TCONS_00007980 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007980
Unique NameTCONS_00007980
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007980 ID=TCONS_00007980|Name=TCONS_00007980|organism=Clytia hemisphaerica|type=transcript|length=365bp
AAAACAGAATTACTCAATGGGAATGCAGATTCTACGAGCTCAAGTATCGG
AGATTCGTCTCTAAGAAACGGACATGAACCTTCATTAAACGGAGATAGCC
CTCTTACGAATGGAGTTGAACCTTTGCTTAACGGACACGAGCCTCTGGCT
AACGGACACGTAAATGGGGAAATAAAAGACGATATTTTTGAGAGTTCGAA
CGGTGAGCAAAAGATACAAAACAATCCAATTATAAAGAAAGTCTCGACAG
CCAGAGCGAAAGCCAGTCTTTGGAAAGCTATTCGCAGGGTTTCGTCAAAT
GGCTCCAAAGAGCTTAAGACTGAAGAAATGGTCAGTGAAGATGGAGAGCT
TCTCAATGCTGCTGC
Run BLAST on NCBI

protein sequence of TCONS_00007980-protein

>TCONS_00007980-protein ID=TCONS_00007980-protein|Name=TCONS_00007980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
KTELLNGNADSTSSSIGDSSLRNGHEPSLNGDSPLTNGVEPLLNGHEPLA
NGHVNGEIKDDIFESSNGEQKIQNNPIIKKVSTARAKASLWKAIRRVSSN
GSKELKTEEMVSEDGELLNAA
Run BLAST on NCBI

transcript from alignment at sc0000080:691530..691894

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007980 ID=TCONS_00007980|Name=TCONS_00007980|organism=Clytia hemisphaerica|type=transcript|length=365bp|location=Sequence derived from alignment at sc0000080:691530..691894 (Clytia hemisphaerica)
GCAGCAGCATTGAGAAGCTCTCCATCTTCACTGACCATTTCTTCAGTCTT
AAGCTCTTTGGAGCCATTTGACGAAACCCTGCGAATAGCTTTCCAAAGAC
TGGCTTTCGCTCTGGCTGTCGAGACTTTCTTTATAATTGGATTGTTTTGT
ATCTTTTGCTCACCGTTCGAACTCTCAAAAATATCGTCTTTTATTTCCCC
ATTTACGTGTCCGTTAGCCAGAGGCTCGTGTCCGTTAAGCAAAGGTTCAA
CTCCATTCGTAAGAGGGCTATCTCCGTTTAATGAAGGTTCATGTCCGTTT
CTTAGAGACGAATCTCCGATACTTGAGCTCGTAGAATCTGCATTCCCATT
GAGTAATTCTGTTTT

Coding sequence (CDS) from alignment at sc0000080:691530..691894

>TCONS_00007980 ID=TCONS_00007980|Name=TCONS_00007980|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0000080:691530..691894 (Clytia hemisphaerica)
AGCAGCATTGAGAAGCTCTCCATCTTCACTGACCATTTCTTCAGTCTTAA
GCTCTTTGGAGCCATTTGACGAAACCCTGCGAATAGCTTTCCAAAGACTG
GCTTTCGCTCTGGCTGTCGAGACTTTCTTTATAATTGGATTGTTTTGTAT
CTTTTGCTCACCGTTCGAACTCTCAAAAATATCGTCTTTTATTTCCCCAT
TTACGTGTCCGTTAGCCAGAGGCTCGTGTCCGTTAAGCAAAGGTTCAACT
CCATTCGTAAGAGGGCTATCTCCGTTTAATGAAGGTTCATGTCCGTTTCT
TAGAGACGAATCTCCGATACTTGAGCTCGTAGAATCTGCATTCCCATTGA
GTAATTCTGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004500XLOC_004500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007980-exon-sc0000080-1491911889:691530..691894TCONS_00007980-exon-sc0000080-1491911889:691530..691894Clytia hemisphaericaexon
TCONS_00007980-exon-sc0000080-1510915933:691530..691894TCONS_00007980-exon-sc0000080-1510915933:691530..691894Clytia hemisphaericaexon
TCONS_00007980-exon-sc0000080-1575043694:691530..691894TCONS_00007980-exon-sc0000080-1575043694:691530..691894Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007980-proteinTCONS_00007980-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:691530..691894 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.45352	2.90821	5.26295	5.20084	2.10808	3.08596	4.83858	1.21169	5.74753	6.28302	4.90722	12.8883	5.29246	7.52444	0	2.52978	1.53919	0.965265	0.521514	1.4224	5.61596	5.66587	5.61312	2.32963	4.54356	6.68658
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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