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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007964 ID=TCONS_00007964|Name=TCONS_00007964|organism=Clytia hemisphaerica|type=transcript|length=1504bp
ATTTTTGAGTGTTGTGGATCCAGAAAACTGAACAAAGATTTGAACATAAA
AACGACGATGAAGTTCGAGTTAGCACTGGTTAGCATGAAATACCTTGTTT
TTTATAATATGACTTTCTTTAAACTACAAATTTacatttacatattttta
aattggcTTCCTATATAGCTAAGGAAGCTCGGCATATGGtaaattctttt
taataaacGAAAAAAACATCTATCGCATCTGTTCAAACTCATGAAAACCG
ACTCGTCTGGCTTCTCTATATTTTTCTATAACATCATTTCAATGaagaat
tttttgataaaaacaggGCGTGtaaaagatgcgtttttttcaTTAAGTTC
TAGTAGACTTTTAcatcttgaaaacaaaaacaacaaattaaaatgCTCAA
ATTGCCGTAGTATTTGTTTTTCTCTATTAAATTCAATTATCATCATAAAT
ATAATAGTACCAAGTGTATTCTTCATATATAAcataagaaattaaaaaaa
ggacaaaaatgACACCCCGTAAATATTCCCCTTCAGATTCCTTGAAACAG
TTCTACATCCCTGAATCTAaggacgtcatcataaaggggAACATTCCGCT
AATTCGTATATCGCAAATTGCTAAAAATAACACTAATTTTCTCCTATCTT
ACTTTTTTTTGGTCTATCCTCAAAATTAATAAGAGAAAAAAACGTGAATG
GTGAATTTTATAATTAGttgaaataatcttttaaaaacGTTCCAAGTCAT
GGACGGTCCACCACCCCATGGCTTGTCACGTCaagtaattaaaaatgttt
ttctcacatcTGATTTTCGATGAATATTAACTGCAGTTATATATATACTT
TTTCATTCGATTCTTGGTTCCTTTGTCTAAGGTGATATTTAGTGCCAACA
TTCTGATACTAAAACTCTCCGCGTATCGCTCCACGACGAGAAAAAGAAGC
CAACTCATAGGTAATAAATTAGTAGAGAGAGGTAAAGAGAAGGTAGAATG
CAGCGAGTGCAGTACATAGGATCATATCTTCGGTAGTTGAAGTTCTTCCT
ACATTTCTGGTGATGCTACCGTGACGAGTTGGGCTGGCATGAAGTTGGCA
ATATTTTCTCTCTTATTCACATGTTTTCAAATTCATTCAGATGGACTTTA
CAGCATTTAAACTACACTAAAACAAACCACAATCTTTGAGGTTGTTCTTA
ATGATGACATCCGTTACAGCATCAAAGACGAACTGAATGTTATTTGTATC
TGTGGCACACGTAAAATGCGTGTAAATTTCCTTTTCACCTTTTCGgctgt
tcaaattttcaaactgtAATTGGATGTAAGAACCGGCCTCATCGTAAGTG
TTTGCACCTGAAAAGAAATACAGCGAGAATAATATAATTAACATGTTATG
TGTAATCTACAAACTTAAAGACAGTTATGCTCCAGAATAGCTGTCAAAGA
GACATAATGtacaattttattgaaattaaaGAATAATGTCAATATAGCTC
AAAT Run BLAST on NCBI transcript from alignment at sc0000080:46219..47722 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007964 ID=TCONS_00007964|Name=TCONS_00007964|organism=Clytia hemisphaerica|type=transcript|length=1504bp|location=Sequence derived from alignment at sc0000080:46219..47722 (Clytia hemisphaerica)
ATTTGAGCTATATTGACATTATTCtttaatttcaataaaattgtaCATTA
TGTCTCTTTGACAGCTATTCTGGAGCATAACTGTCTTTAAGTTTGTAGAT
TACACATAACATGTTAATTATATTATTCTCGCTGTATTTCTTTTCAGGTG
CAAACACTTACGATGAGGCCGGTTCTTACATCCAATTacagtttgaaaat
ttgaacagcCGAAAAGGTGAAAAGGAAATTTACACGCATTTTACGTGTGC
CACAGATACAAATAACATTCAGTTCGTCTTTGATGCTGTAACGGATGTCA
TCATTAAGAACAACCTCAAAGATTGTGGTTTGTTTTAGTGTAGTTTAAAT
GCTGTAAAGTCCATCTGAATGAATTTGAAAACATGTGAATAAGAGAGAAA
ATATTGCCAACTTCATGCCAGCCCAACTCGTCACGGTAGCATCACCAGAA
ATGTAGGAAGAACTTCAACTACCGAAGATATGATCCTATGTACTGCACTC
GCTGCATTCTACCTTCTCTTTACCTCTCTCTACTAATTTATTACCTATGA
GTTGGCTTCTTTTTCTCGTCGTGGAGCGATACGCGGAGAGTTTTAGTATC
AGAATGTTGGCACTAAATATCACCTTAGACAAAGGAACCAAGAATCGAAT
GAAAAAGTATATATATAACTGCAGTTAATATTCATCGAAAATCAgatgtg
agaaaaacatttttaattacttGACGTGACAAGCCATGGGGTGGTGGACC
GTCCATGACTTGGAACgtttttaaaagattatttcaaCTAATTATAAAAT
TCACCATTCACGTTTTTTTCTCTTATTAATTTTGAGGATAGACCAAAAAA
AAGTAAGATAGGAGAAAATTAGTGTTATTTTTAGCAATTTGCGATATACG
AATTAGCGGAATGTTcccctttatgatgacgtcctTAGATTCAGGGATGT
AGAACTGTTTCAAGGAATCTGAAGGGGAATATTTACGGGGTGTcattttt
gtcctttttttaatttcttatgTTATATATGAAGAATACACTTGGTACTA
TTATATTTATGATGATAATTGAATTTAATAGAGAAAAACAAATACTACGG
CAATTTGAGcattttaatttgttgtttttgttttcaagatgTAAAAGTCT
ACTAGAACTTAAtgaaaaaaacgcatcttttaCACGCcctgtttttatca
aaaaattcttCATTGAAATGATGTTATAGAAAAATATAGAGAAGCCAGAC
GAGTCGGTTTTCATGAGTTTGAACAGATGCGATAGATGTTTTTTTCgttt
attaaaaagaatttaCCATATGCCGAGCTTCCTTAGCTATATAGGAAgcc
aatttaaaaatatgtaaatgtAAATTTGTAGTTTAAAGAAAGTCATATTA
TAAAAAACAAGGTATTTCATGCTAACCAGTGCTAACTCGAACTTCATCGT
CGTTTTTATGTTCAAATCTTTGTTCAGTTTTCTGGATCCACAACACTCAA
AAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007964-exon-sc0000080-1491911889:46219..47722 | TCONS_00007964-exon-sc0000080-1491911889:46219..47722 | Clytia hemisphaerica | exon |
| TCONS_00007964-exon-sc0000080-1510915933:46219..47722 | TCONS_00007964-exon-sc0000080-1510915933:46219..47722 | Clytia hemisphaerica | exon |
| TCONS_00007964-exon-sc0000080-1575043694:46219..47722 | TCONS_00007964-exon-sc0000080-1575043694:46219..47722 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:46219..47722 . |
Blast
BLAST of TCONS_00007964 vs. Swiss-Prot (Human)
Match: GNAI2 (Guanine nucleotide-binding protein G(i) subunit alpha-2 OS=Homo sapiens GN=GNAI2 PE=1 SV=3) HSP 1 Score: 123.635 bits (309), Expect = 4.417e-31 Identity = 60/79 (75.95%), Postives = 65/79 (82.28%), Query Frame = -3
Query: 1170 ITHNMLIILFSLYFFSGANTYDEAGSYIQLQFENLNSRKGEKEIYTHFTCATDTNNIQFVFDAVTDVIIKNNLKDCGLF 1406
ITH+ L I F Y +GAN YDEA SYIQ +FE+LN RK KEIYTHFTCATDT N+QFVFDAVTDVIIKNNLKDCGLF
Sbjct: 279 ITHSPLTICFPEY--TGANKYDEAASYIQSKFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 355
The following BLAST results are available for this feature:
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