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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008168 ID=TCONS_00008168|Name=TCONS_00008168|organism=Clytia hemisphaerica|type=transcript|length=4252bpRun BLAST on NCBI transcript from alignment at sc0000082:368467..416849- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008168 ID=TCONS_00008168|Name=TCONS_00008168|organism=Clytia hemisphaerica|type=transcript|length=48383bp|location=Sequence derived from alignment at sc0000082:368467..416849- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008168 vs. Swiss-Prot (Human)
Match: ANK1 (Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3) HSP 1 Score: 180.259 bits (456), Expect = 1.465e-48 Identity = 120/344 (34.88%), Postives = 173/344 (50.29%), Query Frame = 2
Query: 1208 LEQKANVNAKDYYGSTPLHFASMRGNVTAARHLLNVKTIDIEAKDRTQMTALHSAASNGSYEVCDLLLQHGADIRCRDEEDMTPLHFASMEGHVDIVELLFDVGEKQGGYTMLAKMIMDQDRDDQTALHLAVENGHCDIVKLCISKGANVNFVKTNMNTPLHIACTSGEEGIVQTLVESEADIEAKNVLQETPLHRAALFNRINIVRYLLDRDAEIDCRDKDKKTPLMNAVRKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEEDCWDVINIIRKIPQSSSLLEEFDKNEN-------TPLHIASTKGHIKAVEVLLSMGSLIDAKNDQNLTPLHLASKYGR 2218
L + A+VN G TPLH AS RGNV R LL+ + IE K + ++T LH AA NG + ++LL HGA I+ + + ++P+H A+ H+D V LL + I D D T LH+A GH + K+ + KGA N N TPLHIAC +++ L+++ A I+A TPLH A+ + IV+ LL R A + + +TPL A R + E K LLQ A + K D+T L+ AA +++ LL E + N N TPLHIA+ +GH++ V LL + + TPLH+A+KYG+
Sbjct: 226 LNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLD-RGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAE----------IDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVK----------LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 548 HSP 2 Score: 33.8834 bits (76), Expect = 1.465e-48 Identity = 25/72 (34.72%), Postives = 35/72 (48.61%), Query Frame = 3
Query: 2208 NTVALVRLLLEESGTHNIVNDEDDASN--TPLHLAALEGHENVLSILLEKGAAVDARNAMLWTPLDCAASRG 2417
N + +V+LLL G+ A N TPLH+AA + V LL+ G + +A + TPL AA G
Sbjct: 580 NNLDIVKLLLPRGGS-----PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG 646 HSP 3 Score: 164.081 bits (414), Expect = 1.874e-40 Identity = 120/374 (32.09%), Postives = 172/374 (45.99%), Query Frame = 2
Query: 1253 TPLHFASMRGNVTAARHLLNVKTIDIEAKDRTQMTALHSAASNGSYEVCDLLLQHGADIRCRDEEDMTPLHFASMEGHVDIVELLFDVGEK----------------QGGYTMLAKMIMD-------QDRDDQTALHLAVENGHCDIVKLCISKGANVNFVKTNMNTPLHIACTSGEEGIVQTLVESEADIEAKNVLQETPLHRAALFNRINIVRYLLDRDAEIDCRDKDKKTPLMNAVRKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEEDCWDVINIIRKIPQSS-----------------------SLLEEFDKNEN-------TPLHIASTKGHIKAVEVLLSMGSLIDAKNDQNLTPLHLASKYG 2215
TPLH A+ G+ A+ LL+ K ++ T LH A V +LLL+ GA I E +TPLH AS GH+ IV+ L G + G+T +AK ++ + +DDQT LH A GH ++VKL + AN N T +TPLHIA G V L+E EA TPLH AA + ++ + LL+RDA + K+ TPL AV +N++ VKLLL RG T L++AA+++ +V + + S+ +LL N N TPLH+ + +GH+ +VL+ G ++DA TPLH+AS YG
Sbjct: 340 TPLHVAAHCGHHRVAKVLLD-KGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG 712 HSP 4 Score: 156.762 bits (395), Expect = 3.567e-38 Identity = 116/346 (33.53%), Postives = 173/346 (50.00%), Query Frame = 2
Query: 1247 GSTPLHFASMRGNVTAARHLLNVKTIDIEAKDRTQMTALHSAASNGSYEVCDLLLQHGADIRCRDEEDMTPLHFASMEGHVDIVELLFDVGEKQGGYTMLAKMIMDQDRDDQTA--------------------LHLAVENGHCDIVKLCISKGANVNFVKTNMNTPLHIACTSGEEGIVQTLVESEADIEAKNVLQETPLHRAALFNRINIVRYLLDRDAEIDCRDKDKKTPLMNAVRKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEEDCWDVINII---RKIPQSSSLLEEFDKNENTPLHIASTKGHIKAVEVLLSMGSLIDAKNDQNLTPLHLASKYG 2215
G+T LH A++ G R L+N ++ A+ + T L+ AA EV LL++GA+ E+ TPL A +GH ++V L + G K G + A I ++ D +TA LH+A + ++ +L +++GA+VNF N TPLHIA G +V+ L++ A IE K + TPLH AA + I LLD A I + K+ +P+ A + D+++ V+LLLQ A+I T L+VAA V ++ P S +L N TPLHIA K H++ +E+LL G+ IDA + LTPLH+AS G
Sbjct: 78 GNTALHIAALAGQDEVVRELVNYGA-NVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTK-GKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRAL------NGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFMG 415 HSP 5 Score: 132.109 bits (331), Expect = 1.106e-30 Identity = 102/359 (28.41%), Postives = 172/359 (47.91%), Query Frame = 2
Query: 1208 LEQKANVNAKDYYGSTPLHFASMRGNVTAARHLLNVKTIDIEAKDRTQMTALHSAASNGSYEVCDLLLQHGADIRCRDEEDMTPLHFASMEGHVDIVELLFDVGEKQG-----GYTML-----------AKMIMDQD-------RDDQTALHLAVENGHCDIVKLCISKGANVNFVKTNMNTPLHIACTSGEEGIVQTLVESEADIEAKNVLQETPLHRAALFNRINIVRYLLDRDAEIDCRDKDKKTPLMNAVRKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEEDCWDVINIIRKIPQSSSLLEEFDKNENTPLHIASTKGHIKAVEVLLSMGSLIDAKNDQNLTPLHLASKYG 2215
L++ A+ N + TPLH A+ G+ A++LL K + AK + T LH AA G + LLL++ A+ TPLH A+ EGHV+ V L + Q G+T L A++++++D ++ T LH+AV + + DIVKL + +G + + N TPLHIA + + ++L++ A++V TPLH AA +V LL + A + +K TPL ++ +V +L++ G + T L+VA+ + I +++ + Q + + K +PLH A+ +GH V +LL G+ + + TPL +A + G
Sbjct: 424 LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA-KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASH---YGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 778 HSP 6 Score: 122.479 bits (306), Expect = 2.914e-29 Identity = 91/314 (28.98%), Postives = 142/314 (45.22%), Query Frame = 2
Query: 1208 LEQKANVNAKDYYGSTPLHFASMRGNVTAARHLLNVKTIDIEAKDRTQMTALHSAASNGSYEVCDLLLQHGADIRCRDEEDMTPLHFASMEGHVDIVELLFDVG-----EKQGGYTML-----------AKMIMD-------QDRDDQTALHLAVENGHCDIVKLCISKGANVNFVKTNMNTPLHIACTSGEEGIVQTLVESEADIEAKNVLQETPLHRAALFNRINIVRYLLDRDAEIDCRDKDKKTPLMNAVRKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEEDCWDVINIIRKIPQSSSLLEEFDKN 2080
LE AN N G TPLH A+ G+V LL K + T LH AA G V +LLL+ A + +TPLH A ++DIV+LL G GYT L A+ ++ + T LHLA + GH ++V L +SK AN N + TPLH+ G + L++ ++A + TPLH A+ + I +V++LL A+++ + K +PL A ++ + + V LLL+ GA + T L +A V ++++ + +S + DK+
Sbjct: 490 LENNANPNLATTAGHTPLHIAAREGHVETVLALLE-KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKH 802 HSP 7 Score: 26.9498 bits (58), Expect = 2.914e-29 Identity = 14/30 (46.67%), Postives = 16/30 (53.33%), Query Frame = 3
Query: 1113 ARLKEESILIYLLEQKANVNAKDYYGSTPL 1202
AR + YLL+ KA VNAK TPL
Sbjct: 445 ARAGHTEVAKYLLQNKAKVNAKAKDDQTPL 474 HSP 8 Score: 116.701 bits (291), Expect = 5.457e-26 Identity = 88/308 (28.57%), Postives = 143/308 (46.43%), Query Frame = 2
Query: 1355 TALHSAASNGSYEVCDLLLQHGADIRCRDEEDMTPLHFASMEGHVDIV------ELLFDVGEKQGGYTMLAKMIMDQD-----------------RDDQTALHLAVENGHCDIVKLCISKGANVNFVKTNMNTPLHIACTSGEEGIVQTLVESEADIEAKNVLQETPLHRAALFNRINIVRYLLDRDAEIDCRDKDKKTPLMNAVRKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEEDCWDVINIIRKIPQSSSLLEEFDKNENTPLHIASTKGHIKAVEVLLSMGSLIDAKNDQNLTPLHLASK 2209
T+ AA +G+ + L++G DI ++ + LH AS EGHV +V E++ + K+G + + QD + T L++A + H ++VK + GAN N + TPL +A G E +V L+ + K ++ LH AA + LL D D K TPL A +N+ +LLL RGA + T L++A+ +VI ++R + + +E K+E TPLH A+ GH++ E+LL G+ I AK L+P+H+A++
Sbjct: 14 TSFLRAARSGNLDKALDHLRNGVDINTCNQNGLNGLHLASKEGHVKMVVELLHKEIILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLI----NYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRG--NVI-MVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQ 314 HSP 9 Score: 93.5893 bits (231), Expect = 6.184e-19 Identity = 69/239 (28.87%), Postives = 113/239 (47.28%), Query Frame = 2
Query: 1586 ALHLAVENGHCDIVKLCISKGANVNFVKTNMNTPLHIACTSGEEGIVQTLVESEADIEAKNVLQETPLHRAALFNRINIVRYLLDRDAEIDCRDKDKKTPLMNAV-----------------------------RKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEEDCWDVINIIRKIPQSSSLLEEFDKNENTPLHIASTKGHIKAVEVLLSMGSLIDAKNDQNLTPLHLASKYG 2215
LHLA + GH +V + K + NT LHIA +G++ +V+ LV A++ A++ TPL+ AA N + +V++LL+ A + +D TPL A+ R D+ T +LLQ + V T L++AA ++ +N+ + + + + +N TPLHIAS +G++ V +LL G+ I+ K LTPLH A++ G
Sbjct: 48 GLHLASKEGHVKMVVELLHKEIILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAH---YENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNG 283 The following BLAST results are available for this feature:
BLAST of TCONS_00008168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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