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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008098 ID=TCONS_00008098|Name=TCONS_00008098|organism=Clytia hemisphaerica|type=transcript|length=1354bp
CAGCTATAGAGAAGAAAAGAACAGAAAAAACGAAGAGTTAAAATCGAACA
ACTGAAGTTGCAATTTCAAAGCAAGTCTTCTTTCAGCAAAGAACATCACA
AGATGAAGCATCCATTCGTCTTCATCACTATCATTCTAATACTCATTTCA
AGTCTCGTCTATGCGGCTCCAACTACAAGTGCTCCAGCCCCAGCAGGCCC
ACGACAACGCCTAGTAAAGATCAGTGAAAATGTGTATACATATATCTTTG
AACAAGCATTCCAAAGAAACTCAATGTTCATAATCACAAAACGTGGTGTC
ATTGTTTTCGAACCTTTCAATTCAGACCATTCAAAATTGTTACTGGCTGC
TATCAGATCAGTGACTCAAAAACCGATCAAATTTCTCTTGATCTCACATA
ACCATTATGACCACGCGAATGGAGGTAAAGTTTTCAAAGATGAAGGTGCG
ACGGTCATTGCTCATGAAGAAGCTGTGGATTGGATGAAAGCAAACCCTCA
CCCTGATCTTTACATCCCAGACAGAACTTGGACAGGAACCAAATGCACAA
TCAGACTTGGTGGGGCAAAAGTGGATTTCCATTATTTCGGGATCAACCAT
GGCAACGGAAATACGGTATTTGTTTATAAGCCACCTCGTAGCCAATCAAG
AGCCAAGCGCAATGCTACCAGCAGCCAATCAAAGAGCGAGAATATTGCGT
TTATGGCAGATCTTGTCACACCCAATCAAGTGTTTTTCAGCAATGCACCC
GATTATAACATCAAAGAAACTGTGAGAACACTCCGTGAAATCCTGAAACT
TGATTTCGAAAAAGCTGTTTTCTCGCACAGCGCGCGGGGAGATTTAAGTG
CCGACGGATCAAAACAAGATATTCGCGACTTGTTACAGTATGCAGCTGAT
CTAAAAGAAGGTGTTGAAAAGCTTTTTGCTGAAGGAAAATTCCCAATCAC
TAATCCTGAGCTATTGCAACTTCCACAGTACAAACATCTGGCGCGTTATG
ATACCGACTTCTCTAGAAATGTCTTGAAATTCTCTATCGAGTCTTTCATT
GGACCGTATCCATGGAGGAATGTTGACAAATACATGAAACCGAGACAGAG
TAGACCAAGGTATGGAAGAAGATACTGGGAACGCAGCAACCCAACCCAAC
CCAACAACTGGAACCGATACTCCCTCTGATATTTTGATGATGCAAGGACA
CTTTTATGAAATCATAAAAGGATAAATGAAAATTAAGCTACGGTAAATGA
TACTCTTTGTTCCTTCATGCCTACCAAATCGTTTTGTTCAGTATATTTTG
AATTTACATATATTTTCTCCTGTAACTCTTtataaattttgactttaata
TTTC Run BLAST on NCBI protein sequence of TCONS_00008098-protein >TCONS_00008098-protein ID=TCONS_00008098-protein|Name=TCONS_00008098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
MKHPFVFITIILILISSLVYAAPTTSAPAPAGPRQRLVKISENVYTYIFE
QAFQRNSMFIITKRGVIVFEPFNSDHSKLLLAAIRSVTQKPIKFLLISHN
HYDHANGGKVFKDEGATVIAHEEAVDWMKANPHPDLYIPDRTWTGTKCTI
RLGGAKVDFHYFGINHGNGNTVFVYKPPRSQSRAKRNATSSQSKSENIAF
MADLVTPNQVFFSNAPDYNIKETVRTLREILKLDFEKAVFSHSARGDLSA
DGSKQDIRDLLQYAADLKEGVEKLFAEGKFPITNPELLQLPQYKHLARYD
TDFSRNVLKFSIESFIGPYPWRNVDKYMKPRQSRPRYGRRYWERSNPTQP
NNWNRYSL Run BLAST on NCBI transcript from alignment at sc0000082:7372..9278+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008098 ID=TCONS_00008098|Name=TCONS_00008098|organism=Clytia hemisphaerica|type=transcript|length=1907bp|location=Sequence derived from alignment at sc0000082:7372..9278+ (Clytia hemisphaerica)
CAGCTATAGAGAAGAAAAGAACAGAAAAAACGAAGAGTTAAAATCGAACA
ACTGAAGTTGCAATTTCAAAGCAAGTCTTCTTTCAGGTAAGAATCTTGCC
AACTTtagaagaaatattttgtgaAAATAGTGGTTCGCCCTTATCAAATT
CAACGGATTTAAATAAatccatcaattttttttccgcttatattgttttt
ttaaagatttttttaggtactctgaaaataaaagagaaGGTATACAGCGG
TAGACCTTTcatcacaatttgaaataatCATGCAAGGATCGCTTAATAAC
TTCAGCAATGGTTCTGCTTCAAAGAGCTAActcaaaatgaaatatattac
gaaaaaattttttcagattaCCGCACTCCTTCCTTTAAAAGAAATCTGCA
TTTATATGTCacctttttttgcctttttcatCATGTAGCAAAGAACATCA
CAAGATGAAGCATCCATTCGTCTTCATCACTATCATTCTAATACTCATTT
CAAGTCTCGTCTATGCGGCTCCAACTACAAGTGCTCCAGCCCCAGCAGGC
CCACGACAACGCCTAGTAAAGATCAGTGAAAATGTGTATACATATATCTT
TGAACAAGCATTCCAAAGAAACTCAATGTTCATAATCACAAAACGTGGTG
TCATTGTTTTCGAACCTTTCAATTCAGACCATTCAAAATTGTTACTGGCT
GCTATCAGATCAGTGACTCAAAAACCGATCAAATTTCTCTTGATCTCACA
TAACCATTATGACCACGCGAATGGAGGTAAAGTTTTCAAAGATGAAGGTG
CGACGGTCATTGCTCATGAAGAAGCTGTGGATTGGATGAAAGCAAACCCT
CACCCTGATCTTTACATCCCAGACAGAACTTGGACAGGAACCAAATGCAC
AATCAGACTTGGTAAACATTGATATTgttttgtctttctttttaattcaa
aaaataaaataagtcctctcagctggaaagtggcttatctctataatttg
aatctttctctaattcgaagaaaatgttttgtcacttgaaatcaaattag
agagagtcctGTATAGTATTTCTATATGTATTCATTTCATGCCCAATATT
GTTTTTCTTTAGGTGGGGCAAAAGTGGATTTCCATTATTTCGGGATCAAC
CATGGCAACGGAAATACGGTATTTGTTTATAAGCCACCTCGTAGCCAATC
AAGAGCCAAGCGCAATGCTACCAGCAGCCAATCAAAGAGCGAGAATATTG
CGTTTATGGCAGATCTTGTCACACCCAATCAAGTGTTTTTCAGCAATGCA
CCCGATTATAACATCAAAGAAACTGTGAGAACACTCCGTGAAATCCTGAA
ACTTGATTTCGAAAAAGCTGTTTTCTCGCACAGCGCGCGGGGAGATTTAA
GTGCCGACGGATCAAAACAAGATATTCGCGACTTGTTACAGTATGCAGCT
GATCTAAAAGAAGGTGTTGAAAAGCTTTTTGCTGAAGGAAAATTCCCAAT
CACTAATCCTGAGCTATTGCAACTTCCACAGTACAAACATCTGGCGCGTT
ATGATACCGACTTCTCTAGAAATGTCTTGAAATTCTCTATCGAGTCTTTC
ATTGGACCGTATCCATGGAGGAATGTTGACAAATACATGAAACCGAGACA
GAGTAGACCAAGGTATGGAAGAAGATACTGGGAACGCAGCAACCCAACCC
AACCCAACAACTGGAACCGATACTCCCTCTGATATTTTGATGATGCAAGG
ACACTTTTATGAAATCATAAAAGGATAAATGAAAATTAAGCTACGGTAAA
TGATACTCTTTGTTCCTTCATGCCTACCAAATCGTTTTGTTCAGTATATT
TTGAATTTACATATATTTTCTCCTGTAACTCTTtataaattttgacttta
ataTTTC Coding sequence (CDS) from alignment at sc0000082:7372..9278+ >TCONS_00008098 ID=TCONS_00008098|Name=TCONS_00008098|organism=Clytia hemisphaerica|type=CDS|length=2154bp|location=Sequence derived from alignment at sc0000082:7372..9278+ (Clytia hemisphaerica)
ATGAAGCATCCATTCGTCTTCATCACTATCATTCTAATACTCATTTCAAG
TCTCGTCTATGCGGCTCCAACTACAAGTGCTCCAGCCCCAGCAGGCCCAC
GACAACGCCTAGTAAAGATCAGTGAAAATGTGTATACATATATCTTTGAA
CAAGCATTCCAAAGAAACTCAATGTTCATAATCACAAAACGTGGTGTCAT
TGTTTTCGAACCTTTCAATTCAGACCATTCAAAATTGTTACTGGCTGCTA
TCAGATCAGTGACTCAAAAACCGATCAAATTTCTCTTGATCTCACATAAC
CATTATGACCACGCGAATGGAGGTAAAGTTTTCAAAGATGAAGGTGCGAC
GGTCATTGCTCATGAAGAAGCTGTGGATTGGATGAAAGCAAACCCTCACC
CTGATCTTTACATCCCAGACAGAACTTGGACAGGAACCAAATGCACAATC
AGACTTGGTGGGGCAAAAGTGGATTTCCATTATTTCGGGATCAACCATGG
CAACGGAAATACGGTATTTGTTTATAAGCCACCTCGTAGCCAATCAAGAG
CCAAGCGCAATGCTACCAGCAGCCAATCAAAGAGCGAGAATATTGCGTTT
ATGGCAGATCTTGTCACACCCAATCAAGTGTTTTTCAGCAATGCACCCGA
TTATAACATCAAAGAAACTGTGAGAACACTCCGTGAAATCCTGAAACTTG
ATTTCGAAAAAGCTGTTTTCTCGCACAGCGCGCGGGGAGATTTAAGTGCC
GACGGATCAAAACAAGATATTCGCGACTTGTTACAGTATGCAGCTGATCT
AAAAGAAGGTGTTGAAAAGCTTTTTGCTGAAGGAAAATTCCCAATCACTA
ATCCTGAGCTATTGCAACTTCCACAGTACAAACATCTGGCGCGTTATGAT
ACCGACTTCTCTAGAAATGTCTTGAAATTCTCTATCGAGTCTTTCATTGG
ACCGTATCCATGGAGGAATGTTGACAAATACATGAAACCGAGACAGAGTA
GACCAAGGTATGGAAGAAGATACTGGGAACGCAGCAACCCAACCCAACCC
AACAACTGGAACCGATACTCCCTCTGAATGAAGCATCCATTCGTCTTCAT
CACTATCATTCTAATACTCATTTCAAGTCTCGTCTATGCGGCTCCAACTA
CAAGTGCTCCAGCCCCAGCAGGCCCACGACAACGCCTAGTAAAGATCAGT
GAAAATGTGTATACATATATCTTTGAACAAGCATTCCAAAGAAACTCAAT
GTTCATAATCACAAAACGTGGTGTCATTGTTTTCGAACCTTTCAATTCAG
ACCATTCAAAATTGTTACTGGCTGCTATCAGATCAGTGACTCAAAAACCG
ATCAAATTTCTCTTGATCTCACATAACCATTATGACCACGCGAATGGAGG
TAAAGTTTTCAAAGATGAAGGTGCGACGGTCATTGCTCATGAAGAAGCTG
TGGATTGGATGAAAGCAAACCCTCACCCTGATCTTTACATCCCAGACAGA
ACTTGGACAGGAACCAAATGCACAATCAGACTTGGTGGGGCAAAAGTGGA
TTTCCATTATTTCGGGATCAACCATGGCAACGGAAATACGGTATTTGTTT
ATAAGCCACCTCGTAGCCAATCAAGAGCCAAGCGCAATGCTACCAGCAGC
CAATCAAAGAGCGAGAATATTGCGTTTATGGCAGATCTTGTCACACCCAA
TCAAGTGTTTTTCAGCAATGCACCCGATTATAACATCAAAGAAACTGTGA
GAACACTCCGTGAAATCCTGAAACTTGATTTCGAAAAAGCTGTTTTCTCG
CACAGCGCGCGGGGAGATTTAAGTGCCGACGGATCAAAACAAGATATTCG
CGACTTGTTACAGTATGCAGCTGATCTAAAAGAAGGTGTTGAAAAGCTTT
TTGCTGAAGGAAAATTCCCAATCACTAATCCTGAGCTATTGCAACTTCCA
CAGTACAAACATCTGGCGCGTTATGATACCGACTTCTCTAGAAATGTCTT
GAAATTCTCTATCGAGTCTTTCATTGGACCGTATCCATGGAGGAATGTTG
ACAAATACATGAAACCGAGACAGAGTAGACCAAGGTATGGAAGAAGATAC
TGGGAACGCAGCAACCCAACCCAACCCAACAACTGGAACCGATACTCCCT
CTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008098-exon-sc0000082-1491911889:7372..7457 | TCONS_00008098-exon-sc0000082-1491911889:7372..7457 | Clytia hemisphaerica | exon |
| TCONS_00008098-exon-sc0000082-1510915933:7372..7457 | TCONS_00008098-exon-sc0000082-1510915933:7372..7457 | Clytia hemisphaerica | exon |
| TCONS_00008098-exon-sc0000082-1575043694:7372..7457 | TCONS_00008098-exon-sc0000082-1575043694:7372..7457 | Clytia hemisphaerica | exon |
| TCONS_00008098-exon-sc0000082-1491911889:7810..8282 | TCONS_00008098-exon-sc0000082-1491911889:7810..8282 | Clytia hemisphaerica | exon |
| TCONS_00008098-exon-sc0000082-1510915933:7810..8282 | TCONS_00008098-exon-sc0000082-1510915933:7810..8282 | Clytia hemisphaerica | exon |
| TCONS_00008098-exon-sc0000082-1575043694:7810..8282 | TCONS_00008098-exon-sc0000082-1575043694:7810..8282 | Clytia hemisphaerica | exon |
| TCONS_00008098-exon-sc0000082-1491911889:8484..9278 | TCONS_00008098-exon-sc0000082-1491911889:8484..9278 | Clytia hemisphaerica | exon |
| TCONS_00008098-exon-sc0000082-1510915933:8484..9278 | TCONS_00008098-exon-sc0000082-1510915933:8484..9278 | Clytia hemisphaerica | exon |
| TCONS_00008098-exon-sc0000082-1575043694:8484..9278 | TCONS_00008098-exon-sc0000082-1575043694:8484..9278 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000082 | supercontig | sc0000082:7372..9278 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001279 | Metallo-B-lactamas |
Blast
The following BLAST results are available for this feature:
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