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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008108 ID=TCONS_00008108|Name=TCONS_00008108|organism=Clytia hemisphaerica|type=transcript|length=2045bpRun BLAST on NCBI transcript from alignment at sc0000082:258526..264909+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008108 ID=TCONS_00008108|Name=TCONS_00008108|organism=Clytia hemisphaerica|type=transcript|length=6384bp|location=Sequence derived from alignment at sc0000082:258526..264909+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008108 vs. Swiss-Prot (Human)
Match: CMS1 (Protein CMSS1 OS=Homo sapiens GN=CMSS1 PE=1 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 4.671e-34 Identity = 69/164 (42.07%), Postives = 105/164 (64.02%), Query Frame = 3
Query: 381 DEWFLKPDVEHENISSYLKEVIEDWQSDMDSHTKLKIKSSPAMLIISSGGQRAVDLLRETKAFRGEQCKCTKLFAKHFKVSEQVKYLKSNIVHLGVGTPNRILKLIEEDGLDLSNVKYIIIDWSWRDVKTRQITTMPGVNEDLRTLFEKYLFERCRMKSLQVSI 872
D FLK + ++SSYLKE+ W +H++ K S MLII S RA++L+R AFRG+ K KLFAKH KV QVK L+ +VHLGVGTP RI +L+++ GL+LS +K+++ DW+WRD K R++ +P + +++ L E + C+ +SL++ +
Sbjct: 119 DSCFLKANDLTHSLSSYLKEICPKWVKLRKNHSE---KKSVLMLIICSSAVRALELIRSMTAFRGDG-KVIKLFAKHIKVQAQVKLLEKRVVHLGVGTPGRIKELVKQGGLNLSPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELLEMGVLSLCKSESLKLGL 278 The following BLAST results are available for this feature:
BLAST of TCONS_00008108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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