TCONS_00007931 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007931
Unique NameTCONS_00007931
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1712

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007931 ID=TCONS_00007931|Name=TCONS_00007931|organism=Clytia hemisphaerica|type=transcript|length=1712bp
AAGGCTCACAGTTCCCCGGTATTATGGTGGCATTGGAAGACTCCAACACA
GTCAGGTATTAAACAATACAAGCAAGTCTTCTTCAGTAATTCGAATGCTA
ACATTCTGTCTTAATGCTCCTCAGGCAACAGTCCGTCCAACAGTAACCAC
ACATCGCCAAAACACAGTTcatatgaagaaaaagaaagcaagaGTAAAAA
ATCCAAGAAAGATTCTTCCTCTGGTGGCATTACGTCATATTTGAAGAAGA
TGATTGGTGGCGCCCGCGAACACTCAGACCCAGACTCTCCAACACAAACC
AACGGCAACTCCATGTTTTACTACGACAATTTGAGCAGTTTGAGGAACAG
CAAAAAACCATCTTTACCTCGACCAAAAGAATTAGAACGCACTACTTCCT
CACCTTCTGTCGGTGGCTTCTCAAGCAACCTGTCTCCTGAAGTTCCTGAA
TTTGTTCCCGCCTCCCAACGAATCAATAAAGCACCCGGATCAAACGTCAA
GAAAGATAATTCTTGGGCGTCAGTTGATGATTCCGCCCTCGAATATCTCC
GCCCTCCACCTGGTTTATCGAAACCTGCTTCCACTAAAAGTACACAAAGC
ATTTGGGGTCTTGAAAACCCTCGAACTTCAACTGCAGATTCGTGGACAAA
ATCCTCACTCTTCTCTGATTTGAAAACTGACTCATACAGCGCCTTACTTG
GAAATACAAGCCCAAGAGCTCCTAAATCAACTTCGTTTGGCAGCTTGTTG
ACGGGATCACGTGATGAAAGAGATGGTGGAGATATCTGGAAATCTGACCT
CCTTGATAAGGACTTGTTTGGATCTTCGACCTCTCTTGGACGTTCATCAA
TTTGGGATGCACCTGATATTCCGACGTCCTCCTCTGGAAGTCTTTCAGCA
AGAGGACGTCTCGGTCTTGGTCTCGATCTGAACCCGGTCAGTGAAGTTGG
TAATTCCACCGATAGTCCACTAGATGCGTTCAGTATCTGGGCTTCCAATG
CGTCCAATGAATCTGGTCCTTACTCAGGATGGAATAAAGATCTCAAAGAT
GATTGAGTTAGTCGAATGAGTGCGTGTGAAATATGAGTTCTGAAACATCG
AGTGGATTTTAACCAGACACCATCTTCTTtttggttcttttaaaagatta
tttaGTTGAGTTGAGTTTCTTCAAAACACAGTTGGTTTTTACtagttttt
tatactttttgtttatattttttactaGTACAGCATCAATTTCTTTTTGG
AGTATGGTTATTACTCTGGAAAGAGTTTTTGTGCACTTCGGTATGGCCCG
TTTTATCCAGTTCATTTAGCCATCATTTGAAAGAACATTCTTCATTCTCT
TCAAATGATTtgtgttcttttgttttagacATGTTTATATTTTATACAGT
TCCTTTCATTagtattttttcattccatttttTGACCCAGAAATCACTAC
TCCACAATAAACTCGGCCGGACTgaaattttttgcttgtttgTGCGTGac
atttttgttgtatttttcttcttttttttacatttgtaTTTTAGAGAGAG
AGCGACTGTGGATATTTTTACCAAAAGATCTTTAAAGTTGGTCGCCCCAA
AATCTATATTGTAGTTAGCGTTTGATTAAGGAATATTTTAACAGCGCTAT
TTATTTGAAGTTGCAAGTTGtgattatgaaaaataaaagaattttgacgt
tttaaAATGAAC
Run BLAST on NCBI

protein sequence of TCONS_00007931-protein

>TCONS_00007931-protein ID=TCONS_00007931-protein|Name=TCONS_00007931-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MIGGAREHSDPDSPTQTNGNSMFYYDNLSSLRNSKKPSLPRPKELERTTS
SPSVGGFSSNLSPEVPEFVPASQRINKAPGSNVKKDNSWASVDDSALEYL
RPPPGLSKPASTKSTQSIWGLENPRTSTADSWTKSSLFSDLKTDSYSALL
GNTSPRAPKSTSFGSLLTGSRDERDGGDIWKSDLLDKDLFGSSTSLGRSS
IWDAPDIPTSSSGSLSARGRLGLGLDLNPVSEVGNSTDSPLDAFSIWASN
ASNESGPYSGWNKDLKDD
Run BLAST on NCBI

transcript from alignment at sc0000080:558918..561290-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007931 ID=TCONS_00007931|Name=TCONS_00007931|organism=Clytia hemisphaerica|type=transcript|length=2373bp|location=Sequence derived from alignment at sc0000080:558918..561290- (Clytia hemisphaerica)
AAGGCTCACAGTTCCCCGGTATTATGGTGGCATTGGAAGACTCCAACACA
GTCAGGTATTAAACAATACAAGCAAGTCTTCTTCAGTAATTCGAATGCTA
ACATTCTGTCTTAATGCTCCTCAGGCAACAGTCCGTCCAACAGTAACCAC
ACATCGCCAAAACACAGTTCATATGAAGAAAAAGAAAGCAAGAGTAAAAA
ATCCAAGAAAGATTCTTCCTCTGGTGGCATTACGTCATATTTGAAGAAGA
TGATTGGTGGCGCCCGCGAACACTCAGACCCAGACTCTCCAACACAAACC
AACGGCAACTCCATGTTTTACTACGACAATTTGAGCAGTTTGAGGAACAG
CAAAAAACCATCTTTACCTCGACCAAAAGAATTAGAACGCACTACTTCCT
CACCTTCTGTCGGTGGCTTCTCAAGCAACCTGTCTCCTGAAGTTCCTGAA
TTTGTTCCCGCCTCCCAACGAATCAATAAAGCACCCGGATCAAACGTCAA
GAAAGATAATTCTTGGGCGTCAGTTGATGATTCCGCCCTCGAATATCTCC
GCCCTCCACCTGGTTTATCGAAACCTGCTTCCACTAAAAGTACACAAAGC
ATTTGGGGTCTTGAAAACCCTCGAACTTCAACTGCAGATTCGTGGACAAA
ATCCTCACTCTTCTCTGATTTGAAAACTGACTCATACAGCGCCTTACTTG
GAAATACAAGCCCAAGAGCTCCTAAATCAACTGTAAGTTTTACCAAACAT
TTAATTTGTGGGATAGCCCATTATACAACATATGTTTCTAGTTTATGCAT
CTTCAAAATTGAAATTCTAAAATCAGCTTCTGTGCGTCAAATTTAAAGGG
GGTCTAGTAATGGTCGAAAAAATACACAGTACTAACTACAGGTAAAAACA
TCAGGATGGTAATATTTTGGCTTTGATCAATCAGCAATTACAAGTTAAAA
GAAATTGTGAAATTTTCCTTTGACTAGAAGATCAATAAGTGCAAAGTCAA
GAACCTTTTTAGATTATCAACGTGTTTCTATAACCAATTATTTTGTTGAC
TTCTTCAGTCGTTTGGCAGCTTGTTGACGGGATCACGTGATGAAAGAGAT
GGTGGAGATATCTGGAAATCTGACCTCCTTGATAAGGTAAACTATTTCTC
TATTTTAGTATCTGTGCTGTTGATTTGGGTTGAGCAAGCTAACCATTATA
AACATAATCTTCCTTTTTCTTGAAGACTGCGACACTGCGATCTACTGATA
TTCTTTCTGTATATTTGTACATACAAATAAAAAATCATCATCGCTCGACC
ACCGTCGAAATAAAATACTTAATAAACTGACCAAGTGGTAAATTTAATGA
GTGCTACAAGATACCTTAATACCTAGCGATATCTGCAAAAGCTTGAAGCA
GCGTACCAAAGCTTTGAAAGCCTACCTCTCTTGAAAACTAGATTCTCATC
AAAACTCTTTTGTGATTGCAGGACTTGTTTGGATCTTCGACCTCTCTTGG
ACGTTCATCAATTTGGGATGCACCTGATATTCCGACGTCCTCCTCTGGAA
GTCTTTCAGCAAGAGGACGTCTCGGTCTTGGTCTCGATCTGAACCCGGTC
AGTGAAGTTGGTAATTCCACCGATAGTCCACTAGATGCGTTCAGTATCTG
GGCTTCCAATGCGTCCAATGAATCTGGTCCTTACTCAGGATGGAATAAAG
ATCTCAAAGATGATTGAGTTAGTCGAATGAGTGCGTGTGAAATATGAGTT
CTGAAACATCGAGTGGATTTTAACCAGACACCATCTTCTTTTTGGTTCTT
TTAAAAGATTATTTAGTTGAGTTGAGTTTCTTCAAAACACAGTTGGTTTT
TACTAGTTTTTTATACTTTTTGTTTATATTTTTTACTAGTACAGCATCAA
TTTCTTTTTGGAGTATGGTTATTACTCTGGAAAGAGTTTTTGTGCACTTC
GGTATGGCCCGTTTTATCCAGTTCATTTAGCCATCATTTGAAAGAACATT
CTTCATTCTCTTCAAATGATTTGTGTTCTTTTGTTTTAGACATGTTTATA
TTTTATACAGTTCCTTTCATTAGTATTTTTTCATTCCATTTTTTGACCCA
GAAATCACTACTCCACAATAAACTCGGCCGGACTGAAATTTTTTGCTTGT
TTGTGCGTGACATTTTTGTTGTATTTTTCTTCTTTTTTTTACATTTGTAT
TTTAGAGAGAGAGCGACTGTGGATATTTTTACCAAAAGATCTTTAAAGTT
GGTCGCCCCAAAATCTATATTGTAGTTAGCGTTTGATTAAGGAATATTTT
AACAGCGCTATTTATTTGAAGTTGCAAGTTGTGATTATGAAAAATAAAAG
AATTTTGACGTTTTAAAATGAAC

Coding sequence (CDS) from alignment at sc0000080:558918..561290-

>TCONS_00007931 ID=TCONS_00007931|Name=TCONS_00007931|organism=Clytia hemisphaerica|type=CDS|length=2421bp|location=Sequence derived from alignment at sc0000080:558918..561290- (Clytia hemisphaerica)
GACTTGTTTGGATCTTCGACCTCTCTTGGACGTTCATCAATTTGGGATGC
ACCTGATATTCCGACGTCCTCCTCTGGAAGTCTTTCAGCAAGAGGACGTC
TCGGTCTTGGTCTCGATCTGAACCCGGTCAGTGAAGTTGGTAATTCCACC
GATAGTCCACTAGATGCGTTCAGTATCTGGGCTTCCAATGCGTCCAATGA
ATCTGGTCCTTACTCAGGATGGAATAAAGATCTCAAAGATGATTGATCGT
TTGGCAGCTTGTTGACGGGATCACGTGATGAAAGAGATGGTGGAGATATC
TGGAAATCTGACCTCCTTGATAAGATGATTGGTGGCGCCCGCGAACACTC
AGACCCAGACTCTCCAACACAAACCAACGGCAACTCCATGTTTTACTACG
ACAATTTGAGCAGTTTGAGGAACAGCAAAAAACCATCTTTACCTCGACCA
AAAGAATTAGAACGCACTACTTCCTCACCTTCTGTCGGTGGCTTCTCAAG
CAACCTGTCTCCTGAAGTTCCTGAATTTGTTCCCGCCTCCCAACGAATCA
ATAAAGCACCCGGATCAAACGTCAAGAAAGATAATTCTTGGGCGTCAGTT
GATGATTCCGCCCTCGAATATCTCCGCCCTCCACCTGGTTTATCGAAACC
TGCTTCCACTAAAAGTACACAAAGCATTTGGGGTCTTGAAAACCCTCGAA
CTTCAACTGCAGATTCGTGGACAAAATCCTCACTCTTCTCTGATTTGAAA
ACTGACTCATACAGCGCCTTACTTGGAAATACAAGCCCAAGAGCTCCTAA
ATCAACTGACTTGTTTGGATCTTCGACCTCTCTTGGACGTTCATCAATTT
GGGATGCACCTGATATTCCGACGTCCTCCTCTGGAAGTCTTTCAGCAAGA
GGACGTCTCGGTCTTGGTCTCGATCTGAACCCGGTCAGTGAAGTTGGTAA
TTCCACCGATAGTCCACTAGATGCGTTCAGTATCTGGGCTTCCAATGCGT
CCAATGAATCTGGTCCTTACTCAGGATGGAATAAAGATCTCAAAGATGAT
TGATCGTTTGGCAGCTTGTTGACGGGATCACGTGATGAAAGAGATGGTGG
AGATATCTGGAAATCTGACCTCCTTGATAAGATGATTGGTGGCGCCCGCG
AACACTCAGACCCAGACTCTCCAACACAAACCAACGGCAACTCCATGTTT
TACTACGACAATTTGAGCAGTTTGAGGAACAGCAAAAAACCATCTTTACC
TCGACCAAAAGAATTAGAACGCACTACTTCCTCACCTTCTGTCGGTGGCT
TCTCAAGCAACCTGTCTCCTGAAGTTCCTGAATTTGTTCCCGCCTCCCAA
CGAATCAATAAAGCACCCGGATCAAACGTCAAGAAAGATAATTCTTGGGC
GTCAGTTGATGATTCCGCCCTCGAATATCTCCGCCCTCCACCTGGTTTAT
CGAAACCTGCTTCCACTAAAAGTACACAAAGCATTTGGGGTCTTGAAAAC
CCTCGAACTTCAACTGCAGATTCGTGGACAAAATCCTCACTCTTCTCTGA
TTTGAAAACTGACTCATACAGCGCCTTACTTGGAAATACAAGCCCAAGAG
CTCCTAAATCAACTGACTTGTTTGGATCTTCGACCTCTCTTGGACGTTCA
TCAATTTGGGATGCACCTGATATTCCGACGTCCTCCTCTGGAAGTCTTTC
AGCAAGAGGACGTCTCGGTCTTGGTCTCGATCTGAACCCGGTCAGTGAAG
TTGGTAATTCCACCGATAGTCCACTAGATGCGTTCAGTATCTGGGCTTCC
AATGCGTCCAATGAATCTGGTCCTTACTCAGGATGGAATAAAGATCTCAA
AGATGATTGATCGTTTGGCAGCTTGTTGACGGGATCACGTGATGAAAGAG
ATGGTGGAGATATCTGGAAATCTGACCTCCTTGATAAGATGATTGGTGGC
GCCCGCGAACACTCAGACCCAGACTCTCCAACACAAACCAACGGCAACTC
CATGTTTTACTACGACAATTTGAGCAGTTTGAGGAACAGCAAAAAACCAT
CTTTACCTCGACCAAAAGAATTAGAACGCACTACTTCCTCACCTTCTGTC
GGTGGCTTCTCAAGCAACCTGTCTCCTGAAGTTCCTGAATTTGTTCCCGC
CTCCCAACGAATCAATAAAGCACCCGGATCAAACGTCAAGAAAGATAATT
CTTGGGCGTCAGTTGATGATTCCGCCCTCGAATATCTCCGCCCTCCACCT
GGTTTATCGAAACCTGCTTCCACTAAAAGTACACAAAGCATTTGGGGTCT
TGAAAACCCTCGAACTTCAACTGCAGATTCGTGGACAAAATCCTCACTCT
TCTCTGATTTGAAAACTGACTCATACAGCGCCTTACTTGGAAATACAAGC
CCAAGAGCTCCTAAATCAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004474XLOC_004474Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007931-proteinTCONS_00007931-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007931-exon-sc0000080-1575043694:560559..561290TCONS_00007931-exon-sc0000080-1575043694:560559..561290Clytia hemisphaericaexon
TCONS_00007931-exon-sc0000080-1575043694:560155..560232TCONS_00007931-exon-sc0000080-1575043694:560155..560232Clytia hemisphaericaexon
TCONS_00007931-exon-sc0000080-1575043694:558918..559819TCONS_00007931-exon-sc0000080-1575043694:558918..559819Clytia hemisphaericaexon
TCONS_00007931-exon-sc0000080-1510915933:560559..561290TCONS_00007931-exon-sc0000080-1510915933:560559..561290Clytia hemisphaericaexon
TCONS_00007931-exon-sc0000080-1510915933:560155..560232TCONS_00007931-exon-sc0000080-1510915933:560155..560232Clytia hemisphaericaexon
TCONS_00007931-exon-sc0000080-1510915933:558918..559819TCONS_00007931-exon-sc0000080-1510915933:558918..559819Clytia hemisphaericaexon
TCONS_00007931-exon-sc0000080-1491911889:560559..561290TCONS_00007931-exon-sc0000080-1491911889:560559..561290Clytia hemisphaericaexon
TCONS_00007931-exon-sc0000080-1491911889:560155..560232TCONS_00007931-exon-sc0000080-1491911889:560155..560232Clytia hemisphaericaexon
TCONS_00007931-exon-sc0000080-1491911889:558918..559819TCONS_00007931-exon-sc0000080-1491911889:558918..559819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:558918..561290 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
54.8571	43.5965	251.201	282.002	46.4431	33.0275	34.323	38.6673	31.2888	43.6839	37.9286	34.3022	72.7791	76.9839	47.3545	54.0982	52.5749	64.7305	58.3645	70.7894	69.5395	67.5596	42.9515	48.67	46.5809	50.2577	86.9691	87.0472	91.1473	92.1974
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top