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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008097 ID=TCONS_00008097|Name=TCONS_00008097|organism=Clytia hemisphaerica|type=transcript|length=1558bpRun BLAST on NCBI protein sequence of TCONS_00008097-protein >TCONS_00008097-protein ID=TCONS_00008097-protein|Name=TCONS_00008097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp MMINILKSGLQQGEEKVLSAKMFAPNDPSQGPEGYCFVQFADNISACQGMRun BLAST on NCBI transcript from alignment at sc0000082:671..5234+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008097 ID=TCONS_00008097|Name=TCONS_00008097|organism=Clytia hemisphaerica|type=transcript|length=4564bp|location=Sequence derived from alignment at sc0000082:671..5234+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000082:671..5234+ >TCONS_00008097 ID=TCONS_00008097|Name=TCONS_00008097|organism=Clytia hemisphaerica|type=CDS|length=11610bp|location=Sequence derived from alignment at sc0000082:671..5234+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008097 vs. Swiss-Prot (Human)
Match: TIAR (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 4.056e-64 Identity = 124/303 (40.92%), Postives = 177/303 (58.42%), Query Frame = 1
Query: 43 DPAATVLYVGNLDRRVTDVMMINILKSGLQQGEEKVLSAKMFA---PNDPSQGPEGYCFVQFADNISACQGMTFLNGRDFCGKKVKVNWATNSNSGGPGNYKIIGSSVTIFVGDLDDEITDTELKQAFDPFGEILNAKIVRDLTTQKSKNYGFISFSNKPDAEKAIRDMHGAMLKRRPIKTNWATRSQKSENGGQR--SSELDYDEVTKESSPENCTVYVSNLPDRVTDEAIMRHFGDFGKIIGKPRLFEGKNFCFIRYDSHDTATSAICKGNGTELNGSILKCWWGKENAADNHNGPTSNYS 936
D LYVGNL R VT+V+++ + Q G K S KM NDP YCFV+F ++ A + +NGR GK+VKVNWAT +S K + +FVGDL EIT ++K AF PFG+I +A++V+D+ T KSK YGF+SF NK DAE AI M G L R I+TNWATR + Q + +L +++V +SSP+NCTVY + +TD+ + + F FG+I+ + R+F K + F+R+ +H++A AI NGT + G ++KC+WGKE+ N +YS
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFS---QIGPCK--SCKMITEHTSNDP------YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSS----QKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIM-EIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYS 291 The following BLAST results are available for this feature:
BLAST of TCONS_00008097 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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