TCONS_00008235-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008235-protein
Unique Name	TCONS_00008235-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	452

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008235-protein ID=TCONS_00008235-protein|Name=TCONS_00008235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MNNNFMLLLLEKFIIMNTEDAVRQMEEPELLSEVPPILKRFAKTVAYAFY
EPELVVAISLLTNYPCVDEDTILEKLHFDKRQLRTVLSRLKNDKLVKQRQ
IKEKQQDSSNFNIYNFYFINYKLFVNVVKYKLDHIRRKLENEEQQARNRP
SFICLHCHKHYSDLEVDRLLDFQTGMMRCSYCNGDVEEDANHINTQTKGS
SLGRFNEQMESIFSLLRECEKINLAPEVLEPTPSTAAIKASAGKSSSSSS
NKSGWTNKASRDLYDQNIQINVREEVDANKEAKKAKVVPVWMSESTVLNE
ESNDSVSSLGSVLKGSDTPVIPETIEEPVASIVNKDEEDDIMSHLLAHES
KKPRLDKDLGLGNKKEESSSDSESTPSPEQKIAQIATASEGVTDVDHMME
SEDEEEESEVMVKVGDKQYALADVNDEIIEKMSSEEHDAYLKMYNEAYED
YY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004629	XLOC_004629	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008235	TCONS_00008235	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002853	TFIIE_asu
IPR024550	TFIIEa/SarR/Rpc3_HTH_dom
IPR011991	WHTH_DNA-bd_dom
IPR021600	TFIIE_asu_C
IPR017919	TFIIE/TFIIEa_HTH

Vocabulary: **Biological Process**
Term	Definition
GO:0006367	transcription initiation from RNA polymerase II promoter

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
molecular_function	GO:0043565	sequence-specific DNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 125..145
None	No IPR available	COILS	Coil	Coil	coord: 87..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 239..258
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 346..410
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 138..194
IPR002853	Transcription initiation factor IIE subunit alpha, N-terminal	SMART	SM00531	tfiie3	coord: 52..200 e-value: 3.1E-32 score: 123.1
IPR024550	TFIIEalpha/SarR/Rpc3 HTH domain	PFAM	PF02002	TFIIE_alpha	coord: 42..147 e-value: 3.1E-18 score: 65.5
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 38..125 e-value: 4.9E-6 score: 25.8
IPR021600	Transcription factor TFIIE alpha subunit, C-terminal	PFAM	PF11521	TFIIE-A_C	coord: 367..452 e-value: 3.4E-12 score: 46.4
IPR017919	Transcription factor TFE/TFIIEalpha HTH domain	PROSITE	PS51344	HTH_TFE_IIE	coord: 38..129 score: 22.395

Blast

[Close]

BLAST of TCONS_00008235-protein vs. Swiss-Prot (Human)
Match: T2EA (General transcription factor IIE subunit 1 OS=Homo sapiens GN=GTF2E1 PE=1 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 3.838e-75
Identity = 156/449 (34.74%), Postives = 245/449 (54.57%), Query Frame = 0

Query:   25 MEEPELLSEVPPILKRFAKTVAYAFYEPELVVAISLLTNYPCVDEDTILEKLHFDKRQLRTVLSRLKNDKLVKQRQIKEKQQDSSNFNIYNFYFINYKLFVNVVKYKLDHIRRKLENEEQQARNRPSFICLHCHKHYSDLEVDRLLDFQTGMMRCSYCNGDVEEDANHINTQTKGSSLGRFNEQMESIFSLLRECEKINLAPEVLEPTPS-TAAIKAS-------AGKSS-SSSSNKSGWTNKAS--RDLYDQNIQINVREEVD---ANKEAKKAKVVPVWMSESTVLNEESNDSVSSLGSVLKGSDTPVIPETIEEPVASIVNKDEEDDIMSHLLAHESKKPRLDKDLGLGNKKEESSSDSESTPSPEQKIAQIATASEGVTDVDHMMESEDEEEESEV-----MVKVGDKQYALADVND--EIIEKMSSEEHDAYLKMYNEAYEDYY 452
            M +P++L+EVP  LKR AK V   FY  E  +A+ +L    CV E+ +LE L FD++QLR+VL+ LK DK +K R   E   D      +N+YFINY+  VNVVKYKLDH+RR++E +E+ + NR SF C  C   ++DLE ++L D  TG  RC++C+ +VEED + +  +   + L RFNEQ+E I++LLRE E +NLA E+LEP P+   A+K S       AG +S +   ++  W  K     DLY QN+ IN+ ++ D   A+ E K AK  P+W+ ESTV     ++ +   G         +  +  +E        D+ +++M  LL HE KK        +G     ++++   + S   +    +        V    E E+E++E E      +V V  + ++ ++V+   E++ +M+ EE +AY+ M    +ED +
Sbjct:    1 MADPDVLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLRSVLNNLKGDKFIKCRMRVETAADGKTTR-HNYYFINYRTLVNVVKYKLDHMRRRIETDERDSTNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMPKKDARTLLARFNEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQSKDHAATTAGAASLAGGHHREAWATKGPSYEDLYTQNVVINMDDQEDLHRASLEGKSAKERPIWLRESTVQGAYGSEDMKEGG---------IDMDAFQEREEGHAGPDDNEEVMRALLIHE-KKTSSAMAGSVGAAAPVTAANGSDSESETSESDDDSPPRPAAVAVHKREEDEEEDDEFEEVADDPIVMVAGRPFSYSEVSQRPELVAQMTPEEKEAYIAMGQRMFEDLF 438

The following BLAST results are available for this feature:

BLAST of TCONS_00008235-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008235-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
T2EA	3.838e-75	34.74	General transcription factor IIE subunit 1 OS=Homo...	[more]

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TCONS_00008235-protein (polypeptide) - C. hemisphaerica