGCAAAGAAA
GCAAAAGTTGTACCTGTCTGGATGTCAGAGAGTACTGTGTTGAATGAAGA
ATCCAATGATAGTGTTTCTAGTCTAGGAAGTGTTCTTAAAGGAAGTGACA
CTCCAGTTATTCCTGAGACCATTGAAGAACCGGTTGCAAGTATTGTCAAT
AAGGATGAAGAAGATGATATCATGTCTCACCTGTTGGCTCACGAAAGTAA
GAAACCTCGCCTTGATAAGGATCTAGGTCTTGGTAATAAAAAGGAAGAGT
CAAGCTCTGATTCAGAGAGTACACCAAGCCCTGAGCAGAAGATAGCGCAA
ATAGCCACTGCCAGTGAGGGTGTAACTGACGTTGATCACATGATGGAGAG
CGAGGATGAGGAGGAGGAGAGCGAAGTGATGGTCAAAGTTGGAGATAAAC
AATACGCATTGGCTGATGTCAATGATGAAATTATTGAGAAAATGAGTTCG
GAAGAGCACGATGCTTATCTGAAAATGTATAACGAGGCTTATGAAGATTA
TTACTAGAAAATTTATTACAATCTACTTGATATTTCCTAAAATTAATAAG
TCTTGATTCtctttttatttgatttcaGAATGTTTGAATTTATAAAGAAC
ACTATGGTTACAATGGGTTTCCTGCATCATGATAAATCCGTCTTTTACTG
GCAAACATTTTTTTGTACCGTAGTTGTTgtactttctgaaaaaaaatatc
gaTTTCATTAGCAAAGATtaaatgatattttcttttagtttaggatttta
gaattttttaaaacaacTTTATGTAAAgcaa

Coding sequence (CDS) from alignment at sc0000082:446782..449412

>TCONS_00008235 ID=TCONS_00008235|Name=TCONS_00008235|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at sc0000082:446782..449412 (Clytia hemisphaerica)
ATGAATAATAACTTTATGCTGCTTCTTTTAGAAAAGTTTATCATAATGAA
CACAGAAGATGCAGTACGACAAATGGAGGAGCCTGAACTACTCTCAGAAG
TGCCACCCATTCTTAAACGTTTTGCGAAAACAGTAGCTTATGCATTTTAT
GAACCAGAGCTAGTTGTGGCAATCAGTTTGCTCACCAATTACCCTTGTGT
GGATGAGGACACTATTTTagaaaaacttcattttgacAAAAGACAGCTTC
GAACAGTTCTTTCAAGATTGAAGAATGACAAGCTTGTAAAACAACGCCAA
ATCAAAGAGAAACAACAAGACTCGTCTAACTTTAACATTTATAATTTCTA
CTTcattaattataaactttttgtCAATGTTGTGAAGTACAAACTGGATC
ACATAAGGCGTAAACTTGAGAATGAGGAGCAACAGGCTCGGAATAGGCCA
TCCTTTATTTGTCTGCACTGTCACAAGCACTACTCTGACTTAGAAGTTGA
TCGATTATTGGACTTTCAAACAGGAATGATGAGATGTTCTTATTGTAATG
GAGACGTTGAAGAGGATGCCAATCACATAAACACTCAAACAAAAGGCTCC
TCTCTTGGTCGTTTTAATGAGCAAATGGAAtctattttctctcttttaag
AGAATGTGAGAAAATCAATCTCGCTCCTGAAGTTCTTGAACCAACTCCTT
CAACAGCTGCAATCAAAGCATCGGCTGGCAAATCTTCATCTAGTAGTAGC
AACAAATCTGGATGGACCAATAAAGCCTCCAGGGATCTTTACGACCAAAA
TATCCAAATCAATGTACGAGAAGAAGTGGATGCTAATAAAGAAGCAAAGA
AAGCAAAAGTTGTACCTGTCTGGATGTCAGAGAGTACTGTGTTGAATGAA
GAATCCAATGATAGTGTTTCTAGTCTAGGAAGTGTTCTTAAAGGAAGTGA
CACTCCAGTTATTCCTGAGACCATTGAAGAACCGGTTGCAAGTATTGTCA
ATAAGGATGAAGAAGATGATATCATGTCTCACCTGTTGGCTCACGAAAGT
AAGAAACCTCGCCTTGATAAGGATCTAGGTCTTGGTAATAAAAAGGAAGA
GTCAAGCTCTGATTCAGAGAGTACACCAAGCCCTGAGCAGAAGATAGCGC
AAATAGCCACTGCCAGTGAGGGTGTAACTGACGTTGATCACATGATGGAG
AGCGAGGATGAGGAGGAGGAGAGCGAAGTGATGGTCAAAGTTGGAGATAA
ACAATACGCATTGGCTGATGTCAATGATGAAATTATTGAGAAAATGAGTT
CGGAAGAGCACGATGCTTATCTGAAAATGTATAACGAGGCTTATGAAGAT
TATTACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004629XLOC_004629Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008235-proteinTCONS_00008235-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008235-exon-sc0000082-1491911889:446782..449412TCONS_00008235-exon-sc0000082-1491911889:446782..449412Clytia hemisphaericaexon
TCONS_00008235-exon-sc0000082-1510915933:446782..449412TCONS_00008235-exon-sc0000082-1510915933:446782..449412Clytia hemisphaericaexon
TCONS_00008235-exon-sc0000082-1575043694:446782..449412TCONS_00008235-exon-sc0000082-1575043694:446782..449412Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:446782..449412 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.5832	14.6636	4.90298	3.58034	16.1521	10.8777	10.6345	12.7129	10.0013	9.39725	9.48903	7.34746	8.01146	8.27271	8.91244	10.5419	10.1532	10.0678	4.02432	4.49583	7.90933	7.70107	32.3463	30.5649	10.22	11.1946	7.08583	6.33004	19.2592	21.9409
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002853TFIIE_asu
IPR024550TFIIEa/SarR/Rpc3_HTH_dom
IPR011991WHTH_DNA-bd_dom
IPR021600TFIIE_asu_C
IPR017919TFIIE/TFIIEa_HTH
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
molecular_function GO:0043565 sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00008235 vs. Swiss-Prot (Human)
Match: T2EA (General transcription factor IIE subunit 1 OS=Homo sapiens GN=GTF2E1 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 2.800e-56
Identity = 114/287 (39.72%), Postives = 168/287 (58.54%), Query Frame = -3 
Query:  743 MEEPELLSEVPPILKRFAKTVAYAFYEPELVVAISLLTNYPCVDEDTILEKLHFDKRQLRTVLSRLKNDKLVKQRQIKEKQQDSSXXXXXXXXXXXYKLFVNVVKYKLDHIRRKLENEEQQARNRPSFICLHCHKHYSDLEVDRLLDFQTGMMRCSYCNGDVEEDANHINTQTKGSSLGRFNEQMESIFSLLRECEKINLAPEVLEPTPXXXXXXXXXXXXXXXXXXXXXXXXKASR-----------DLYDQNIQINVREEVD---ANKEAKKAKVVPVWMSESTV 1561
            M +P++L+EVP  LKR AK V   FY  E  +A+ +L    CV E+ +LE L FD++QLR+VL+ LK DK +K R   E   D        ++     L VNVVKYKLDH+RR++E +E+ + NR SF C  C   ++DLE ++L D  TG  RC++C+ +VEED + +  +   + L RFNEQ+E I++LLRE E +NLA E+LEP P+       +   +++++  +       R           DLY QN+ IN+ ++ D   A+ E K AK  P+W+ ESTV
Sbjct:    1 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLRSVLNNLKGDKFIKCRMRVETAADGKTTRHNYYFINYRTL-VNVVKYKLDHMRRRIETDERDSTNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARFNEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQSKDHAATTAGAASLAGGHHREAWATKGPSYEDLYTQNVVINMDDQEDLHRASLEGKSAKERPIWLRESTV 286
The following BLAST results are available for this feature:
BLAST of TCONS_00008235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
T2EA2.800e-5639.72General transcription factor IIE subunit 1 OS=Homo... [more]
back to top