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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008184 ID=TCONS_00008184|Name=TCONS_00008184|organism=Clytia hemisphaerica|type=transcript|length=1428bp
ataaatattttaaaatgaaaaattttgacaaCGCAGCATTGTTTCAAGCC
ATGTCGGAAGAGATGGCTGATCTGGGAAATATTGTTGTCTTAGAGTCAGT
TATTTGGTCCAAAGCAAAcctgtgatgacgtcattcaataTAGACAATTC
CACGTTGTTGCATAGAAACCAAACCTTCTTCATGAGCAGCCTGCTTCCAC
CATCAGAACCGCCTNCCACGTTGTTGCATAGGAACCAAACCTTCTTCATG
AGCAGCCTGCTTCCACCATCAGAACCGCCTACCGCCCTCAACCATTCATT
ATCCTTCGTCAATGTGGTCAGCCTTTTGATGCTGGGAACGTTGGTGATTT
GCATCATCGGAGGGAACGTTCTTGTCATCAGTGCTTTCATGACCAACGGG
AGGAAGATCCAGACTATCACAAACTATTTTGTCGTCTCACTGGCGGTCTC
TGATATTTTGGTGGGAGTATTCTCCGTACCTTTTTGGATGCTGGTCGAAA
TaaaccACGAACAGTCATCTAGTCTGCCACATATCGTCTTTCTTGCTTTG
GACGTCATGTTAGGTGTGGCATCGATCGTCCATCTAACTGTCATTAGTTT
AGAGAGATTGTTTGCCGTCATCCGCCCTGCCACCCATCGCAACTTATCCC
GCCAAACGCACTTGGTTCGTATCGCTGTCTTCGCTGTTTGGGGCTTCGCC
ATCGTCAATTCTGCGTTATCTTTCGTGAAAACGTACTACGGGTGGAAGGC
GTATAATATTTACATCGTGGTGATTGGCTTTGTGGTCCCCGCCCTCATTA
TTGTCTGTTCGTATGTGGCTATCTACCGCGTGGCCCAACAACATATCTCc
gaacaaaagaaattgaaacaagAAATGCGATTGGCTGGAATGATCgctat
tgttattattttgttcATAGTTTGTTGGTTCCCATTCTTCCTCATTAACA
TTTTGTACGAATATTGTTACCCTCCAGAATGCAGTCACGTCATTATCGAA
AAATCGATCCCTTTCGTCAAGTTTTTGCATTACTCCAACTCTATGATGAA
CCCCTTGGTTTACGCGTACCGAAATTCGGACTATAGACAAGCTTTCAAGA
ATCTTCTCCTTTCTTTGTTGAAAAGACAAGCATTGAGAAAAAGATCAGCT
TCGGGTCTATCTTCGGGCACAGGACGCTCAGATCTTGATGACTTCATGGA
CTCGGTACAGAATTTGAATCAAATGAGCAAGCATGAATCTGCCGTGTAAA
ATCTCTCCAAACAACCTCTCATGAAGTAGAAGGAGGAGGAGATGAAAGAG
AAAACTTTCTgtttaaacatttttcaaacatttcaaaCTGACTTCTCCTT
TTTTTGTGAAGGTTTAATTTGATTATAAATCTAAGGTGCAATTTTAAGAA
ATATAAGAATATCTAACCAAGGCAATTC Run BLAST on NCBI transcript from alignment at sc0000082:534727..537261- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008184 ID=TCONS_00008184|Name=TCONS_00008184|organism=Clytia hemisphaerica|type=transcript|length=2535bp|location=Sequence derived from alignment at sc0000082:534727..537261- (Clytia hemisphaerica)
ATAAATATTTTAAAATGAAAAATTTTGACAACGCAGCATTGTTTCAAGCC
ATGTCGGAAGAGATGGCTGATCTGGGAAATATTGTTGTCTTAGAGTCAGT
TATTTGGTCCAAAGGTATTGTTAATTTTCTCTCATTCCCCGTGAGTATCT
ATTTCGCCAATTAGAACGATTTCATTCGTTTTTTTTCTTGTCTGCAACAA
ACCCGATATTTGCAGGAACTGCTGAATTAATTTCTATGATCTATAAGTGT
TTGCTGTTTTTTGTCAATTTATCATAGTTTAATTTATCGAGCTTTTTTTT
TTCTTCTCCTCGAACAGTATTTAAATACTTCGGTTGACAAACAAGCAAAA
GAAACGATATTTTCCTGTTCGCCGATAAAAAGCAAAGTATCCGCTCATTA
ATTATTGACTTTGAAAAAGTTCAAGCAAGAAAACATTTTTTTGTTATTTT
TCATTTTGGATACAAAGTATCAGAGGGGAAAGATTTTCTTCTTATTTCTA
CCAATATTGCAGTCGAAGAATCATGAATAATTGAAGGTGCAGCTTTTGTT
GTTTTGCCTTTTTCTCCTCAGCTTCATCTCTTATTTTCGCATCTCCTCTT
TTCTTTTTCTTCGTCGTTAAAAACATTTTGATGTGATTGGACTTCATCTC
AACTTCATGTCGTGAAAAGGTAAACGAGGAAAATGGACAACGTTTTTAAT
TTAAAATTCCAAAGTCTGCATTCTAGCTCTTTCAATCAATGTCGAATCTT
TGCATTAGCTTGCTTCAGATATGCTCGCATTCATGTTTTCCCCAACATTC
AACTCAGTTGTATTAGTTAATATAACCCTCCCCCATTTTGACAGCTTTCA
CAACTCATCTTATTTCATTTTGGATATGGAATTTTTTTCAAACCTGGGGA
AACTGGGGTCAATTCTCATTGTGATCATTTTTAGGATATCGTAAAAATCA
AAATCATAAAATTCAATCGCAACGATTCTAAAATATCACTCCGTTTTCAG
CAAACCTGTGATGACGTCATTCAATATAGACAATTCCACGTTGTTGCATA
GAAACCAAACCTTCTTCATGAGCAGCCTGCTTCCACCATCAGAACCGCCT
NCCACGTTGTTGCATAGGAACCAAACCTTCTTCATGAGCAGCCTGCTTCC
ACCATCAGAACCGCCTACCGCCCTCAACCATTCATTATCCTTCGTCAATG
TGGTCAGCCTTTTGATGCTGGGAACGTTGGTGATTTGCATCATCGGAGGG
AACGTTCTTGTCATCAGTGCTTTCATGACCAACGGGAGGAAGATCCAGAC
TATCACAAACTATTTTGTCGTCTCACTGGCGGTCTCTGATATTTTGGTGG
GAGTATTCTCCGTACCTTTTTGGATGCTGGTCGAAATAAGTAAGATTTTT
TTTATGTGAATGAAAATGAAAGTTCTGTCAAGGATATTTCGAGTGTGAAA
GTTTATCAGTGATTTGCGTTTATTGTTTATTTCCAACAATTCAAAATATC
CACAAGTACCCATTTACCATTACTCTACCATTATTGCTAGAATTCGCAGC
TAAGCATGCTTTGATAATTGAATAAGCAGATCTCGTCATTTTCTTTTTTC
TTTTTTTCAGACCACGAACAGTCATCTAGTCTGCCACATATCGTCTTTCT
TGCTTTGGACGTCATGTTAGGTGTGGCATCGATCGTCCATCTAACTGTCA
TTAGTTTAGAGAGATTGTTTGCCGTCATCCGCCCTGCCACCCATCGCAAC
TTATCCCGCCAAACGCACTTGGTTCGTATCGCTGTCTTCGCTGTTTGGGG
CTTCGCCATCGTCAATTCTGCGTTATCTTTCGTGAAAACGTACTACGGGT
GGAAGGCGTATAATATTTACATCGTGGTGATTGGCTTTGTGGTCCCCGCC
CTCATTATTGTCTGTTCGTATGTGGCTATCTACCGCGTGGCCCAACAACA
TATCTCCGAACAAAAGAAATTGAAACAAGAAATGCGATTGGCTGGAATGA
TCGCTATTGTTATTATTTTGTTCATAGTTTGTTGGTTCCCATTCTTCCTC
ATTAACATTTTGTACGAATATTGTTACCCTCCAGAATGCAGTCACGTCAT
TATCGAAAAATCGATCCCTTTCGTCAAGTTTTTGCATTACTCCAACTCTA
TGATGAACCCCTTGGTTTACGCGTACCGAAATTCGGACTATAGACAAGCT
TTCAAGAATCTTCTCCTTTCTTTGTTGAAAAGACAAGCATTGAGAAAAAG
ATCAGCTTCGGGTCTATCTTCGGGCACAGGACGCTCAGATCTTGATGACT
TCATGGACTCGGTACAGAATTTGAATCAAATGAGCAAGCATGAATCTGCC
GTGTAAAATCTCTCCAAACAACCTCTCATGAAGTAGAAGGAGGAGGAGAT
GAAAGAGAAAACTTTCTGTTTAAACATTTTTCAAACATTTCAAACTGACT
TCTCCTTTTTTTGTGAAGGTTTAATTTGATTATAAATCTAAGGTGCAATT
TTAAGAAATATAAGAATATCTAACCAAGGCAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008184-exon-sc0000082-1575043694:537148..537261 | TCONS_00008184-exon-sc0000082-1575043694:537148..537261 | Clytia hemisphaerica | exon |
| TCONS_00008184-exon-sc0000082-1575043694:535873..536261 | TCONS_00008184-exon-sc0000082-1575043694:535873..536261 | Clytia hemisphaerica | exon |
| TCONS_00008184-exon-sc0000082-1575043694:534727..535651 | TCONS_00008184-exon-sc0000082-1575043694:534727..535651 | Clytia hemisphaerica | exon |
| TCONS_00008184-exon-sc0000082-1510915933:537148..537261 | TCONS_00008184-exon-sc0000082-1510915933:537148..537261 | Clytia hemisphaerica | exon |
| TCONS_00008184-exon-sc0000082-1510915933:535873..536261 | TCONS_00008184-exon-sc0000082-1510915933:535873..536261 | Clytia hemisphaerica | exon |
| TCONS_00008184-exon-sc0000082-1510915933:534727..535651 | TCONS_00008184-exon-sc0000082-1510915933:534727..535651 | Clytia hemisphaerica | exon |
| TCONS_00008184-exon-sc0000082-1491911889:537148..537261 | TCONS_00008184-exon-sc0000082-1491911889:537148..537261 | Clytia hemisphaerica | exon |
| TCONS_00008184-exon-sc0000082-1491911889:535873..536261 | TCONS_00008184-exon-sc0000082-1491911889:535873..536261 | Clytia hemisphaerica | exon |
| TCONS_00008184-exon-sc0000082-1491911889:534727..535651 | TCONS_00008184-exon-sc0000082-1491911889:534727..535651 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000082 | supercontig | sc0000082:534727..537261 - |
Blast
BLAST of TCONS_00008184 vs. Swiss-Prot (Human)
Match: 5HT4R (5-hydroxytryptamine receptor 4 OS=Homo sapiens GN=HTR4 PE=1 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 5.095e-26 Identity = 95/325 (29.23%), Postives = 152/325 (46.77%), Query Frame = 2
Query: 302 SFVNVVSLLMLGTLVICIIGGNVLVISAFMTNGRKIQTITNYFVVSLAVSDILVGVFSVPF---------WMLVEINHEQSSSLPHIVFLALDVMLGVASIVHLTVISLERLFAV-IRPATHRNLSRQTHLVRIAVFAVWGFAIVNSALSFVKTYYGW----------------------------KAYNIYIVVIGFVVPALIIVCSYVAIYRVAQQHI------------SEQK----------KLKQEMRLAGMIAIVIILFIVCWFPFFLINILYEYCYPPECSHVIIEKSIPFVKFLHYSNSMMNPLVYAYRNSDYRQAF 1096
S VV L L T+++ I GN+LV+ A + + + TNYF+VSLA +D+LV V +PF W+ E+ +V +LDV+L ASI HL ISL+R +A+ +P +RN + T L RIA+ + G ++ + +SF+ GW K Y I V+ F +P L++V +Y IY A++H SE + +++ E + A + I++ F +CW PFF+ NI+ P + + + +L Y NS +NP +YA+ N +R+AF
Sbjct: 16 SVEKVVLLTFLSTVILMAILGNLLVMVAVCWDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGAIELVQDIWIYGEVF--------CLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRN--KMTPL-RIALM-LGGCWVIPTFISFLPIMQGWNNIGIIDLIEKRKFNQNSNSTYCVFMVNKPYAITCSVVAFYIPFLLMVLAYYRIYVTAKEHAHQIQMLQRAGASSESRPQSADQHSTHRMRTETKAAKTLCIIMGCFCLCWAPFFVTNIV-----DPFIDYTVPGQVWTAFLWLGYINSGLNPFLYAFLNKSFRRAF 323
The following BLAST results are available for this feature:
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