TCONS_00008099 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008099
Unique NameTCONS_00008099
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008099 ID=TCONS_00008099|Name=TCONS_00008099|organism=Clytia hemisphaerica|type=transcript|length=2368bp
GCTTTAGTCACCATAAAATATGTCTGCATCGAGTCAACGCGTTCTAGTTC
TTGCCAACCTCATCACTTCTTTGATACGTCATTCCACTGAATAATTAGGG
TAgaagaattgtcattttgaTGACGGTGTTCATTGTCAGCGTATCATCAT
CATATTTCAACTGCTGTTTgaatatttgatgaaattttcaagtcaCAATC
TCTTATGATTCAAAAACACAGCATTTTCTACCATAATTTCTACCTCAACT
TTAATCTAAAATAGATCTGCATTTTCCTCCTATTTTGTTTTCCCTTCAGA
ATGTATTTTCCTACCCTGGTTCATTACATTACGCACCAATTACATGATAG
AACCATTTCGAAGGCTTATCTAATGGAATTCAAATTAATCACATTAATAC
GTTAATTCCTTTTATGGAGGATTGCCGTTTATGTCGTAGTTAAGTGCATC
ATTCTAAATCTGTTTgttatgtattttacagaactaTAAAAAATAATTGC
ACAATTATTACACAAGTTGCCATATAGACAGTTTAGAAACAAATCTTAGA
ACATTTCCCATATAAACGATATAAAGAAGATCGTAATTAAACCAAAGTCA
GTCTATTTGAACGAAGCTCAAGATGAAACATTCATTTTTCATAGCCATTG
CTGTCATCTTGTTGGTGCAATGTTTGTCGAACGTGTGCTCCAAGCCAATG
TaTGGCCACTCCGACGACAAGAGATATTGTGCTTTGCTGAGTAATAATTG
TAAACTTGGCGCCCCAATAGCCTGTGATATCACAGGAGAAACGTACGATA
ATATTTGTGATTACATGATGCAAATGTGTTTGGCGGGAGCCAAGAATTTC
CCACCCTTGGTAGCGTGTGGGaaaaagcAACAGCGTCACAGGTATTAAAA
TGTTTTCTGTGTCAAACAATTGATAAGTGAACTCAATGATAATCATGCAC
AGGTTCGATGCAATACTATTGGATGTTTGGATGACGCTCTCAACTCGAAT
CAATTCGACTTCGAATCACAAAATATTCCCGAAAACGTTTTGAATCAAGA
TTGATAAATCATCAAAGATTAATACCAAGGGCATCAAGAAGCACTTATGG
CTTGTTAAATAAAGATACAATATCTTGAAATTGTTTcattatttcatttg
aaaaatattatctgtattaaatattaaatttctCCTAAATAGTATATACA
TTGTATAAGAGTTTATGTACATAAAAATCTCACAAAATATTTATCATATT
gtcattttttctataaaatagtCAAACTATATACTTctgttttttaatta
ttcaagtTTAATATTGTATGctacaaaatgttaaaatatgcTCATCATTA
AAATTCAGATTTGAAAGATTGAACATGCCTAAACCTTTATAGCttcaatt
tcgaaaaaaaaacctCCGGGCTTTAGTATATTCCAGAAAGATCATGtaaa
ttgagacaggggtgcttACGTAAAGTAACAAACGTCTAAACAAGTTATAT
TCTCTCGTCTGTCACAACAGAGCCTCTTTGACGtaacttttgtaaaatat
ttgaATGAAATACCATTGTCAGTTTTATTAGAACAGTCAATtggtttgtg
aaaaaaaattatgatctCAACTTTAAAGCATCTGTGTGATCTGAAATCCT
ATTCATCTATTTTAGTATTTTGTCCACAAGGCGAATTCCTTCTTCTTTGA
GCCATTAATGTCACTTTGGATATTTGAAAGTTATGATTATCTTGCTTTTA
CTAGGGAATTTGAATTGTATTGTTCACTGCCACCAAAACATCCTTCCAGT
TGGATAAAAGATTAAACCCAAAGCTTTTTCCCATCGATGATGTAAGTTCT
TCTTTCTTATCGGCATGCAAATTTCTGACCAATTTTTCCGTTAAGAAAGA
CAGTCTCACCGAACATAGAGATTTTGTCTAAGATTGCTGTTCTCACGAAG
AGACTGACGGGACTTGATCCTTCAATCCATGATGTACTCAATAACGTCAC
TTCCTTATGTCTTGCATCAATGCAAAAGTTTTACAAACCAACCTAAGGAT
CGTAGGCGATTGCTTTAAGTGCAACCAGAATTTTGTTCGGTACCGTCTTA
CATAAACGGCCTTTTATATATTTGACAGGAAACTGCAAAGCAAGAAGTTC
CCTTTTCACCTTCTTATACTCTTGTTTCATGTACTTACGAGAGAAAAATG
TTTCTTTCGTCGGGTTCAGTTTGAACCACATTGTTCTATGGTTTTCTACT
CTTTGCGTGCGTAACTCGCCCTGTCTGTTgatcatcaaaaattttttgtt
gttcGAAAGGGAACGGAATCGTGTAAATCCTTTATAAGTTTGTTCCTCAA
GAAGGCAAGATTCGTCTT
Run BLAST on NCBI

transcript from alignment at sc0000082:14788..19143+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008099 ID=TCONS_00008099|Name=TCONS_00008099|organism=Clytia hemisphaerica|type=transcript|length=4356bp|location=Sequence derived from alignment at sc0000082:14788..19143+ (Clytia hemisphaerica)
GCTTTAGTCACCATAAAATATGTCTGCATCGAGTCAACGCGTTCTAGTTC
TTGCCAACCTCATCACTTCTTTGATACGTCATTCCACTGAATAATTAGGG
TAgaagaattgtcattttgaTGACGGTGTTCATTGTCAGCGTATCATCAT
CATATTTCAACTGCTGTTTgaatatttgatgaaattttcaagtcaCAATC
TCTTATGATTCAAAAACACAGCATTTTCTACCATAATTTCTACCTCAACT
TTAATCTAAAATAGATCTGCATTTTCCTCCTATTTTGTTTTCCCTTCAGA
ATGTATTTTCCTACCCTGGTTCATTACATTACGCACCAATTACATGATAG
AACCATTTCGAAGGCTTATCTAATGGAATTCAAATTAATCACATTAATAC
GTTAATTCCTTTTATGGAGGATTGCCGTTTATGTCGTAGTTAAGTGCATC
ATTCTAAATCTGTTTgttatgtattttacagaactaTAAAAAATAATTGC
ACAATTATTACACAAGTTGCCATATAGACAGTTTAGAAACAAATCTTAGA
ACATTTCCCATATAAACGATATAAAGAAGATCGTAATTAAACCAAAGTCA
GTCTATTTGAACGAAGCTCAAGATGAAACATTCATTTTTCATAGCCATTG
CTGTCATCTTGTTGGTGCAATGTTTGTCGAACGTGTGCTCCAAGCCAATG
TGTAAGTTCATTTATCTCTTAAACATAGCATGGTTCATACCTACGAATTC
GACTGTGGAATACCGTTTAGGCCCTTTGAGTGGACAGTACAAGCGTAAAA
AGGCCCCCCACGCGGTTggtgtgatggcgtgatggagggttttttgtggc
gtgatggcgtgaaattttgaaaaaaaaacggtgtgatggcgtgaaaatga
agtgccagcgtgatcgtgaaatcgagtttttttaggccTGATGGTGTGAA
ATTTGCAGTTAAGCGTggtcgtgaaaattatatttattacttgaatcgta
attctatgtccattttagccaatttagagggttttaatttcaaagttttc
ttgTTCGGCCCCAACTATGGCCTCCTATAGATctatttttaaaacataaa
agaaacggtgcaaatAGTTTTATTCATCagccatttatccttgtaacttc
caattgtctttatcagttgctagctagtcttcaaaatataaagtcgaatg
ctatgagatggtcaaaaattgaaatttctcccgtcggcacaAACTATACC
TGCTcttcctccgtaactaacatttccctctctttcttagatgccTATTC
TTAGAAGCATCAAAGACATCAGGTCCTTTATTTCAAGATAATCTATATTT
GTAGCAAAGCCTTAAACAGAAATAAGCAACAGCTTTATCATGAGGTGTAA
TTCTGGGCAGATTGgcattgatcaaaggaatcctgtgatgtttaaaccat
attttggaaaaaagagagtaaaatGAGGGCGATTgtagccatactaaatt
gaaaatttctcccgtcagcgcaaaccatggttgcgcctcctcgtttccct
tttgaaaactattcacgctaattcacaattaatgcccatgggtCCCGTCA
ACGGGGGGAGAGGGGCATGGCCCTCATGTTACCAAAAACACTatttgtac
ttttaaaagatatccattatttttacatgaattatttttcaaattgaatt
aaataaatgggtcctaaaatagcaccttgaacccttcaaaattctaaaat
tttctccgttgcccaaccatggtgggctttgtcaatttactcaaatatac
ctcagccctcaaaccAGGGCCTTTTGATGTGATCCACCAGTTGTGAAACA
ATTTTTCATATGCATAAgttaagattacgtcatttttcctatcggaaaca
cccgaaaaaactggaatttgaccGCTTTGTATTACTACGTgatcaagaaa
atcaaatttttcaggcgtgatggcgtgaaatcgaaaaaaaagtggcgtga
tggcgtgaaatcgaaaaaaaagtggcgtgatggcgtgaaatcgaaaaaaa
agtggcgtgatggcgtgaaatcgaaaaaaaagtggcgtgatggcgtgaaa
tcgaaaaaaaagtggcgtgatggcgtgaaatcgaaaaaaaagtggcgtga
tggcgtgaaatcgaaaaaaaagtggcgtgatggcgtgaaatcgaaaaaaa
agtggcgtgatggcgtgaaatcgaaaaaaaagtggcgtgatggcgtgaaa
tcgaaaaaaaagtggcgtgatggcgtgaaatcgaaaaaaaagtggcgtga
tggcgtgaaatcgaaaaaaaagtggcgtgatggcgtgaaatcgaaaaaaa
agtggcgggatggcgtgaattttgggtccgctgggggggggggctcgtaA
AAGGCGCTTAAGTCAAAGTTTTTATGATACAATGCAATTTTATGGAGAAA
TGCCTAATGTGGAAAACGGGAAAGATTAACTAATTAGGTCGATAATGTTT
GTAAATATCATAaccaatatttattttttcttttgacagaTGGCCACTCC
GACGACAAGAGATATTGTGCTTTGCTGAGTAATAATTGTAAACTTGGCGC
CCCAATAGCCTGTGATATCACAGGAGAAACGTACGATAATATTTGTGATT
ACATGATGCAAATGTGTTTGGCGGGAGCCAAGAATTTCCCACCCTTGGTA
GCGTGTGGGGTaagttttaaattatttttttcttgcctccaaaaaaagat
ttgttCCGAATTTTAAGCGTAATTGTATTCTGTTGCTATACACTAAAATC
AAAagataaatttctttttaatttgcaATCCTAtaatttcgttttctttt
tttatttagaaaaagcAACAGCGTCACAGGTATTAAAATGTTTTCTGTGT
CAAACAATTGATAAGTGAACTCAATGATAATCATGCACAGGTTCGATGCA
ATACTATTGGATGTTTGGATGACGCTCTCAACTCGAATCAATTCGACTTC
GAATCACAAAATATTCCCGAAAACGTTTTGAATCAAGATTGATAAATCAT
CAAAGATTAATACCAAGGGCATCAAGAAGCACTTATGGCTTGTTAAATAA
AGATACAATATCTTGAAATTGTTTcattatttcatttgaaaaatattatc
tgtattaaatattaaatttctCCTAAATAGTATATACATTGTATAAGAGT
TTATGTACATAAAAATCTCACAAAATATTTATCATATTgtcattttttct
ataaaatagtCAAACTATATACTTctgttttttaattattcaagtTTAAT
ATTGTATGctacaaaatgttaaaatatgcTCATCATTAAAATTCAGATTT
GAAAGATTGAACATGCCTAAACCTTTATAGCttcaatttcgaaaaaaaaa
cctCCGGGCTTTAGTATATTCCAGAAAGATCATGtaaattgagacagggg
tgcttACGTAAAGTAACAAACGTCTAAACAAGTTATATTCTCTCGTCTGT
CACAACAGAGCCTCTTTGACGtaacttttgtaaaatatttgaATGAAATA
CCATTGTCAGTTTTATTAGAACAGTCAATtggtttgtgaaaaaaaattat
gatctCAACTTTAAAGCATCTGTGTGATCTGAAATCCTATTCATCTATTT
TAGTATTTTGTCCACAAGGCGAATTCCTTCTTCTTTGAGCCATTAATGTC
ACTTTGGATATTTGAAAGTTATGATTATCTTGCTTTTACTAGGGAATTTG
AATTGTATTGTTCACTGCCACCAAAACATCCTTCCAGTTGGATAAAAGAT
TAAACCCAAAGCTTTTTCCCATCGATGATGTAAGTTCTTCTTTCTTATCG
GCATGCAAATTTCTGACCAATTTTTCCGTTAAGAAAGACAGTCTCACCGA
ACATAGAGATTTTGTCTAAGATTGCTGTTCTCACGAAGAGACTGACGGGA
CTTGATCCTTCAATCCATGATGTACTCAATAACGTCACTTCCTTATGTCT
TGCATCAATGCAAAAGTTTTACAAACCAACCTAAGGATCGTAGGCGATTG
CTTTAAGTGCAACCAGAATTTTGTTCGGTACCGTCTTACATAAACGGCCT
TTTATATATTTGACAGGAAACTGCAAAGCAAGAAGTTCCCTTTTCACCTT
CTTATACTCTTGTTTCATGTACTTACGAGAGAAAAATGTTTCTTTCGTCG
GGTTCAGTTTGAACCACATTGTTCTATGGTTTTCTACTCTTTGCGTGCGT
AACTCGCCCTGTCTGTTgatcatcaaaaattttttgttgttcGAAAGGGA
ACGGAATCGTGTAAATCCTTTATAAGTTTGTTCCTCAAGAAGGCAAGATT
CGTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004569XLOC_004569Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008099-exon-sc0000082-1491911889:14788..15488TCONS_00008099-exon-sc0000082-1491911889:14788..15488Clytia hemisphaericaexon
TCONS_00008099-exon-sc0000082-1510915933:14788..15488TCONS_00008099-exon-sc0000082-1510915933:14788..15488Clytia hemisphaericaexon
TCONS_00008099-exon-sc0000082-1575043694:14788..15488TCONS_00008099-exon-sc0000082-1575043694:14788..15488Clytia hemisphaericaexon
TCONS_00008099-exon-sc0000082-1491911889:17327..17496TCONS_00008099-exon-sc0000082-1491911889:17327..17496Clytia hemisphaericaexon
TCONS_00008099-exon-sc0000082-1510915933:17327..17496TCONS_00008099-exon-sc0000082-1510915933:17327..17496Clytia hemisphaericaexon
TCONS_00008099-exon-sc0000082-1575043694:17327..17496TCONS_00008099-exon-sc0000082-1575043694:17327..17496Clytia hemisphaericaexon
TCONS_00008099-exon-sc0000082-1491911889:17647..19143TCONS_00008099-exon-sc0000082-1491911889:17647..19143Clytia hemisphaericaexon
TCONS_00008099-exon-sc0000082-1510915933:17647..19143TCONS_00008099-exon-sc0000082-1510915933:17647..19143Clytia hemisphaericaexon
TCONS_00008099-exon-sc0000082-1575043694:17647..19143TCONS_00008099-exon-sc0000082-1575043694:17647..19143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:14788..19143 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.90853	4.9012	3.5909	2.78502	0.431876	0.380789	0.32958	0.271179	0.125285	0.966631	0.377458	1.98766	53.0795	54.282	46.9386	26.5536	9.2172	12.3454	41.9754	40.0568	0.124725	0.395227	1.7686	1.52533	0.044934	0.0662915	15.0434	11.3691	4.94632	3.09205
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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