TCONS_00007970 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007970
Unique NameTCONS_00007970
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007970 ID=TCONS_00007970|Name=TCONS_00007970|organism=Clytia hemisphaerica|type=transcript|length=450bp
CATGCTTTAACTTTCTACAAATCGTTGTCATCTATAAAATCAACAAGAAA
ATCCCAAAATCCATGATCTTCATTTTGAATCTATCCTGCTCCGATATGTT
TGTTGGAACAGTCGTAGCTTTGTCCGCCATTTTGAGCATAATTGCACCAC
CTCAAAATGAAGGTCTCTTTTTTCATACTTTGAGATATTGTGGAAATCGG
ATTGCACTTGTGATATCATTGGTAAGTTTAGTGGTCATTTCTTTCGATCG
CTTATTCAGTGTTTTGTATCCATTCAAATATCGACTCATACATCGGAGAA
GGttcattattttgattattATCATTTGGAGTATATCAATAGCTTTGCCT
TTAACAATCTGGTTTGTTTTATctgaaaatgatgatgatgattcaAAAGA
TCCCTTTAGGAGCAGCAGTATTTTATTTCCTATACTAACAATTGTGGTAA
Run BLAST on NCBI

protein sequence of TCONS_00007970-protein

>TCONS_00007970-protein ID=TCONS_00007970-protein|Name=TCONS_00007970-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
CFNFLQIVVIYKINKKIPKSMIFILNLSCSDMFVGTVVALSAILSIIAPP
QNEGLFFHTLRYCGNRIALVISLVSLVVISFDRLFSVLYPFKYRLIHRRR
FIILIIIIWSISIALPLTIWFVLSENDDDDSKDPFRSSSILFPILTIVV
Run BLAST on NCBI

transcript from alignment at sc0000080:302849..303298

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007970 ID=TCONS_00007970|Name=TCONS_00007970|organism=Clytia hemisphaerica|type=transcript|length=450bp|location=Sequence derived from alignment at sc0000080:302849..303298 (Clytia hemisphaerica)
TTACCACAATTGTTAGTATAGGAAATAAAATACTGCTGCTCCTAAAGGGA
TCTTTtgaatcatcatcatcattttcagATAAAACAAACCAGATTGTTAA
AGGCAAAGCTATTGATATACTCCAAATGATaataatcaaaataatgaaCC
TTCTCCGATGTATGAGTCGATATTTGAATGGATACAAAACACTGAATAAG
CGATCGAAAGAAATGACCACTAAACTTACCAATGATATCACAAGTGCAAT
CCGATTTCCACAATATCTCAAAGTATGAAAAAAGAGACCTTCATTTTGAG
GTGGTGCAATTATGCTCAAAATGGCGGACAAAGCTACGACTGTTCCAACA
AACATATCGGAGCAGGATAGATTCAAAATGAAGATCATGGATTTTGGGAT
TTTCTTGTTGATTTTATAGATGACAACGATTTGTAGAAAGTTAAAGCATG

Coding sequence (CDS) from alignment at sc0000080:302849..303298

>TCONS_00007970 ID=TCONS_00007970|Name=TCONS_00007970|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at sc0000080:302849..303298 (Clytia hemisphaerica)
TACCACAATTGTTAGTATAGGAAATAAAATACTGCTGCTCCTAAAGGGAT
CTTTtgaatcatcatcatcattttcagATAAAACAAACCAGATTGTTAAA
GGCAAAGCTATTGATATACTCCAAATGATaataatcaaaataatgaaCCT
TCTCCGATGTATGAGTCGATATTTGAATGGATACAAAACACTGAATAAGC
GATCGAAAGAAATGACCACTAAACTTACCAATGATATCACAAGTGCAATC
CGATTTCCACAATATCTCAAAGTATGAAAAAAGAGACCTTCATTTTGAGG
TGGTGCAATTATGCTCAAAATGGCGGACAAAGCTACGACTGTTCCAACAA
ACATATCGGAGCAGGATAGATTCAAAATGAAGATCATGGATTTTGGGATT
TTCTTGTTGATTTTATAGATGACAACGATTTGTAGAAAGTTAAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004490XLOC_004490Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007970-proteinTCONS_00007970-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007970-exon-sc0000080-1491911889:302849..303298TCONS_00007970-exon-sc0000080-1491911889:302849..303298Clytia hemisphaericaexon
TCONS_00007970-exon-sc0000080-1510915933:302849..303298TCONS_00007970-exon-sc0000080-1510915933:302849..303298Clytia hemisphaericaexon
TCONS_00007970-exon-sc0000080-1575043694:302849..303298TCONS_00007970-exon-sc0000080-1575043694:302849..303298Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:302849..303298 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.587431	1.22011	0	0	0.11051	0.11327	3.9122	2.4563	0.426995	0.208273	0.337577	0.153453	0	0	0	0	0.163392	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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