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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007993 ID=TCONS_00007993|Name=TCONS_00007993|organism=Clytia hemisphaerica|type=transcript|length=2337bp TAGATATATTTCTTTGAATCCTCTTTCTTAGTTAGTCATTTTACATTCAA ACTAATTATGATCATTATATGGAATATATCGATGatgtaaattgaaattg atatcaatattaaaaaccaaagaaaatgatttttgattggATTTAACACC ATTGATGTGACAGTAAATCAAAATGGCTTCTGCAAAGCTTCGGCGCAAGA CTCATCATAATGAGGATAAATTTCTAAGCCCAGAACGCACACGAACAATA AAACCGGCtgattttaaaaatcacaaacaGcTCAAAGATTTGAGCCATGA TGACTTGATTGAGTTGTTGTGTTTAATGGAAGCAGAGCTTCAAGCCAAAG ATGTCCTTCTAAAAGCTGTACTTTCAAGTGACACTGGCCATGCTTTACCG TTGTCCCATCTACTAAACGATGTTGACTTGGCACATGTTGACAATCAGGC AGAGGATAAATCCTATCTACTACAAGGTGAAGAGGAAGATGAAGTGTGGC TGGGTGAACCGTCAGCTCATCTCAACCACGTGGTTGCTTATCATCAAGTT GTCAGGGAACAAATGCAAACGACCGTCCAAGATTTACAGAAAGTTCATAA AGAGGTGGTTGAAAAGTTGGACGAGGAATATCACAAACACGCAGCGGACA CTGCACAAGGCGATGACGTCACTTATATGTTGGAAAAAGAAAGGGAACGT CTTCAAGCACAGaTCGATCAAGAGCAAACGAAGTATGCCGATCTCGAAAA AGAGCGAGATTCGTTACGCGAAACGCTTGAAAAAGAACGTAAAGACTATT ATAACGCTTTTAACGAACTTATGAATGATTGTAAAGCGCTCGCTCAACAG CTGGTCACTCAGTCTTCAAAATAcgagaaaaatcagaaagaccATGACAA ACACCAAAAAGACATTGATAaagagaaaagtaaaaataaagttttaagCG AACTTATGGTTGAAGAGACACAAAAATTCAAGGAAAGGTTAAGACAATAC GAAGAAGAAGTAcgcgattttcatgttctagaACAAAAGAAGACTGATCT TGAGTGTAAATTACTGAACTCTGACAAACAGATGAAAGAATACTACCATC AGTTGAATGATGAACGGAAAAAGAATAGCGCATTAGCGTACGAACTGAAT CAGCTAAGAAAGAAATACCAAGGTGAATTCACGCCTGAGGACGATACGCA CGAAGATGTTTTATTCATGCAAGACCAATACGAAATCCCTGTAAAAGAGG CCAGAACCTCAACCATACAACTGAGTAAACCGGATCGCGACTCCCCGGAG CCGAGTACCGTGCTACCTCCGGCTGTCCCTGTACAAGCTAAAGTAGCGAC AGTCACCAAGTCATCTTCTATACGACAGACGAAAAATTATTCACCTCAAG TTAATAAATCGAACAATATCGTCCCTTTAAATAACCACGCCTCTAATAAT CAGCGTTTGAATTCTTCTTATGTTCAAGCGCCTGACGCACAACAAATTAA AAGACATTCttatgaagaaaaatcaaactatAATAATTCACGGGAAGAGG CTTCCGTAAAGCGGAACTCTTACGAAGGTGCTTTAAACCTTACGGGAACG CCCGAAACTTCACGGACAGCATCGTTAAATAAGAAACCTAGCTCTTACGA AGATATGCGCAACGTCGGGGGTGCCGCCGCCCTTTCCGTAACACCAAAAC GTAACTCGTACGAGGGAGATAGCAAGAAAATACCGCCACCCGCTCCTCCA AGGCGTGGCTCTCAATTGACGCCCCAGGATAGACCACCCATCGTCAAGAT ACCNGCGTGGCTCTCAATTGACGCCCCAGGATCGACCACCCATCGTCAAG ATACCCCAACAGTTTCAACCGAGGAAATCCAACAGTTCAACGCCCTCAGC CACCGATGCTTATAAACAGCAGAATAGGAGCAACAGTTCTACAGGTGTGA TCTCTGCAACAAAGTTCTAAGAACCAATCAAATTAAAGCATGCAACGCAT ATTAAAACCAATCAAGTTAAAGCACTCTACACGCTAAGCCAATCAGATGA AAGCACGTTTACCCGTTTACACAACGCTAAACCAATTAAATTTAGATATA TCACAATATGTAACACAAACTGCCAAATTGTAGAACGTTTCAACTGCACG TTTTGCATGATTTATGCTAACAAACTCCCGAATCCACATATACCCATCAT GACCTTTCCACGCATACATACATTGCTATTGATATGATAAGTCCAATAca cgtatttttataagaacatccaaaatttttgaagtcttcggatattttct taactttctgagttttaagcctaaaaatgttcttaac Run BLAST on NCBI transcript from alignment at sc0000081:341176..347714+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007993 ID=TCONS_00007993|Name=TCONS_00007993|organism=Clytia hemisphaerica|type=transcript|length=6539bp|location=Sequence derived from alignment at sc0000081:341176..347714+ (Clytia hemisphaerica) TAGATATATTTCTTTGAATCCTCTTTCTTAGTTAGTCATTTTACATTCAA
ACTAATTATGATCATTATATGGAATATATCGATGatgtaaattgaaattg
atatcaatattaaaaaccaaagaaaatgatttttgattggATTTAACACC
ATTGATGTGACAGTAAATCAAAATGGCTTCTGCAAAGCTTCGGCGCAAGA
CTCATCATAATGAGGATAAATTTCTAAGCCCAGAACGCACACGAACAATA
AAACCGGCtgattttaaaaatcacaaacaGGTATGATTTATTCAGTGTGT
ATTTTTAAACAGGTTGGGTTAACCCTAAAAATACTTCTATTTAGATTGGC
AAAAAACAAAGTACATTAGGGATAGCCCTTATTAGTGATCAGTTCACTTA
CTCAGACAAAGTGTCCCCTTTTCCTTTTAAAACCAATGATTGAACTAGTT
GTATACCAGTTTTgtacattattttcttttcagcTCAAAGATTTGAGCCA
TGATGACTTGATTGAGTTGTTGTGTTTAATGGAAGCAGAGCTTCAAGCCA
AAGATGTCCTTCTAAAAGCTGTACTTGTAAGATCTgttcatatatttttt
cttttatccctgtcaaaattattttgacaGTACTAAGTACTCCTCTCTGA
TACTATCATATGCAACAGTATAAAACAAAGTATGAGTTTAATCAGGAATT
TTGCCCtatgtattacaatgaagtgaatacagtcgctctcatgttgCCTT
CTGACCGCAAATGGAATGGTTGTGAGTTCAAGTCTCACAGGatcgttggt
tttccaacggttatggtggtcagaagacaacatgagagcgactgtattca
cttcattgcaATGTATGAGTCATGAACGATGCTCTTTCCTTGACATTATC
CACAAAGATACCTTTTTCTGGGACTCTGAAAATATATCTTATGTGACTTC
ATCATTTGCCAATGTCTTTTACGTTTTTGAGTATCATATAGATATCAAAG
CTGCTGTGGGGTCACTGATATTGCTTCATTTCTAATGTTTTAGTCAAGTG
ACACTGGCCATGCTTTACCGTTGTCCCATCTACTAAACGATGTTGACTTG
GCACATGTTGACAATCAGGCAGAGGATAAATCCTATCTACTACAAGGTTA
GTGTTTTTTAATCATTTCTGTTATTTTGCAAATCAGATAGCTCGTGTTGA
TTTATTTCCTTGctaactttcatttttgtttttcagaatttttagaACTT
CCTATCAATAGCAAATTAAGTATGATTTACACTCAGACAATTTCTCCCCA
CCCAATCctttcttttcttcattttgtaaCATTTCCCCTCTTAATGTGGA
GGGATATGAAATTTTTGTATAGTGATGACTCACGCTAAATTGAACTTTTG
GACGTGTACGGTTTGTTCAAACTAGACGGATTCAAATAGTGAAAGTAATT
AGAGTATGTTTTGACAAGTTTAGCAAGAAACAACCAACTGTAAAATATTA
GATGAAATACAACGTATAATATACTTTTTTCAGGTGAAGAGGAAGATGAA
GTGTGGCTGGGTGAACCGTCAGCTCATCTCAACCACGTGGTTGCTTATCA
TCAAGTTGTCAGGGAACAAATGCAAACGACCGTCCAAGATTTACAGAAAG
TTCATAAAGAGGTATCATATATAAGGGGGGCTCCTGATCTAGATTTGAGA
TTAAgacattttttatgatttttcttgGGATCCACAGTCAGCAAGTGGAA
CTTTTTGCTATCTATGAGCATAACAGACTGTCAAAATGGCTATGATTTTG
TATTGAATTAATACCTTTTCACAGTTaatataaaaaatcattaataaaGT
ATCCAACTTTAGGACATATTAATTTGATGAGTTAGATTTGTTTTATACGG
GTATTTCGTTTGTTTATGAAATGCCCATCAACGTTATAGCAAAGTTAGGA
TTCAACCAAATTATGTCATTATTCCATCTGTCAGCTtttcaaaataataa
ctttCAACCTTTGACATTAATTCGAACGCAGCCCGCTTTCCCTTATGtgc
tttcaaagtttaaagatactttaaaggttttgtttttaaaataagaatga
tatcgtttgcttacttaattttgattcacaagttttttcacatggattga
cacggatgtggagcaagttGGTCAGAAAgtttattcagcacaatataaca
ataggcagacactgtcctaatatgaaacatgtgtctgatatgaaagggga
acacttatgtaaaataaAAGCTTTAACAAAATATCAGTAATAATGAACAA
CAAaatgttttactttttataGGTGGTTGAAAAGTTGGACGAGGAATATC
ACAAACACGCAGCGGACACTGCACAAGGCGATGACGTCACTTATATGTTG
GAAAAAGAAAGGGAACGTCTTCAAGCACAGGTTtgatcaaacaatttttt
gaacaGGTTTTAAAATGTGAAATGTATTTAGTGGGAAATGTATCATATCA
ATTTTCCTTCCCCTTGAGAGAGTCTTCGACTGCTTTACccttctttattt
ttataaatcaGAACGATTATTGACTCCtccatttttttcaagttgTGAAA
AATCAACCGCACAAGAAATGTTTCCATGAGTTGGGGAAagttttctttag
aaaaagtgatAATTTCATCCAAATAAACATTGATTGTAATGTATTATTat
gtaaaagtaaaaagtacGAATCATTTAACAAACCTTCTTATCATTCTCTT
AATTCAACTCTCATTTTTTACCAACATCAAGCCCCAAACAATCATAAATT
GCGATTCTTTTTGTCTTTAGTGAAAAAAACTGAAGGTCTGACATGAAACG
TTTTCCTGTTAAAATCGCAATACCAATATCTTTCGGTCAGTTGAGAGGAT
TATATTTAGAGTGCCTTAATAATCTTAATAACTATTCCAGCATCTTCCTA
CTATTAAGtaggggaggggggggggctaaacgAAAATgatatcttttgaa
atatttatcgaTTTGACATGAAATTCCGGACTCCTGCTCTCACAGGCTTT
CATTCAACTTCTCCACTTACTTTGACTGACCTTTAATGAAATTCTATCCG
CCATATTTGACcggaactttttttgaaaaaaaacaacaaaacaaatgaAG
TGCAACGTTGCCTCACGTCaatagatctagcgctctcgatgcatttacat
cTATATCGAGTATTGGTACCAATAGCGTACTCCTTTcgaaaaaaactccg
atcaaagattttgatttattcTATAAGAAAGGGAGGGATAATCACTTACT
CTTGATAAATGGTAATTTTTATTCTTGTCTctaaatttgttttcatttag
aTCGATCAAGAGCAAACGAAGTATGCCGATCTCGNAATTTTTATTCTTGT
CCctaaatttgttttcatttagaTCGATCAAGAGCAAACGAAGTATGCCG
ATCTCGAAAAAGAGCGAGATTCGTTACGCGAAACGCTTGAAAAAGAACGT
AAAGACTATTATAACGCTTTTAACGAACTTATGAATGATTGTAAAGCGCT
CGCTCAACAGCTGGTCACTCAGTCTTCAAAATAcgagaaaaatcagaaag
accATGACAAACACCAAAAAGACATTGATAaagagaaaagtaaaaataaa
gttttaagCGAACTTATGGTTGAAGAGACACAAAAATTCAAGGAAAGGTT
AAGACAATACGAAGAAGAAGTAcgcgattttcatgttctagaACAAAAGA
AGACTGATCTTGAGTGTAAATTACTGAACTCTGACAAACAGATGAAAGAA
TACTACCATCAGTTGAATGATGAACGGAAAAAGAATAGCGCATTAGCGTA
CGAACTGAATCAGCTAAGAAAGAAATACCAAGGTGAATTCACGCCTGAGG
ACGATACGCACGAAGATGTTTTATTCATGCAAGACCAATACGAAATCCCT
GTAAAAGAGGCCAGAACCTCAACCATACAACTGAGTAAACCGGATCGCGA
CTCCCCGGAGCCGAGTACCGTGCTACCTCCGGCTGTCCCTGTACAAGCTA
AAGTAGCGACAGTCACCAAGTCATCTTCTATACGACAGACGAAAAATTAT
TCACCTCAAGTTAATAAATCGAACAATATCGTCCCTTTAAATAACCACGC
CTCTAATAATCAGCGTTTGAATTCTTCTTATGTTCAAGCGCCTGACGCAC
AACAAATTAAAAGACATTCttatgaagaaaaatcaaactatAATAATTCA
CGGGAAGAGGCTTCCGTAAAGCGGAACTCTTACGAAGGTGCTTTAAACCT
TACGGGAACGCCCGAAACTTCACGGACAGCATCGTTAAATAAGAAACCTA
GCTCTTACGAAGATATGCGCAACGTCGGGGGTGCCGCCGCCCTTTCCGTA
ACACCAAAACGTAACTCGTACGAGGGAGATAGCAAGAAAATACCGCCACC
CGCTCCTCCAAGGCGTGGCTCTCAATTGACGCCCCAGGATAGACCACCCA
TCGTCAAGATACCNGCGTGGCTCTCAATTGACGCCCCAGGATCGACCACC
CATCGTCAAGATACCCCAACAGTTTCAACCGAGGAAATCCAACAGTTCAA
CGCCCTCAGCCACCGATGCTTATAAACAGCAGAATAGGAGCAACAGTTCT
ACAGGTTAGTTCACCTTTTATCCACTAACTTTATTCATAATATACTTTTC
TTCATTGCTTGAGAACCAAGATaattaaacatcaaatttgCAGTAATGCA
TTGCGCCAGTGAAATGATCTGACTTGACGTGACGTAGCGACGGGACAAGA
TTTTTTGATTGGCATATCGTACCATTATacgatttatttttaattttgtc
tgTCAGTGTTTCGAAAGAAACTGAATTGCGATGGTGTCTCATGATTAATT
GAAAAGATTCTCCTGGagataatagaccttttcattaattacgtcacgaa
tatcacttgcctcgttttgaaattattgccatggtgattaactcccaccg
gattttattaaaactactttctattcataaaagaatcaTTTTTAATGTTT
CAAGGGACACAATCatcatggtaattgtttgaatacgaggcaagtgatgt
ttgtgacgtaatttatgaaaaggtctatttccccCACTGTTCATTGAGAA
TATTGAAATTCGAGGGACAGGGGAGTTTACTTCAAGACCAGATATCCGGT
GGTCTCAACAGTTGGGGATCAAATTCCATGGAAAAACTATATTTTCAATT
CCTTACTAACCGTTGACTGCTGACTGGAGGAAACAGAATTAGCTTGACAG
GTAGAAAATACAAGTCAATTTGTTTTTGGTTAATGTTTTTAATACAAGCC
AATTTGATTTGGTAATTGTTGAAcagttttatttgttttcatgtgaaaat
attcttgaaagtTATTTGGTCGTTGTTTGACATTGAAAAGTGAGGGTCAG
ATATTAACACAGAGTAGGGCATGGTATCTATCAGGGGGTGTTGTTTGTAT
TTACCTTAAGGGACAACATTTGTGcggaacaaattttcgcggaattttaT
TTCGCGGTTTCTtgacaaatccgcgaaattaaaatcCGCGAACCACGAAt
attctcaggatttaaaaaatcaactgtaaaatctggtaaaattggtcttt
ttagggtaaaaaaggccattttttaaacaaaaagattctctcaaccgtga
aattaaattccgtgaaaatttcttcccttaaggtattaatATAATTCTAA
TACTTGAATATCCATATAATTCTACTTAAATGTAATCAGTAGCCCAAACC
AGCTTTTAAATAAATAACGTACAATAATTATAGTTTGTCGAGATCACACC
TTTAGAAAACTGTTAGAAAGAGGAAAGTCAAAAAATGACGAACTACTTAC
TTACAAACACGATTACCGTAAACACACACGCACACAtaattataataaca
ttacaaCTTTACAGATTAATCTAATATGAAATCATGAGGACAAAACGTTT
TTTAAAACTTAACTTTTGGCCATTTCTGGAAATCTAagttttagaacatt
tttatttgaaaaacaaatttttattacCTATGCTTCACACTAAAAATGAC
AAACAAATCTTACACAAATCCATTTTTTCGTTTCTTCTCGTTCTAGGTGT
GATCTCTGCAACAAAGTTCTAAGAACCAATCAAATTAAAGCATGCAACGC
ATATTAAAACCAATCAAGTTAAAGCACTCTACACGCTAAGCCAATCAGAT
GAAAGCACGTTTACCCGTTTACACAACGCTAAACCAATTAAATTTAGATA
TATCACAATATGTAACACAAACTGCCAAATTGTAGAACGTTTCAACTGCA
CGTTTTGCATGATTTATGCTAACAAACTCCCGAATCCACATATACCCATC
ATGACCTTTCCACGCATACATACATTGCTATTGATATGATAAGTCCAATA
cacgtatttttataagaacatccaaaatttttgaagtcttcggatatttt
cttaactttctgagttttaagcctaaaaatgttcttaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007993-exon-sc0000081-1491911889:341176..341455 | TCONS_00007993-exon-sc0000081-1491911889:341176..341455 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1510915933:341176..341455 | TCONS_00007993-exon-sc0000081-1510915933:341176..341455 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1575043694:341176..341455 | TCONS_00007993-exon-sc0000081-1575043694:341176..341455 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1491911889:341659..341751 | TCONS_00007993-exon-sc0000081-1491911889:341659..341751 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1510915933:341659..341751 | TCONS_00007993-exon-sc0000081-1510915933:341659..341751 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1575043694:341659..341751 | TCONS_00007993-exon-sc0000081-1575043694:341659..341751 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1491911889:342219..342321 | TCONS_00007993-exon-sc0000081-1491911889:342219..342321 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1510915933:342219..342321 | TCONS_00007993-exon-sc0000081-1510915933:342219..342321 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1575043694:342219..342321 | TCONS_00007993-exon-sc0000081-1575043694:342219..342321 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1491911889:342709..342836 | TCONS_00007993-exon-sc0000081-1491911889:342709..342836 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1510915933:342709..342836 | TCONS_00007993-exon-sc0000081-1510915933:342709..342836 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1575043694:342709..342836 | TCONS_00007993-exon-sc0000081-1575043694:342709..342836 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1491911889:343498..343605 | TCONS_00007993-exon-sc0000081-1491911889:343498..343605 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1510915933:343498..343605 | TCONS_00007993-exon-sc0000081-1510915933:343498..343605 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1575043694:343498..343605 | TCONS_00007993-exon-sc0000081-1575043694:343498..343605 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1491911889:344598..345829 | TCONS_00007993-exon-sc0000081-1491911889:344598..345829 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1510915933:344598..345829 | TCONS_00007993-exon-sc0000081-1510915933:344598..345829 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1575043694:344598..345829 | TCONS_00007993-exon-sc0000081-1575043694:344598..345829 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1491911889:347322..347714 | TCONS_00007993-exon-sc0000081-1491911889:347322..347714 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1510915933:347322..347714 | TCONS_00007993-exon-sc0000081-1510915933:347322..347714 | Clytia hemisphaerica | exon |
TCONS_00007993-exon-sc0000081-1575043694:347322..347714 | TCONS_00007993-exon-sc0000081-1575043694:347322..347714 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000081 | supercontig | sc0000081:341176..347714 + |
Blast
BLAST of TCONS_00007993 vs. Swiss-Prot (Human)
Match: CT2NL (CTTNBP2 N-terminal-like protein OS=Homo sapiens GN=CTTNBP2NL PE=1 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 3.863e-18 Identity = 60/196 (30.61%), Postives = 102/196 (52.04%), Query Frame = 2
Query: 281 LKDLSHDDLIELLCLMEAELQAKDVLLKAVLSSDTGHAL-----------PLSHLLNDVDLAHVDNQAEDKSYLLQGEEEDEVWLGEPSAHLNHVVAYHQVVREQMQTTVQDLQKVHKEVVEKLDEEYHKHAADTAQGDDVTYMLEKERERLQAQIDQEQTKYADLEKERDSLRETLEKERKDYYNAFNELMNDCK 835
L+ LS +L+ L ++E EL+A+D++++A+ + + PL L D + N E + P + L V+ + ++E+M + + + H++V+ L+EE +HA DTA+GDDVTYMLEKERERL Q++ E+++ EKE+ L LE+ER + + L+ +CK
Sbjct: 3 LEKLSKPELLTLFSILEGELEARDLVIEALKAQHRDTFIEERYGKYNISDPLMALQRDFETLKEKNDGEKQPVCTN-----------PLSILKVVMKQCKNMQERMLSQLAAAESRHRKVILDLEEERQRHAQDTAEGDDVTYMLEKERERLTQQLEFEKSQVKKFEKEQKKLSSQLEEERSRHKQLSSMLVLECK 187
The following BLAST results are available for this feature:
|