TCONS_00008184 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008184
Unique NameTCONS_00008184
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008184 ID=TCONS_00008184|Name=TCONS_00008184|organism=Clytia hemisphaerica|type=transcript|length=1428bp
ataaatattttaaaatgaaaaattttgacaaCGCAGCATTGTTTCAAGCC
ATGTCGGAAGAGATGGCTGATCTGGGAAATATTGTTGTCTTAGAGTCAGT
TATTTGGTCCAAAGCAAAcctgtgatgacgtcattcaataTAGACAATTC
CACGTTGTTGCATAGAAACCAAACCTTCTTCATGAGCAGCCTGCTTCCAC
CATCAGAACCGCCTNCCACGTTGTTGCATAGGAACCAAACCTTCTTCATG
AGCAGCCTGCTTCCACCATCAGAACCGCCTACCGCCCTCAACCATTCATT
ATCCTTCGTCAATGTGGTCAGCCTTTTGATGCTGGGAACGTTGGTGATTT
GCATCATCGGAGGGAACGTTCTTGTCATCAGTGCTTTCATGACCAACGGG
AGGAAGATCCAGACTATCACAAACTATTTTGTCGTCTCACTGGCGGTCTC
TGATATTTTGGTGGGAGTATTCTCCGTACCTTTTTGGATGCTGGTCGAAA
TaaaccACGAACAGTCATCTAGTCTGCCACATATCGTCTTTCTTGCTTTG
GACGTCATGTTAGGTGTGGCATCGATCGTCCATCTAACTGTCATTAGTTT
AGAGAGATTGTTTGCCGTCATCCGCCCTGCCACCCATCGCAACTTATCCC
GCCAAACGCACTTGGTTCGTATCGCTGTCTTCGCTGTTTGGGGCTTCGCC
ATCGTCAATTCTGCGTTATCTTTCGTGAAAACGTACTACGGGTGGAAGGC
GTATAATATTTACATCGTGGTGATTGGCTTTGTGGTCCCCGCCCTCATTA
TTGTCTGTTCGTATGTGGCTATCTACCGCGTGGCCCAACAACATATCTCc
gaacaaaagaaattgaaacaagAAATGCGATTGGCTGGAATGATCgctat
tgttattattttgttcATAGTTTGTTGGTTCCCATTCTTCCTCATTAACA
TTTTGTACGAATATTGTTACCCTCCAGAATGCAGTCACGTCATTATCGAA
AAATCGATCCCTTTCGTCAAGTTTTTGCATTACTCCAACTCTATGATGAA
CCCCTTGGTTTACGCGTACCGAAATTCGGACTATAGACAAGCTTTCAAGA
ATCTTCTCCTTTCTTTGTTGAAAAGACAAGCATTGAGAAAAAGATCAGCT
TCGGGTCTATCTTCGGGCACAGGACGCTCAGATCTTGATGACTTCATGGA
CTCGGTACAGAATTTGAATCAAATGAGCAAGCATGAATCTGCCGTGTAAA
ATCTCTCCAAACAACCTCTCATGAAGTAGAAGGAGGAGGAGATGAAAGAG
AAAACTTTCTgtttaaacatttttcaaacatttcaaaCTGACTTCTCCTT
TTTTTGTGAAGGTTTAATTTGATTATAAATCTAAGGTGCAATTTTAAGAA
ATATAAGAATATCTAACCAAGGCAATTC
Run BLAST on NCBI

transcript from alignment at sc0000082:534727..537261-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008184 ID=TCONS_00008184|Name=TCONS_00008184|organism=Clytia hemisphaerica|type=transcript|length=2535bp|location=Sequence derived from alignment at sc0000082:534727..537261- (Clytia hemisphaerica)
ATAAATATTTTAAAATGAAAAATTTTGACAACGCAGCATTGTTTCAAGCC ATGTCGGAAGAGATGGCTGATCTGGGAAATATTGTTGTCTTAGAGTCAGT TATTTGGTCCAAAGGTATTGTTAATTTTCTCTCATTCCCCGTGAGTATCT ATTTCGCCAATTAGAACGATTTCATTCGTTTTTTTTCTTGTCTGCAACAA ACCCGATATTTGCAGGAACTGCTGAATTAATTTCTATGATCTATAAGTGT TTGCTGTTTTTTGTCAATTTATCATAGTTTAATTTATCGAGCTTTTTTTT TTCTTCTCCTCGAACAGTATTTAAATACTTCGGTTGACAAACAAGCAAAA GAAACGATATTTTCCTGTTCGCCGATAAAAAGCAAAGTATCCGCTCATTA ATTATTGACTTTGAAAAAGTTCAAGCAAGAAAACATTTTTTTGTTATTTT TCATTTTGGATACAAAGTATCAGAGGGGAAAGATTTTCTTCTTATTTCTA CCAATATTGCAGTCGAAGAATCATGAATAATTGAAGGTGCAGCTTTTGTT GTTTTGCCTTTTTCTCCTCAGCTTCATCTCTTATTTTCGCATCTCCTCTT TTCTTTTTCTTCGTCGTTAAAAACATTTTGATGTGATTGGACTTCATCTC AACTTCATGTCGTGAAAAGGTAAACGAGGAAAATGGACAACGTTTTTAAT TTAAAATTCCAAAGTCTGCATTCTAGCTCTTTCAATCAATGTCGAATCTT TGCATTAGCTTGCTTCAGATATGCTCGCATTCATGTTTTCCCCAACATTC AACTCAGTTGTATTAGTTAATATAACCCTCCCCCATTTTGACAGCTTTCA CAACTCATCTTATTTCATTTTGGATATGGAATTTTTTTCAAACCTGGGGA AACTGGGGTCAATTCTCATTGTGATCATTTTTAGGATATCGTAAAAATCA AAATCATAAAATTCAATCGCAACGATTCTAAAATATCACTCCGTTTTCAG CAAACCTGTGATGACGTCATTCAATATAGACAATTCCACGTTGTTGCATA GAAACCAAACCTTCTTCATGAGCAGCCTGCTTCCACCATCAGAACCGCCT NCCACGTTGTTGCATAGGAACCAAACCTTCTTCATGAGCAGCCTGCTTCC ACCATCAGAACCGCCTACCGCCCTCAACCATTCATTATCCTTCGTCAATG TGGTCAGCCTTTTGATGCTGGGAACGTTGGTGATTTGCATCATCGGAGGG AACGTTCTTGTCATCAGTGCTTTCATGACCAACGGGAGGAAGATCCAGAC TATCACAAACTATTTTGTCGTCTCACTGGCGGTCTCTGATATTTTGGTGG GAGTATTCTCCGTACCTTTTTGGATGCTGGTCGAAATAAGTAAGATTTTT TTTATGTGAATGAAAATGAAAGTTCTGTCAAGGATATTTCGAGTGTGAAA GTTTATCAGTGATTTGCGTTTATTGTTTATTTCCAACAATTCAAAATATC CACAAGTACCCATTTACCATTACTCTACCATTATTGCTAGAATTCGCAGC TAAGCATGCTTTGATAATTGAATAAGCAGATCTCGTCATTTTCTTTTTTC TTTTTTTCAGACCACGAACAGTCATCTAGTCTGCCACATATCGTCTTTCT TGCTTTGGACGTCATGTTAGGTGTGGCATCGATCGTCCATCTAACTGTCA TTAGTTTAGAGAGATTGTTTGCCGTCATCCGCCCTGCCACCCATCGCAAC TTATCCCGCCAAACGCACTTGGTTCGTATCGCTGTCTTCGCTGTTTGGGG CTTCGCCATCGTCAATTCTGCGTTATCTTTCGTGAAAACGTACTACGGGT GGAAGGCGTATAATATTTACATCGTGGTGATTGGCTTTGTGGTCCCCGCC CTCATTATTGTCTGTTCGTATGTGGCTATCTACCGCGTGGCCCAACAACA TATCTCCGAACAAAAGAAATTGAAACAAGAAATGCGATTGGCTGGAATGA TCGCTATTGTTATTATTTTGTTCATAGTTTGTTGGTTCCCATTCTTCCTC ATTAACATTTTGTACGAATATTGTTACCCTCCAGAATGCAGTCACGTCAT TATCGAAAAATCGATCCCTTTCGTCAAGTTTTTGCATTACTCCAACTCTA TGATGAACCCCTTGGTTTACGCGTACCGAAATTCGGACTATAGACAAGCT TTCAAGAATCTTCTCCTTTCTTTGTTGAAAAGACAAGCATTGAGAAAAAG ATCAGCTTCGGGTCTATCTTCGGGCACAGGACGCTCAGATCTTGATGACT TCATGGACTCGGTACAGAATTTGAATCAAATGAGCAAGCATGAATCTGCC GTGTAAAATCTCTCCAAACAACCTCTCATGAAGTAGAAGGAGGAGGAGAT GAAAGAGAAAACTTTCTGTTTAAACATTTTTCAAACATTTCAAACTGACT TCTCCTTTTTTTGTGAAGGTTTAATTTGATTATAAATCTAAGGTGCAATT TTAAGAAATATAAGAATATCTAACCAAGGCAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004602XLOC_004602Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008184-exon-sc0000082-1575043694:537148..537261TCONS_00008184-exon-sc0000082-1575043694:537148..537261Clytia hemisphaericaexon
TCONS_00008184-exon-sc0000082-1575043694:535873..536261TCONS_00008184-exon-sc0000082-1575043694:535873..536261Clytia hemisphaericaexon
TCONS_00008184-exon-sc0000082-1575043694:534727..535651TCONS_00008184-exon-sc0000082-1575043694:534727..535651Clytia hemisphaericaexon
TCONS_00008184-exon-sc0000082-1510915933:537148..537261TCONS_00008184-exon-sc0000082-1510915933:537148..537261Clytia hemisphaericaexon
TCONS_00008184-exon-sc0000082-1510915933:535873..536261TCONS_00008184-exon-sc0000082-1510915933:535873..536261Clytia hemisphaericaexon
TCONS_00008184-exon-sc0000082-1510915933:534727..535651TCONS_00008184-exon-sc0000082-1510915933:534727..535651Clytia hemisphaericaexon
TCONS_00008184-exon-sc0000082-1491911889:537148..537261TCONS_00008184-exon-sc0000082-1491911889:537148..537261Clytia hemisphaericaexon
TCONS_00008184-exon-sc0000082-1491911889:535873..536261TCONS_00008184-exon-sc0000082-1491911889:535873..536261Clytia hemisphaericaexon
TCONS_00008184-exon-sc0000082-1491911889:534727..535651TCONS_00008184-exon-sc0000082-1491911889:534727..535651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:534727..537261 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22182 0.585596 0.158869 0.00458335 3.10062 2.04282 3.86772 1.62761 2.23509 3.35832 7.08821 3.0376 0.909738 1.10558 0.356559 1.32653 0.805612 1.99837 0.866269 1.24611 0.951704 0.833426 1.77356 1.5204 2.74643 3.23985 0.263604 0.252411 0.710669 1.18584
Blast
BLAST of TCONS_00008184 vs. Swiss-Prot (Human)
Match: 5HT4R (5-hydroxytryptamine receptor 4 OS=Homo sapiens GN=HTR4 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 5.095e-26
Identity = 95/325 (29.23%), Postives = 152/325 (46.77%), Query Frame = 2
Query:  302 SFVNVVSLLMLGTLVICIIGGNVLVISAFMTNGRKIQTITNYFVVSLAVSDILVGVFSVPF---------WMLVEINHEQSSSLPHIVFLALDVMLGVASIVHLTVISLERLFAV-IRPATHRNLSRQTHLVRIAVFAVWGFAIVNSALSFVKTYYGW----------------------------KAYNIYIVVIGFVVPALIIVCSYVAIYRVAQQHI------------SEQK----------KLKQEMRLAGMIAIVIILFIVCWFPFFLINILYEYCYPPECSHVIIEKSIPFVKFLHYSNSMMNPLVYAYRNSDYRQAF 1096
            S   VV L  L T+++  I GN+LV+ A   + +  +  TNYF+VSLA +D+LV V  +PF         W+  E+          +V  +LDV+L  ASI HL  ISL+R +A+  +P  +RN  + T L RIA+  + G  ++ + +SF+    GW                            K Y I   V+ F +P L++V +Y  IY  A++H             SE +          +++ E + A  + I++  F +CW PFF+ NI+      P   + +  +      +L Y NS +NP +YA+ N  +R+AF
Sbjct:   16 SVEKVVLLTFLSTVILMAILGNLLVMVAVCWDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGAIELVQDIWIYGEVF--------CLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRN--KMTPL-RIALM-LGGCWVIPTFISFLPIMQGWNNIGIIDLIEKRKFNQNSNSTYCVFMVNKPYAITCSVVAFYIPFLLMVLAYYRIYVTAKEHAHQIQMLQRAGASSESRPQSADQHSTHRMRTETKAAKTLCIIMGCFCLCWAPFFVTNIV-----DPFIDYTVPGQVWTAFLWLGYINSGLNPFLYAFLNKSFRRAF 323          
The following BLAST results are available for this feature:
BLAST of TCONS_00008184 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
5HT4R5.095e-2629.235-hydroxytryptamine receptor 4 OS=Homo sapiens GN=... [more]
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