TCONS_00008107 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008107
Unique NameTCONS_00008107
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008107 ID=TCONS_00008107|Name=TCONS_00008107|organism=Clytia hemisphaerica|type=transcript|length=1570bp
CatagaaatattgaaaaaacaaatagaaataaGAGTCCATAATGGCGGAT
GCATTGAACGATGATTGGTTCGTTCAAGAAGACATTGTAGATGATGGAGA
TGTCAGTGATGGGCCTGGGGACCAATCAGATGACATCACTAAAAACGAGA
AGCCTACgaaacaaaagaagaagaaaggcGATCGAAAGCGAAAAATGAAG
GATGGTGAAGAAACttcaaaagttgaaaagaagaagaaaaagaagcgGAA
GAAGAAACCCGCTAAACCTAAAGATGGAACGGAACTACCTTCAACTGCGC
AAGCTCTTTGGAACTATTTCGAAGAGGAACTTAAGAAGACTTTATCCGAA
TTGGAACTGTCCGAGATTCGACCCGAACACGATGAATGGTTTCTCAAGCc
agatgtagaacatgaaaatatttccaGCTATCTGAAAGAAGTAATCGAGG
ATTGGCAATCTGACATGGACAGCCATaccaaattaaaaatcaaatcttCT
CCTGCCATGTTGATCATATCTTCGGGTGGACAAAGAGCTGTTGATCTTCT
ACGGGAGACGAAAGCTTTTCGTGGGGAGCAATGCAAATGCACGAAATTAT
TTGCCAAACATTTCAAGGTATCAGAGCAAGTGAAGTACTTGAAAAGTAAC
ATTGTACATCTCGGAGTTGGAACACCGAATCGAATATTGAAACTCATCGA
AGAAGACGGTCTGGATCTAtctaatgtcaaatatatcataATCGATTGGA
GCTGGAGGGATGTGAAAACTCGACAAATAACTACAATGCCTGGAGTGAAT
GAAGACTTGCGCACTctgtttgaaaaatatctttttgaaAGATGTAGAAT
GAAATCTCTACAAATCTGGACAGCACAGTATATGCAGATGATAAAGGAGA
TCAACATTTCTACTGGTGCCCCATAAGCCATTAGGAGCTCTGTCTCTGGT
TGAGCAACCATAACGCCCACTGCCACGCCCATACACCACATATTGATACA
TAAAAGCAATGCCCGTTTCTTTGTGACGTAATTTTCATAATGGAACGGTT
TCGTGATCCGTAACATgcgatcaaaacaaacacaaaacgcGTTTCCAATG
GATACTGAACACGTGAAAAATGCAATAGCGAATTTATAATGATGTATCTG
ACAAGTGTGGTATGACCAGTCTATCAACACCAAACTGTACAAAGGCTGCA
CAACAAGCCCAACCAAGAAATCAGATAAAGCTAACGAGAGAATGAAATAA
ATAGAGGTCTGTGAACgaagttgttttgatttgaggatAGCCACAATGAT
GAGTGCATTTCCAAATATGGCAATTACTGTGAAAACAATGTTGAGGAGGT
TAAGTACGAGTTGGCCAGGTATCTTTGGGATGTACTCTTCAGCTTCGCAA
AGAGTCTTCATTGTAACCCTTGTCTTGCTTTTGTCTTTACCAGTCCAGGA
TTTGTTGTTTTGGCACAATAACACCAATAATGAATAACAGATTTCGACGT
TACAATAGGTATTTCCTAGTGACCGTTcagttttgtcagaaaaactGAGC
ACTCAAGTTAACCGTTCCAT
Run BLAST on NCBI

transcript from alignment at sc0000082:258526..264909+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008107 ID=TCONS_00008107|Name=TCONS_00008107|organism=Clytia hemisphaerica|type=transcript|length=6384bp|location=Sequence derived from alignment at sc0000082:258526..264909+ (Clytia hemisphaerica)
CatagaaatattgaaaaaacaaatagaaataaGAGTCCATAATGGCGGAT
GCATTGAACGATGATTGGTTCGTTCAAGAAGACATTGTAGATGATGGAGA
TGTCAGTGATGGGCCTGGGGACCAATCAGATGACATCACTAAAAACGGTG
AGAGAAAAAACAGACTCTTTTAATGTTAcggtctttttcattttcacaaa
gatttttacttagtaccttttttttaaaataaggaGCTTGTTTTTCGGGT
TGGAACTAAAGACTAGATATTATTGTTAATTTTGCAATGTGCGACAGAAA
GATGCTTATAAAGCTTTCTTTGATCAATCGGACTCACAACTCATAATTAA
GATGGCGCAACGCCGCTAATAGTGCCCTGACTCGCTCCAAGAGAGAGTTC
GAAAAAAAGATCAGcgaacaatcaaaaacaaatccaaaaagatTCTGGAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGAGAAAATGTTTGAGTATGATTGAAAttgtcactattgtt
gcatatcTGTTTGAAGTTAAcctttgtaataaaccaaaccaatgtatgag
cgatttatagagtcccatgtgcttgcacggtggcctggaaatctgtaaaa
cattattattattattattattattattatttttttgactgattagTTAT
TATGGAAATGGTTGGGTTACTGTAGTTCAATCAAATGTGAAATTAAAATT
AGATACAAATTCATACAAACGTTAATTTACACAATTTGATAAAACATAAC
CTGAAACTTAATAAATTTATTTCCAGAGAAGCCTACgaaacaaaagaaga
agaaaggcGATCGAAAGCGAAAAATGAAGGATGGTGAAGAAACttcaaaa
gttgaaaagaagaagaaaaagaagcgGAAGAAGAAACCCGCTAAACCTAA
AGTAAGTTTCGATTCATGAGATACCTTAAAAGGGGAATTTGGGTAATCAT
TGTGACTAATCTGTTAAAATTCCttggtaaatgaaaaaaattcggcACGA
AGTGGGTGTTAAACGCGAAAAAAAATCCTGCAAAATACGCTTTCTTCACA
CCCGCTAACGTGAGCTAGTCCTCctacgcaaaaaaaaaaatcaatattgt
tGAACGATTGACACCTTTTTTGCTTATtaggatgtttttattcaaatggT
TGATTGCTATACATGATTATCCACTTATTCCTTTACTCACTCCAGGATGG
AACGGAACTACCTTCAACTGCGCAAGCTCTTTGGAACTATTTCGAAGAGG
AACTTAAGAAGACTTTATCCGAATTGGAACTGTCCGAGATTCGACCCGAA
CACGGtatcatttttagtttctttctatagaagatcatcattttttaaac
attctcCATTTTTCTTCGCAGTTTTCCTCTTAAATAAAGACCATTTAAAA
ACATTCTCCATAATGGGAAAATAAGGGTAGTAAATGAAGGGAAATGGTCA
AGTCAATCTGCGATTGACAGTTGTCATATTTAGAGGTCCTGGCTACCTTT
TGATAATGCATCATCGTGCAAGGATTTTTTTTACTGACAATGATTTTCTC
TTTTGTCTAGATGAATGGTTTCTCAAGCcagatgtagaacatgaaaatat
ttccaGCTATCTGAAAGAAGGTACAATGGTTTGAAAATATCTATAGTCTA
AGGATAATGATCAAGGATTTATTCATCGTCGAGCTTGTTTTCATAGTAGC
TTTACCGTCAATGTAATAAAGAATTGACAACGCTTTTACGGTTGTTGCCT
AGATCATCGAAACCcaattttaacccaaatgttcactcaaaagtgcagaa
ctctcaaattgatcatttctcatttttgtaaaaataccaggtctaaaaaa
agtaagaatacgttaagaatatttcaccctcaattttggcactttcttaa
gaatacttgacccttatccaaagtacactattcttataaagataaaAAGG
CGTACTTTAACTAAAGCTTGCATTGTATTTCCTCCCCGATCTTTCTAGTA
ATCGAGGATTGGCAATCTGACATGGACAGCCATaccaaattaaaaatcaa
atcttCTCCTGCCATGTTGATCATATCTTCGGGTGGACAAAGAGCTGTTG
ATCTTCTACGGTAAAAGCTTTTATAAAATTACGTTTTTGATGGTAGAATT
TTCAAATGGTTTAATCTTTTAATTTCGTGAATGCAGTAGTAACAGCAAAT
ATCAAGAGTAAGATTGTATTATGACAATAAGTAAAATTTACTGCATGTTT
TACTTATAGGGAGACGAAAGCTTTTCGTGGGGAGCAATGCAAATGCACGA
AATTATTTGCCAAACATTTCAAGGTAAACATCTATAAATGTTCTCCTCCT
ACTAGTAGGGGGCCAATTAGGCccggcaaaagtttttatgactAAAAAAC
TGACGTTCACAGGCAAAACTGTAAGggaaaaaaataagtaaaaaattgac
gtttttcaaaagtcaaatccGAAAGAAATGAATGGGACCATCGGAAAgaa
catgaaattctgagcaaaaaagtatactacaaCAAGTCTCTTACTCGAAC
ACGCAAAGAAATACGGCCACTTAAAGTTCAAAATTCTGTCAGACTCCGTA
CggtttagacaaaatttgacgtcaatcgtacTCTATCGACATGCGGTTGC
GTCGCATAAAATATGTCACGGATCCTAAGGATTGGTCCCCTACTATACCC
TGTTTCCTGcatatctttgtttttcttaaaactcTTTAGACTATAGACGT
CGGTATTTGATAGAATACTCTGAAATTTCCCTGGCATATTCCTCAGTTCT
AAATCCTTTGTTCGTCCATCTGCTAAGATACGTTTTGATAATCACTTCAA
CTATTGCGCAGGTATCAGAGCAAGTGAAGTACTTGAAAAGTAACATTGTA
CATCTCGGAGTTGGAACACCGAATCGAATATTGAAACTCATCGAAGAAGG
TAAGAGATGGATGTATTcgtttcaactttttttgaagaaataaatgACAG
CTCCTTGCATGTTTACAATTCGTATTTTCACATATGCCATGTAAAATACG
AAGACCCTTTTTACACATAGTGAAAAATAAGACCCTTTTTACACATAGTG
AAAAATAAGACCCTTTTCATACACAGTGAACAAGTAAGACCCTTTTTACA
CAATAAACAAATAGTAGCTAGGAAGTAGTCGAGGTTGATGTTTAAATCAT
ATTTTTGCGTTATTTATAGACGGTCTGGATCTAtctaatgtcaaatatat
cataATCGATTGGAGCTGGAGGGATGTGAAAACTCGACAAATAACTACAA
TGCCTGGAGTGAATGAAGACTTGCGCACTctgtttgaaaaatatcttttt
gaaAGATGTAGAATGAAATCTCTACAAGTAggtctattttgaaaataaat
attttataaaaatactaGAGACAAGAAATATATGTATGAATGaagacaat
ataaatagccTCGATTTATTAGGCGCTGGAactttgaaatgatttttgat
aattttcttatttttgtatGAATCAAACAAACCTTGTTTCTAATTAATTT
TCGGTAATTATTTTCAGACATTGTTTTTCAACAAGATTTTTACGTAAGAG
CATTTCATAGACAAGCAAGAATCTGAACCACTGTATCAACTAAATATTGT
CAGCTTTTATTTCAGGGCAATTCGAGTGCGTTATTTTTCTTTCCCATCTC
AGGTGTCCATTGTTGCTTGGTTGATCCATAACTATTTACACTATTCATTG
GCCTTAGTTCTAAATTGGATCGTTTGGAATCCTGGAGGGTCAAGATGTTA
CGTATAGCTGTCNTCTTAGTTCTAAATTGGATCGTTTTGAATCCTGGAGG
GTCAAGATGTTACGTATAGCTGTCTTTATATCACGATGCGTCAACCCAAA
GATGAAAATATTGATTGTGCTTTTAGAGTATCCGAACAGGACTGTCCATA
AGCGAACTTTAAAAAGAAGTATCCATTGCTCACTATCATCGTCTGTATAT
TGTTGGATGAGATTAACAATCGCGAAAGGTCCCCAACAAATGACAATAGT
TGCTAGAACGGAAACTAGAGAGCTCGATAATTTTCGTTCCATTAGTACTT
GcttcttctttctttgttttgaatcaGAACCATTGGATTTTGTGATGCGT
TCAATCTGTTCTTGTCCTACTTTATAGATCTGGACAGCACAGTATATGCA
GATGATAAAGGAGATCAACATTTCTACTGGTGCCCCATAAGCCATTAGGA
GCTCTGTCTCTGGTTGAGCAACCATAACGCCCACTGCCACGCCCATACAC
CACATATTGATACATAAAAGCAATGCCCGTTTCTTTGTGACGTAATTTTC
ATAATGGAACGGTTTCGTGATCCGTAACATgcgatcaaaacaaacacaaa
acgcGTTTCCAATGGATACTGAACACGTGAAAAATGCAATAGCGAATTTA
TAATGATGTATCTGACAAGTGTGGTATGACCAGTCTATCAACACCAAACT
GTACAAAGGCTGCACAACAAGCCCAACCAAGAAATCAGATAAAGCTAACG
AGAGAATGAAATAAATAGAGGTCTGTGAACgaagttgttttgatttgagg
atAGCCACAATGATGAGTGCATTTCCAAATATGGCAATTACTGTGAAAAC
AATGTTGAGGAGGTTAAGTACGAGTTGGCCAGGTATCTTTGGGATGTACT
CTTCAGCTTCGCAAAGAGTCTTCATTGTAACCCTTGTCTTGCTTTTGTCT
TTACCAGTCCAGGATTTGTTGTTTTGGCACAATAACACCAATAATGAATA
ACAGATTTCGACGTTACAATAGGTATTTCCTAGTGACCGTTcagttttgt
cagaaaaactGAGCACTCAAGTTAACCGTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004573XLOC_004573Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008107-exon-sc0000082-1491911889:258526..258672TCONS_00008107-exon-sc0000082-1491911889:258526..258672Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1510915933:258526..258672TCONS_00008107-exon-sc0000082-1510915933:258526..258672Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1575043694:258526..258672TCONS_00008107-exon-sc0000082-1575043694:258526..258672Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1491911889:260802..260926TCONS_00008107-exon-sc0000082-1491911889:260802..260926Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1510915933:260802..260926TCONS_00008107-exon-sc0000082-1510915933:260802..260926Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1575043694:260802..260926TCONS_00008107-exon-sc0000082-1575043694:260802..260926Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1491911889:261221..261329TCONS_00008107-exon-sc0000082-1491911889:261221..261329Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1510915933:261221..261329TCONS_00008107-exon-sc0000082-1510915933:261221..261329Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1575043694:261221..261329TCONS_00008107-exon-sc0000082-1575043694:261221..261329Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1491911889:261586..261645TCONS_00008107-exon-sc0000082-1491911889:261586..261645Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1510915933:261586..261645TCONS_00008107-exon-sc0000082-1510915933:261586..261645Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1575043694:261586..261645TCONS_00008107-exon-sc0000082-1575043694:261586..261645Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1491911889:262024..262135TCONS_00008107-exon-sc0000082-1491911889:262024..262135Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1510915933:262024..262135TCONS_00008107-exon-sc0000082-1510915933:262024..262135Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1575043694:262024..262135TCONS_00008107-exon-sc0000082-1575043694:262024..262135Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1491911889:262285..262348TCONS_00008107-exon-sc0000082-1491911889:262285..262348Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1510915933:262285..262348TCONS_00008107-exon-sc0000082-1510915933:262285..262348Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1575043694:262285..262348TCONS_00008107-exon-sc0000082-1575043694:262285..262348Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1491911889:262887..262974TCONS_00008107-exon-sc0000082-1491911889:262887..262974Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1510915933:262887..262974TCONS_00008107-exon-sc0000082-1510915933:262887..262974Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1575043694:262887..262974TCONS_00008107-exon-sc0000082-1575043694:262887..262974Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1491911889:263245..263402TCONS_00008107-exon-sc0000082-1491911889:263245..263402Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1510915933:263245..263402TCONS_00008107-exon-sc0000082-1510915933:263245..263402Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1575043694:263245..263402TCONS_00008107-exon-sc0000082-1575043694:263245..263402Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1491911889:264203..264909TCONS_00008107-exon-sc0000082-1491911889:264203..264909Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1510915933:264203..264909TCONS_00008107-exon-sc0000082-1510915933:264203..264909Clytia hemisphaericaexon
TCONS_00008107-exon-sc0000082-1575043694:264203..264909TCONS_00008107-exon-sc0000082-1575043694:264203..264909Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:258526..264909 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.0252	32.9452	13.928	14.2714	8.97794	7.42097	13.0287	13.1977	19.9296	17.3581	19.6215	17.0366	12.271	10.8459	13.6414	13.8722	18.8749	18.3523	4.70053	3.98852	14.2619	13.4534	34.0558	29.5918	13.9919	14.8744	8.91942	7.42612	18.3073	20.6369
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
[Close]
BLAST of TCONS_00008107 vs. Swiss-Prot (Human)
Match: CMS1 (Protein CMSS1 OS=Homo sapiens GN=CMSS1 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.059e-34
Identity = 69/162 (42.59%), Postives = 104/162 (64.20%), Query Frame = 3 
Query:  381 DEWFLKPDVEHENISSYLKEVIEDWQSDMDSHTKLKIKSSPAMLIISSGGQRAVDLLRETKAFRGEQCKCTKLFAKHFKVSEQVKYLKSNIVHLGVGTPNRILKLIEEDGLDLSNVKYIIIDWSWRDVKTRQITTMPGVNEDLRTLFEKYLFERCRMKSLQI 866
            D  FLK +    ++SSYLKE+   W     +H++   K S  MLII S   RA++L+R   AFRG+  K  KLFAKH KV  QVK L+  +VHLGVGTP RI +L+++ GL+LS +K+++ DW+WRD K R++  +P + +++  L E  +   C+ +SL++
Sbjct:  119 DSCFLKANDLTHSLSSYLKEICPKWVKLRKNHSE---KKSVLMLIICSSAVRALELIRSMTAFRGDG-KVIKLFAKHIKVQAQVKLLEKRVVHLGVGTPGRIKELVKQGGLNLSPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELLEMGVLSLCKSESLKL 276
The following BLAST results are available for this feature:
BLAST of TCONS_00008107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CMS11.059e-3442.59Protein CMSS1 OS=Homo sapiens GN=CMSS1 PE=1 SV=2[more]
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