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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008001 ID=TCONS_00008001|Name=TCONS_00008001|organism=Clytia hemisphaerica|type=transcript|length=5434bpRun BLAST on NCBI protein sequence of TCONS_00008001-protein >TCONS_00008001-protein ID=TCONS_00008001-protein|Name=TCONS_00008001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1299bp MNLNLLVFVFLGIVLALGADNYQIVLVQKKDSFKVSCNYDKYQLSKNLTFRun BLAST on NCBI transcript from alignment at sc0000081:487351..524401+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008001 ID=TCONS_00008001|Name=TCONS_00008001|organism=Clytia hemisphaerica|type=transcript|length=37051bp|location=Sequence derived from alignment at sc0000081:487351..524401+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000081:487351..524401+ >TCONS_00008001 ID=TCONS_00008001|Name=TCONS_00008001|organism=Clytia hemisphaerica|type=CDS|length=93600bp|location=Sequence derived from alignment at sc0000081:487351..524401+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008001 vs. Swiss-Prot (Human)
Match: PTPRD (Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens GN=PTPRD PE=1 SV=2) HSP 1 Score: 402.905 bits (1034), Expect = 2.665e-114 Identity = 234/727 (32.19%), Postives = 364/727 (50.07%), Query Frame = 3
Query: 1854 LKAGRNYSISVSAITIKRRTQEELFGPPATRWFQTALKPGTQMKEERSLLIAVILVMVFLVLSSILFAFCYCHRKSLGAGGTSKFYLDS---PEGVISTPFTFGLKMSLRRAETSKRQPMTLEEFEKHVAELHANTDYLFSEEYASLGPNHPEKNEVTYENSKTEANRLKNRYPDIVAYDQSRVRLMSLEGVVGSNYINANYVDGYNSPAQFIATQAPLTHTVSDFWRMCWERKSHIIVMLTNLFERGRKKCDQYWPNSGKESYKNYDVTLIETSQYANYSIRKLKLVRTSITADERRRGATEKVSDGTEGPEERMIFQYHFEEWPDFGTPNDRGSVISFILHCREHEETHPGPPIIHCSAGVGRTGTYIMLDSLMRRFDHTKDVEVFSSLKKLRKQRNYLVQQECQYIFVHDTILDYMMSGSTLIPVETLEE------TVNSKEFFQQIDHQWNILEKQKISPHLQVLCHRTYNTNKNRDHNVVPVDSHRVRISVRSAIEGTDYINASFFDSYHHRNSYIVTQHPLTNTLEDFWRMIWEHNSLIVINLTQHEECQEGDYPDYIPIESEQTFGHFHLRIDEERIENNYTCRKITLRNDETREDQYNSNERQIYHYHFKEWATDFYPRNAFLFELLTDVVQCQSKVRNWYPRRRSFVQNRDPEPPITIHCSCGSGRSAIFALLLSFKEQLESSYRFVDVYSTVKSMMTRRPFLLQNKGQYEFLHKALL 4007
L++G+ Y V A+ ++ P + L P EE L+ V V+ + + I+ A RK + ++ P + P +++ + + P+ + E H+ L AN + FS+EY S+ P + T+E+S E N+ KNRY +++AYD SRV L ++EG+ GS+Y+NANY+DGY +IATQ L T DFWRM WE++S +VM+T L ER R KCDQYWP+ G E++ VTL++T + A Y +R L + G++EK R + Q+ F WPD G P ++F+ + GP ++HCSAGVGRTG +I++D+++ R H K V+++ + +R QRNY+VQ E QYIF+HD +L+ + G+T +P L + + E ++ ++ L K + + N KNR N++P +S RV + +EG+DYINASF D Y + +YI TQ PL T EDFWRM+WEHNS IV+ LT+ E Y P E + +F + E Y R+ + D + R + + F +W P++ E D + K + F Q+ PI++HCS G GR+ +F L E++ VD++ TVK + T+RP ++Q + QY+F ++A L
Sbjct: 1219 LQSGQEYVFFVLAVMEHAESKMYATSPYSDPVVSMDLDPQPITDEEEGLIWVVGPVLAVVFIICIVIAILLYKRKRAESDSRKSSIPNNKEIPSHHPTDPVEL-RRLNFQTPGMASHPPIPILELADHIERLKANDNLKFSQEYESIDPGQ----QFTWEHSNLEVNKPKNRYANVIAYDHSRVLLSAIEGIPGSDYVNANYIDGYRKQNAYIATQGSLPETFGDFWRMIWEQRSATVVMMTKLEERSRVKCDQYWPSRGTETHGLVQVTLLDTVELATYCVRTFALYKN---------GSSEK----------REVRQFQFTAWPDHGVPEHPTPFLAFLRRVKTCNPPDAGPMVVHCSAGVGRTGCFIVIDAMLERIKHEKTVDIYGHVTLMRAQRNYMVQTEDQYIFIHDALLEAVTCGNTEVPARNLYAYIQKLTQIETGENVTGMELEFKRLASSKAHTSRFISANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKV------TDARDGQSRTVRQFQFTDWPEQGVPKSG---EGFIDFIGQVHKT------KEQFGQDG----PISVHCSAGVGRTGVFITLSIVLERMRYE-GVVDIFQTVKMLRTQRPAMVQTEDQYQFSYRAAL 1901 HSP 2 Score: 192.586 bits (488), Expect = 7.528e-49 Identity = 100/257 (38.91%), Postives = 141/257 (54.86%), Query Frame = 3
Query: 2343 NRLKNRYPDIVAYDQSRVRLMSLEGVVGSNYINANYVDGYNSPAQFIATQAPLTHTVSDFWRMCWERKSHIIVMLTNLFERGRKKCDQYWPNSGKESYKNYDVTLIETSQYANYSIRKLKLVRTSITADERRRGATEKVSDGTEGPEERMIFQYHFEEWPDFGTPNDRGSVISFI--LHCREHEETHPGPPIIHCSAGVGRTGTYIMLDSLMRRFDHTKDVEVFSSLKKLRKQRNYLVQQECQYIFVHDTILDYMMS 3107
N+ KNR +I+ Y+ +RV L + GV GS+YINA+++DGY +IATQ PL T DFWRM WE S I+VMLT L E GR+KC QYWP Y+ + V + Y +R+ K V+D +G + R + Q+ F +WP+ G P I FI +H + + GP +HCSAGVGRTG +I L ++ R + V++F ++K LR QR +VQ E QY F + L+Y+ S
Sbjct: 1669 NKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFK------------------VTDARDG-QSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDQYQFSYRAALEYLGS 1906 HSP 3 Score: 129.028 bits (323), Expect = 1.525e-29 Identity = 80/263 (30.42%), Postives = 120/263 (45.63%), Query Frame = 3
Query: 3249 NTNKNRDHNVVPVDSHRVRISVRSAIEGTDYINASFFDSYHHRNSYIVTQHPLTNTLEDFWRMIWEHNSLIVINLTQHEECQEGDYPDYIPIESEQTFGHFHLRIDEERIENNYTCRKITLRNDETREDQYNSNERQIYHYHFKEWATDFYPRNAFLF-ELLTDVVQCQSKVRNWYPRRRSFVQNRDPEPPITIHCSCGSGRSAIFALLLSFKEQLESSYRFVDVYSTVKSMMTRRPFLLQNKGQYEFLHKALLALKVYLNTK 4034
N KNR NV+ D RV +S I G+DY+NA++ D Y +N+YI TQ L T DFWRMIWE S V+ +T+ EE Y P +T G + + + Y R L + + E +R++ + F W P + F L V C N P+ +HCS G GR+ F ++ + E+++ + VD+Y V M +R +++Q + QY F+H ALL NT+
Sbjct: 1380 NKPKNRYANVIAYDHSRVLLSAIEGIPGSDYVNANYIDGYRKQNAYIATQGSLPETFGDFWRMIWEQRSATVVMMTKLEERSRVKCDQYWPSRGTETHGLVQVTLLDTVELATYCVRTFALYKNGSSE------KREVRQFQFTAWPDHGVPEHPTPFLAFLRRVKTC----------------NPPDAGPMVVHCSAGVGRTGCFIVIDAMLERIKHE-KTVDIYGHVTLMRAQRNYMVQTEDQYIFIHDALLEAVTCGNTE 1619 The following BLAST results are available for this feature:
BLAST of TCONS_00008001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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