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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008162 ID=TCONS_00008162|Name=TCONS_00008162|organism=Clytia hemisphaerica|type=transcript|length=2772bp
actaattcgcgagtttccgttgttttttttggaatctaaaatatgtatca
cgaaatgaaacgtttttcgacctcagccgcgcgactatatgatgaaacct
gacagaaggttttcaaccagatttattcagataaagcgataagaggttca
ttacttgtggattttaaaacctacataagcaaaaacgtaagttgctggga
aggaaagagtaaacacaagacagaaggtttggttgtgttgatcaggtatg
tttttattctatcggAACTAATATTATAAAAGACCAAGGAGGCCCTGACT
GGTTCagggagctcgaaacaagcactcttttgtgattttctcttttacTA
TGGTCACAttgtctggtctgtagttttaCATACAATGCATGGCTTATCCA
TTTCCATACAGGGATATTGACAAGGGTggtctgagccttgattttccaag
gggtttaTTATTAAAGGTATCCATGGAGTTCTTTCCTCGTAAACTGACAT
CAATAGTCATTTTCcaggccctttttcacaaaattttagcttccaGGGGT
GTCAACCCCTAATTTCCAAGGGATAGTAtttgttatccaaaatttccagg
gggtgtagtgaaaaaagttcgtcaatacccctgtgtaattttttttggaa
tagcccaataatcGTTTGGGAGAAGACTGTGGCgctcttttgaataacta
atttcAGACgtcagtttgaacaaaaattgcgatcaaaccaatcgaatgta
atcgaatgtaatcgaatGCGATCAAATAATTGCTATTTGATTATTTAATT
GTCAAACGtgatcgaatctcaatcgaacggccgattcccgAGTAATTAAT
ATACGATTTTGTTCAATTGCGTTTGAATAAGAAtcgattggttcaattga
tTGTCAAATATATGTTTGATTGATCTTCGATCATGTTTGATTATCACAAT
TATGATTAGgttcaataaatttgattgcaataaaattgacccactccttt
agagctttggCGTGGGATAAGAACGAGTTTATAAATACTATACAAGAGAG
AATATATCAATTGAATGTAATCAAACAGTAATTGAGTACAATCTAAAGTA
ATCAAAGCAATTGAACAGAAAATCCTGGGTAGTTATTTGCTTAcaattcg
attgtgttcaattgattcagTGCTCGATTCCtcaattgacaccgtctggc
taaTTTCAGTACTATATAAATAGTCGTCAGAAACTGTCTGATGGCATGAA
TCTGTGGCACAGTGGATAGAGTGTTGAATTCCTGATCAACAGATCTTTGC
ATTTAACTTAAGGGGTTCGAATCCCTTTGGTTGTGATCTTTCGGGAAATC
ATTAAACTGTTCAAAATGTAGATGATAACTCACAAAGTCCCAACAAATTA
GAAAACCTACGAACTAGAGGCTGAAAGGTACGAAATAGTTCAAATGTAAC
CTTCATTAATTCTAACTCTTCAAAACACTATACTAAGGCTTAGTGAGCCA
AGAACTTCTGCCACTCCCTTTGAGCTTTATCATTCTGACACTGATATTCA
CAACCTTGATACTtatgaactaaaatctttagctacaaaattctatttaa
aCAAATACAAAGCTAAAGGTGTGTGCGTGCGTGCTAGAGTTTTTGATTAT
CGGCAGAATGACATTGCGTCTAGTGAAGGGTCTCACAAGTTTGATAGACC
CCaaaattgatgaaattgataaaattttgtCTGCAATTTCAGAACATTAA
ACTGCACATTTGGGCCTGAAAATAATCTTAAGCTTCAGATTTGATCAGGT
CTGCCAAATTTTTCCATTACTAGGATGTTTAAGAAAACTCATTAGGATTA
CTCCTTTTCCAGAGTCAAAAATTTCAACTATCTGACAGGTCAATAgttat
aactttttaaaaagttttgaacagCTTAGCCTTTATAAGCCTACGACTGc
actctttcgatagctatctacccaaaggtaggggagggtgccactctttc
tccctggattgctccacttacccttgatccttctcttaattgctgagcat
caagcagagaggcaccgttttaggaatctttggtatggCCAGACtgaggg
ttgaacccacaatcGCACCATAGCCGGATGccctaccactgcactacggt
cgctttgTATTATGACGTTTTTTTGGATGATAGATCAAGTGATTTTTATT
GCAATTCAAATCAAGAAAGAATGTATTCCATGATAACGGTGAGTTGTCTT
AACACCTGTTTACACTTTCATTTCACTATTTATGTTTTAGGGTACTCGAT
CAACTACAGGTTTacgttcttctttttttcaggtATATATTGACTTTGGT
ATAGTCAACACAATCACCAAAACAAATCAATGAAAGAATATATGGAAAGT
ACTCAATGCAATTAAAAGGTTTCAACGATGTCAGCTTCCATGGTTGTCCA
CAGATACCAACACCCAATCTCGACCTCCTGGCAAACAAAGGAATCATACT
CAATAATTACTACGTTCTCCCAAACTGTTCACCCACCCGTAGTGCTTTGC
TGACCGGACGGTACCCTATCAATACCGGTATGTGTTCAGTTtgcatttta
acttttattttcaaatgaatACTTTCtaattcattttgaaaatgttgctt
TCGTTCTTTGTCAGGACCTGGATCTCATACGATGCCAGTGAAGTGGCACT
GAATGGGTTTAGAAGAAGATTTATTTTAACACACAAGTGTTGTATACAAA
ACGCATAAATTTTGAGTGGAAA Run BLAST on NCBI transcript from alignment at sc0000082:280983..288245- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008162 ID=TCONS_00008162|Name=TCONS_00008162|organism=Clytia hemisphaerica|type=transcript|length=7263bp|location=Sequence derived from alignment at sc0000082:280983..288245- (Clytia hemisphaerica)
ACTAATTCGCGAGTTTCCGTTGTTTTTTTTGGAATCTAAAATATGTATCA
CGAAATGAAACGTTTTTCGACCTCAGCCGCGCGACTATATGATGAAACCT
GACAGAAGGTTTTCAACCAGATTTATTCAGATAAAGCGATAAGAGGTTCA
TTACTTGTGGATTTTAAAACCTACATAAGCAAAAACGTAAGTTGCTGGGA
AGGAAAGAGTAAACACAAGACAGAAGGTTTGGTTGTGTTGATCAGGTATG
TTTTTATTCTATCGGAACTAATATTATAAAAGACCAAGGAGGCCCTGACT
GGTTCAGGGAGCTCGAAACAAGCACTCTTTTGTGATTTTCTCTTTTACTA
TGGTCACATTGTCTGGTCTGTAGTTTTACATACAATGCATGGCTTATCCA
TTTCCATACAGGGATATTGACAAGGGTGGTCTGAGCCTTGATTTTCCAAG
GGGTTTATTATTAAAGGTATCCATGGAGTTCTTTCCTCGTAAACTGACAT
CAATAGTCATTTTCCAGGCCCTTTTTCACAAAATTTTAGCTTCCAGGGGT
GTCAACCCCTAATTTCCAAGGGATAGTATTTGTTATCCAAAATTTCCAGG
GGGTGTAGTGAAAAAAGTTCGTCAATACCCCTGTGTAATTTTTTTTGGAA
TAGCCCAATAATCGTTTGGGAGAAGACTGTGGCGCTCTTTTGAATAACTA
ATTTCAGACGTCAGTTTGAACAAAAATTGCGATCAAACCAATCGAATGTA
ATCGAATGTAATCGAATGCGATCAAATAATTGCTATTTGATTATTTAATT
GTCAAACGTGATCGAATCTCAATCGAACGGCCGATTCCCGAGTAATTAAT
ATACGATTTTGTTCAATTGCGTTTGAATAAGAATCGATTGGTTCAATTGA
TTGTCAAATATATGTTTGATTGATCTTCGATCATGTTTGATTATCACAAT
TATGATTAGGTTCAATAAATTTGATTGCAATAAAATTGACCCACTCCTTT
AGAGCTTTGGCGTGGGATAAGAACGAGTTTATAAATACTATACAAGAGAG
AATATATCAATTGAATGTAATCAAACAGTAATTGAGTACAATCTAAAGTA
ATCAAAGCAATTGAACAGAAAATCCTGGGTAGTTATTTGCTTACAATTCG
ATTGTGTTCAATTGATTCAGTGCTCGATTCCTCAATTGACACCGTCTGGC
TAATTTCAGTACTATATAAATAGTCGTCAGAAACTGTCTGATGGCATGAA
TCTGTGGCACAGTGGATAGAGTGTTGAATTCCTGATCAACAGATCTTTGC
ATTTAACTTAAGGGGTTCGAATCCCTTTGGTTGTGATCTTTCGGGAAATC
ATTAAACTGTTCAAAATGTAGATGATAACTCACAAAGTCCCAACAAATTA
GAAAACCTACGAACTAGAGGCTGAAAGGTACGAAATAGTTCAAATGTAAC
CTTCATTAATTCTAACTCTTCAAAACACTATACTAAGGCTTAGTGAGCCA
AGAACTTCTGCCACTCCCTTTGAGCTTTATCATTCTGACACTGATATTCA
CAACCTTGATACTTATGAACTAAAATCTTTAGCTACAAAATTCTATTTAA
ACAAATACAAAGCTAAAGGTGTGTGCGTGCGTGCTAGAGTTTTTGATTAT
CGGCAGAATGACATTGCGTCTAGTGAAGGGTCTCACAAGTTTGATAGACC
CCAAAATTGATGAAATTGATAAAATTTTGTCTGCAATTTCAGAACATTAA
ACTGCACATTTGGGCCTGAAAATAATCTTAAGCTTCAGATTTGATCAGGT
CTGCCAAATTTTTCCATTACTAGGATGTTTAAGAAAACTCATTAGGATTA
CTCCTTTTCCAGAGTCAAAAATTTCAACTATCTGACAGGTCAATAGTTAT
AACTTTTTAAAAAGTTTTGAACAGCTTAGCCTTTATAAGCCTACGACTGC
ACTCTTTCGATAGCTATCTACCCAAAGGTAGGGGAGGGTGCCACTCTTTC
TCCCTGGATTGCTCCACTTACCCTTGATCCTTCTCTTAATTGCTGAGCAT
CAAGCAGAGAGGCACCGTTTTAGGAATCTTTGGTATGGCCAGACTGAGGG
TTGAACCCACAATCGCACCATAGCCGGATGCCCTACCACTGCACTACGGT
CGCTTTGTATTATGACGTTTTTTTGGATGATAGATCAAGTGATTTTTATT
GCAATTCAAATCAAGAAAGAATGTATTCCATGATAACGGTGAGTTGTCTT
AACACCTGTTTACACTTTCATTTCACTATTTATGTTTTAGGGTACTCGAT
CAACTACAGGTTTACGTTCTTCTTTTTTTCAGGTATATATTGACTTTGGT
ATAGTCAACACAATCACCAAAACAAATCAATGAAAGAATATATGGAAAGT
ACTCAATGCAATTAAAAGTGAGTTTAATTAAAAAAAGTTAGTCTTTTTTT
AAATTTATTGTTTATAATTAGATCAATGTTACTTGTTAATGAAATGTTGG
TAAGGATGTGTATTATATGTGTAGTGATAGGGTAACTTACGTGAAATGGA
AACATAGGGAGATTTCTAACCTCATCCCTCCCAGGTAGGTTTGCAGTAGG
TTTTCACTAAAAAACCTTCTAGTCTTATCATTTTTTTGAGATTTGATATT
ACTCTCAAGATACTCTTTTTACTTTCGAGCCATCATATTGATATTACATT
TACTTTCACGTTTGTTGTCTCTATTACCTTTTCGATGCATCGACTGTCAT
CACAGTCATAATAACCCATTGTGGCAACTGTTACACAAGAACAATTATCT
TGAAAGTCCAAACTTTGAAAATTTGACCTTTTCTGCATCATTAGACAATG
GCATTTTGATTTTTTTGTTATGTTTCAGTGTGTTTAATTCGGTTTTTGAA
CATCTCCCCAGTAAACATATTTTATAAGCTACAGACAGATTTTTTTAGAT
TATTTAAAAATACGCATATAAATTTGACATTTTCAGATCATGTTTCCGTT
GAGATAGCTTGAAAAGTGATAAGTCAATCTAAACATGAACTATTGTTGTT
GTTTTTGTTGGCCTGTCTGAAAGTGACGTCAGAATCATGTAACATTTCAA
TTGCTTGTTACTTCCTTCCACTGAGATATGAAAATGAATTTTGAGAACTC
AATGGAAATTCATTTGAAATTAAAATTCGTTAGAGATTTTAAATGCAGAA
CGGTCTGGAGGAAAGTGATTCGGTGCTGGCGATTTTTAGTTTTGTAGTTT
TGGCCGATCGTGATATTTTGACTTGACACCAAAGTTTTGGATGAATCAGA
AGAGCTTATCGTTCTACATCTGCAATTTGAGCTTTACTAATCATAAGAGT
TGTTGCTGGTGATGAGATATACCTGTCAATCTTGTTCTCGCCTTATCTGT
TGATGGTTATTAGAAAGAAATATTCATATATCAAGTCAAGCAAGTTATAC
AAGACTGTCGAACTTAGTGTTTTAAGAGTACAACATCTCCGAAGGTAAAA
AGATAGCTCTAAATTTCCTATTTAGTGTCTTGAAGAAAAATCAGAGTGTT
AGAGGTTTATTAAAAAATGTTGCGATTGATAAACGATGTGTAAAGTTGTT
GTTTACTTTAAGATTGAATATGACCTTTTTATTTACAAATTGATAAATTG
GTCATGAAAGGAGTGAAAAGGGAGAGAGAAGATAAGTAAACGATTACACA
AAAGTATTAACTTGTCAACATGAGCTTTCAACGGCCGCTGGAATGTCAAC
ATTGGAGATCTCGTCATCACCATTGGAGTAGTAAAAGATAAGACCATCAG
ATTTAGTTGTTCGCACATGGTGGTCTTGCAAAGTCACATGTTTCGTCTTT
TTTTGATCAAAATGAACCGGTGTAAACCTAAGTTTGCTTACATTTTGTTA
TGGATCATAGCGTGAGGAGCTCTATCAGCGTAGAAGTTGTTGCTTAATCT
TGCGAGGATTACACCTGAAGTTGGAACACTACACTACTGAACACCACTGA
ACACCACGACCAGATGGAGAAAACCTATTTGAATGGTGTTCTACATTTGA
AGAGCTTTTCGGTTTGTTATGAAAAGTAAATTACGTGGTAGGGGCAAGTT
GCGAAGCAAGAAGATTAGTTGTTTATAGATAAAAGATATTATATATGTCA
CGTGATTCAACACCCGATGACCTTCGTTTGTTATCCATATAATGAGTCAG
GACCAAAAGTATTGCCTTGTTTTTCTAACTTAGTTCCTTAATACAAAAGA
TTTAAAGTTTGATCATGTTTGTTTTGAAATGACATATCTTATTTGTACGG
TCTACTTTAATATCAGTCTTGCTTCCTTACACATCGGAAATCTCTGAAAA
GGTCTTATATCATCATCGTTGATGTGTTGTAGAGGTCAAAGTTTTGTCAT
TTTTTACTTGTTTCGGAATTCAAAGTAAAAAGAATGAAATAAAGTAAAAT
TCAACTTGTCGTCAAACTGTATTTAATAGAATAATTATACCATCATTGCA
ATACTTTGTGTATTGTTTTAAAAGGCTTTGGTATGCTGATATCTTCCTTG
TGTTATGGAAGTCTGAAATCATTTTTGTTGAAGCGTTTTTGAGATTGTTT
TGTCCAGTATGATATCAGGAAAGAACTGAACTGATTACTTTGAGTAGACA
TGTCAGTTTGATGCATAGCCTCCAGAATTTGTTATCAGTTTTGAAAGTAA
TCTTTGACCAAGTTCCTCCCTATTTCACCATTGTGTATTTAGACAATGGA
AGTTATATAATGTTCGTTCATCAAGTGATTTACCTCAGCTCATGCTTCAG
TAAGGTAGCTTGTATCAGAGAAGTTTAAAATGTTGAAAACATAGTTCTCT
GCTAAGAAATTAAGGTAATGAACCTGTGAGATAATTTTGATCGATTCACT
GAATCCTCAACTTCTATCAGTAGAAATCTGAATCATAAAATATTGAAAAA
AAATCAATGATGAAGTACCACTTTGCAGTTTGTTTGTTTTTGTTTATGGT
GAATTGCATCATGGGTAGTAAACACCCAAACATTATTATGATTGTGGCTG
ATGATCTTGTGAGTGTTCTCTTCTGATCTTGCTTTGTTAAGAAATTTACC
CAATAGAGGCTGCATAGTGTCCTCCCCCCCCCCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NATTTTCCCCCCCCCCCCCCTTTATAAAGGGGGGGGGGGATTCTGATTTT
GGCCCTATTTTTAAAGTATGGGGGAAAATGAAAAATTTGAAATTTGCTTG
GGGAAAATAAAGAGGGGGGAAAACCATAAATTTAGGAAATTTTGACTGGG
GGAACTTCACTGATCTCAAGGTTATCTTATTGCAAAACCCGTTTAAGCAA
TAAAATCAACCAACCTTTTTAAATAAACCAACTTTTCAATACAATTTCAT
TTTCCCAGCACTTTCAAGGCTATATTTTCAAGCTTTCCCAAAATTTCAAA
TTTGATTTAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGAAAAATTTTG
AAATATGGTGGGGGAAAGAAAAGAGGGGGGAATGGAGAAAAAATTGGATT
TTTAGTGGGGGGAACCAACCCAGGAGGACACTATGGGCTGAAATACTCCG
GGTGGGAAATTTCTCAAATGGAGGCCAGGATGTTAAAGGGATAACCAAGC
TATTTTTCTTGTTTATATATATGTTGTAGAACGATAGTGTATGCGAGCTT
TCAGAATTGTACCCTCTCTGTGACACATCTGAAAATGAAAATAACTGGAA
GCGGTTGAAATAGGGATGTTCTGGAGGATCCAAAACTTAATAAAGTGATA
TGTTCTTGAAGCCATAACTTCGTCTTTGTAGTTTATTTATAAAAGCTTGT
AATCTGATGGACGGTAAATCCTTTAAGCTATCTTAAGCCTCTAATGACGT
TTATATTATGTGGAATTAAGACCACTTAAACCATTTTAAGTTCCAATAAC
ATTTGGAAAACATGGAGCTAAAACAAATATAAATCTAATCTGGTGTTTTA
GTGTGAATCTCGTTTAATCGTATAGACCACCCATTTGACAAACGTACATG
ACATTTCGCTACAAAAAGTATATTTTTAAATGCTTCCATTTAAAAGTAAT
ACGAATACGATAAATTGAAAACAATTGCAATATGACCTTAGAAAGGATAA
ACAAATTTAAAGACCTCAAATGTTTATAAATTTCAATGAGATTGCGCAAT
CAAATGTTATCGTGTTCTCTGTTTCCCTCTAATACGGAAACTCAACTTGA
GTCAATGTTAGTACTAAGAACCCAATTAAGTTTGGAACGTAGCGTGCTTC
CAATAACCGAATCTTACTAACAACAATGTTTGGAATATCAAACAGTTAGC
TGCACTGGTGATGGATAACATTGCCAACATAACGCATTTCTATTACTTTT
GATTTATCTCGGTTCATTCTTTTTTCAATATTCGATCATGTTCGATCTTT
CTTTCCAGGGTTTCAACGATGTCAGCTTCCATGGTTGTCCACAGATACCA
ACACCCAATCTCGACCTCCTGGCAAACAAAGGAATCATACTCAATAATTA
CTACGTTCTCCCAAACTGTTCACCCACCCGTAGTGCTTTGCTGACCGGAC
GGTACCCTATCAATACCGGTATGTGTTCAGTTTGCATTTTAACTTTTATT
TTCAAATGAATACTTTCTAATTCATTTTGAAAATGTTGCTTTCGTTCTTT
GTCAGGACCTGGATCTCATACGATGCCAGTGAAGTGGCACTGAATGGGTT
TAGAAGAAGATTTATTTTAACACACAAGTGTTGTATACAAAACGCATAAA
TTTTGAGTGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008162-exon-sc0000082-1575043694:285829..288245 | TCONS_00008162-exon-sc0000082-1575043694:285829..288245 | Clytia hemisphaerica | exon |
| TCONS_00008162-exon-sc0000082-1575043694:280983..281337 | TCONS_00008162-exon-sc0000082-1575043694:280983..281337 | Clytia hemisphaerica | exon |
| TCONS_00008162-exon-sc0000082-1510915933:285829..288245 | TCONS_00008162-exon-sc0000082-1510915933:285829..288245 | Clytia hemisphaerica | exon |
| TCONS_00008162-exon-sc0000082-1510915933:280983..281337 | TCONS_00008162-exon-sc0000082-1510915933:280983..281337 | Clytia hemisphaerica | exon |
| TCONS_00008162-exon-sc0000082-1491911889:285829..288245 | TCONS_00008162-exon-sc0000082-1491911889:285829..288245 | Clytia hemisphaerica | exon |
| TCONS_00008162-exon-sc0000082-1491911889:280983..281337 | TCONS_00008162-exon-sc0000082-1491911889:280983..281337 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000082 | supercontig | sc0000082:280983..288245 - |
Blast
The following BLAST results are available for this feature:
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