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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008050 ID=TCONS_00008050|Name=TCONS_00008050|organism=Clytia hemisphaerica|type=transcript|length=1856bp
cataacagtacttgcgaaatttgtaaacaaactgtatgcagcagatacaa
aatcaaaacaaatgtcacatgtcaaaataaaacatcaagccaaatatggc
taatttttattgttcaattgttttacaagtttgttttggacacgtgattt
taattgttctctttaaagacacgtggttcgcacaatgtttacattttact
actttaatgtccctttaaagggCTAAGAAAGTTTTTGTTATTAAGTCGTC
CACGACAAGAAGGAAACAATATCTAAAGTATAATCACAGTAAATGTGCGA
TCTTTCCTTTTGTCGTGTGGAAACCAatcccttgagagtggtttccaaGT
TGTGTAGTATGATAACAGTTAATTAAATTCTGCATTTGAGGTGCATGTTT
TTTCATGCATGTACAGAAAGTTAAGTCATATTGTTTTCTTTGTATGTACC
TcaatcaaaatttggaaattgggCAACGTCCGTTAAAAAATAAACTTCTT
GACTCTAAGAAGAGTGATTAAGGTCTCTGGCAATTTTGAATGCTTACTAT
TGAtcgaaatgaatttaaaaatttctgaaatatttATACTAGTGTTGTTG
TTGTAATATTATCAAAGGTAAAATATTTGGAAAACTACATTACTAACGTG
TATTTGTTGTAATTATTTTCTATTagcaaattgaagaaaaaaacccTAGA
TAAAAAAACTTACTTTACAATTTTTTAGACATTACTTTAAATACACAAAT
AAATGATGGATTGGGCTCTTCAAGAATATGTTCGTTTGTACataggggtg
gaggatatagtgtccgaaGGGTAGTGGAAGGTCTACAAAATTTGCACTGT
CCCGGGTTAAACTTGCTGTGTTtcagggtaattttgaatgtccagctGGG
TCAACCGATGCTTGTtcgggggttagacctgctgtccggggggggggtct
tAAGTCAGAATGGTCGggggtaaatttctaaaaaatgttatatcctccac
cccctatcAGAGCCCATTACTACTTTTTAGGATGGCTCTTAAATTTGGTA
CGATTAGGAGGAAAAAGTCTCGTCATCTTCATTGTCAGCTCACTTTTTTG
TTCGCTGATTTACGTGGTAAAACTTTGTTGAGTGGCGAGATTAGTTTTGA
TCTGAAGATTAAGAGCCGGGTGGTTCATGATGGtattttttgcttgtaaa
aatGTTAAGAAGTTCTAAGTTCTGCCGGTTGAAAGACTTTTACTGGGTGG
TCGCGGATAAATGTTTTATAGTAGATTACGCAGTACTGATAATTAACACC
ATTCAGTCTTAATTATCCTACTTTCGCAATTCATAAATGGCAAATTCTAC
ATTTAGGTTTAAATCTGTCCGATTCTGGGAAACAGAACTgaaattcaaaa
cataaaaaaaatctaaagtgtCAAAATTATGATATAGCCTATTCCAAAAA
AGTTTTGCTTTTTGTCCTGAAGGTCTACTCGATGATCCCCAGCGTTTGTA
GCCCCAAGATAGACCATATTTGCAGGTAATTGAATTTAACCAAAAGAATG
ACTTCTTTTTGTTTCGGAGCAAAATACAAtcgtaacgtgtgaacatggtc
aaGGTTGCTGGAACTAGAATGAGACTGTACCCAACATAATAATAGAATAA
TAGGGAAATGTTCGACTTACACAAGCCTCGGAATTTGATTGGTCAACCTC
ATTCGGGCGTGACTTTTTATTGGTCAGTAGTATCTTCATCGTTATCACTA
ATGGGCGGGTTGTTTTCCTTGATTTTGACGACGGGTTCTTTGCAGAAGAA
ACAATCTTTACTGTTCATGAGATGTCGTGTAATACAGGGCCTGAAATAGT
GGAGAT Run BLAST on NCBI transcript from alignment at sc0000081:609501..611411- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008050 ID=TCONS_00008050|Name=TCONS_00008050|organism=Clytia hemisphaerica|type=transcript|length=1911bp|location=Sequence derived from alignment at sc0000081:609501..611411- (Clytia hemisphaerica)
CATAACAGTACTTGCGAAATTTGTAAACAAACTGTATGCAGCAGATACAA
AATCAAAACAAATGTCACATGTCAAAATAAAACATCAAGCCAAATATGGC
TAATTTTTATTGTTCAATTGTTTTACAAGTTTGTTTTGGACACGTGATTT
TAATTGTTCTCTTTAAAGACACGTGGTTCGCACAATGTTTACATTTTACT
ACTTTAATGTCCCTTTAAAGGGCTAAGAAAGTTTTTGTTATTAAGTCGTC
CACGACAAGAAGGAAACAATATCTAAAGTATAATCACAGTAAATGTGCGA
TCTTTCCTTTTGTCGTGTGGAAACCAATCCCTTGAGAGTGGTTTCCAAGT
TGTGTAGTATGATAACAGTTAATTAAATTCTGCATTTGAGGTGCATGTTT
TTTCATGCATGTACAGAAAGTTAAGTCATATTGTTTTCTTTGTATGTACC
TCAATCAAAATTTGGAAATTGGGCAACGTCCGTTAAAAAATAAACTTCTT
GACTCTAAGAAGAGTGATTAAGGTCTCTGGCAATTTTGAATGCTTACTAT
TGATCGAAATGAATTTAAAAATTTCTGAAATATTTATACTAGTGTTGTTG
TTGTAATATTATCAAAGGTAAAATATTTGGAAAACTACATTACTAACGTG
TATTTGTTGTAATTATTTTCTATTAGCAAATTGAAGAAAAAAACCCTAGA
TAAAAAAACTTACTTTACAATTTTTTAGACATTACTTTAAATACACAAAT
AAATGATGGATTGGGCTCTTCAAGAATATGTTCGTTTGTACATAGGGGTG
GAGGATATAGTGTCCGAAGGGTAGTGGAAGGTCTACAAAATTTGCACTGT
CCCGGGTTAAACTTGCTGTGTTTCAGGGTAATTTTGAATGTCCAGCTGGG
TCAACCGATGCTTGTTCGGGGGTTAGACCTGCTGTCCGGGGGGGGGGTCT
TAAGTCAGAATGGTCGGGGGTAAATTTCTAAAAAATGTTATATCCTCCAC
CCCCTATCAGAGCCCATTACTACTTTTTAGGATGGCTCTTAAATTTGGTA
CGATTAGGAGGAAAAAGTCTCGTCATCTTCATTGTCAGCTCACTTTTTTG
TTCGCTGATTTACGTGGTAAAACTTTGTTGAGTGGCGAGATTAGTTTTGA
TCTGAAGATTAAGAGCCGGGTGGTTCATGATGGTATTTTTTGCTTGTAAA
AATGTTAAGAAGTTCTAAGTTCTGCCGGTTGAAAGACTTTTACTGGGTGG
TCGCGGATAAATGTTTTATAGTAGATTACGCAGTACTGATAATTAACACC
ATTCAGTCTTAATTATCCTACTTTCGCAATTCATAAATGGCAAATTCTAC
ATTTAGGTTTAAATCTGTCCGATTCTGGGAAACAGAACTGAAATTCAAAA
CATAAAAAAAATCTAAAGTGTCAAAATTATGATATAGCCTATTCCAAAAA
AGTTTTGCTTTTTGTCCTGAAGGTCTACTCGATGATCCCCAGCGTTTGTA
GCCCCAAGATAGACCATATTTGCAGGTAATTGAATTTAACCAAAAGAATG
ACTTCTTTTTGTTTCGGAGCAAAATACAATCGTAACGTGTGAACATGGTC
AAGGTTGCTNTTTTTGTTTCGGAGCAAAATACAATCGTAACGCGTGAACA
TGGTCAAGGTTGCTGGAACTAGAATGAGACTGTACCCAACATAATAATAG
AATAATAGGGAAATGTTCGACTTACACAAGCCTCGGAATTTGATTGGTCA
ACCTCATTCGGGCGTGACTTTTTATTGGTCAGTAGTATCTTCATCGTTAT
CACTAATGGGCGGGTTGTTTTCCTTGATTTTGACGACGGGTTCTTTGCAG
AAGAAACAATCTTTACTGTTCATGAGATGTCGTGTAATACAGGGCCTGAA
ATAGTGGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008050-exon-sc0000081-1575043694:609809..611411 | TCONS_00008050-exon-sc0000081-1575043694:609809..611411 | Clytia hemisphaerica | exon |
| TCONS_00008050-exon-sc0000081-1575043694:609501..609753 | TCONS_00008050-exon-sc0000081-1575043694:609501..609753 | Clytia hemisphaerica | exon |
| TCONS_00008050-exon-sc0000081-1510915933:609809..611411 | TCONS_00008050-exon-sc0000081-1510915933:609809..611411 | Clytia hemisphaerica | exon |
| TCONS_00008050-exon-sc0000081-1510915933:609501..609753 | TCONS_00008050-exon-sc0000081-1510915933:609501..609753 | Clytia hemisphaerica | exon |
| TCONS_00008050-exon-sc0000081-1491911889:609809..611411 | TCONS_00008050-exon-sc0000081-1491911889:609809..611411 | Clytia hemisphaerica | exon |
| TCONS_00008050-exon-sc0000081-1491911889:609501..609753 | TCONS_00008050-exon-sc0000081-1491911889:609501..609753 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000081 | supercontig | sc0000081:609501..611411 - |
Blast
The following BLAST results are available for this feature:
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