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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007917 ID=TCONS_00007917|Name=TCONS_00007917|organism=Clytia hemisphaerica|type=transcript|length=1187bp ataaagaagaacagTTGAGGTGACAGTGACAGGAATTCCACAGTGACAGG GCAGCAGTGCTGACAGCTTAACAGTTAGCTGTTAATCAATCAGTAGTAAC AAGACTAGTAGGGAATATTGCAGAAAAATGAGCAATTACATGAACTATTC TGAAGCTTCAAAGCTTTATGATGAAGCACGAGTTGCAGCAGATGCTGAAA ACATTTACAACATTTTCACTGGGCTTCTCAAGAAACCAGCAAACAAAatc gaTCTTTTGGATATTGGATGTGGTACAGGCAACTACAGTTATTCTTTCAT GAAAAATGGTTTACAAAGCATTACCATTGCTGATGCTTCTCAGGAGATGT TAGACTgtgccaaaatcaaaatgaaagtaTTTGAAGATAAAGTCACTGCA CAAGATATCATTTTACCAAACTTACCATTTCCTGAGAAAAGCTTTGATGT TATTTCTTGCATGCAGGTTTTACACCATATTGATTCTGCTGCTTTAAAAG AATCAACCAAGGAACATCTTCAACGGGAAGACTATCCAAACATGCTTGAA ACCTTGAGTCAAGCTTACGATGTTTTAAAACCTGGTGGGGTACTAGTTAT TGATGTTATGTTTGAAGAAAATTGTGAAAGCTTTTGGTGGACCAGATTAT GTCCAATAGCTGCTAAGGCGTTCAAAAGACTAAGAATGAGCCAAAAGGAC ATGATTCAGTCCTTAGAGAAACTTAATTTTGAGAATATTGTTTGCACATA CTTTCCAGGCTCTCGCTTAGTTAAAAAGGAGATTTATGATGAAATTCAAT GTATAGATGATCCTAAATGGAGATATTATCTTTCTCAGTACAAATTGGTT GAAAAGTCTGGTGAATTAGATAACCTAATTAAAATTGTAAAAGACGCAGA GACTTCTGGAAAACTGAAAGAGTATTTTGACGATTGGAGTGAAAAGCTCT GGACACATGGGAATCATAGTGCTGTTTTTGCAATGAAGCCTTTAGCAtag atttttgtttaatttttattaagtttgatttttcataaatttttcaattg CTGGTAAAAGACTTATTTATAAATTATTAACTACGGTGAGGGCTAGAAGG TTTATAAAGGTTTTTATAcgtttagaattttttataaagGTCATTTAAAT ACATACACATGTTTTTTCTGGGAAAAATCAATGTATC Run BLAST on NCBI protein sequence of TCONS_00007917-protein >TCONS_00007917-protein ID=TCONS_00007917-protein|Name=TCONS_00007917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MSNYMNYSEASKLYDEARVAADAENIYNIFTGLLKKPANKIDLLDIGCGT GNYSYSFMKNGLQSITIADASQEMLDCAKIKMKVFEDKVTAQDIILPNLP FPEKSFDVISCMQVLHHIDSAALKESTKEHLQREDYPNMLETLSQAYDVL KPGGVLVIDVMFEENCESFWWTRLCPIAAKAFKRLRMSQKDMIQSLEKLN FENIVCTYFPGSRLVKKEIYDEIQCIDDPKWRYYLSQYKLVEKSGELDNL IKIVKDAETSGKLKEYFDDWSEKLWTHGNHSAVFAMKPLA Run BLAST on NCBI transcript from alignment at sc0000080:432745..438179- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007917 ID=TCONS_00007917|Name=TCONS_00007917|organism=Clytia hemisphaerica|type=transcript|length=5435bp|location=Sequence derived from alignment at sc0000080:432745..438179- (Clytia hemisphaerica) ATAAAGAAGAACAGTTGAGGTGACAGTGACAGGAATTCCACAGTGACAGG
GCAGCAGTGCTGACAGCTTAACAGTTAGCTGTTAATCAATCAGTAGTAAC
AAGACTAGTAGGGGTAAGTCGGAAAATCTGTATTTAGTTACTCCTTTGGA
TTTTACTAGTTTTTCTGAAGAGTATAAGCTATACTTACCTCCTTACCTAT
CCAGCAGACTTTTATCCCTCGTAACAAATCTATCTATTACTATGGCACGA
AATGCTACTCTAGGGATCCTGCGACTGTGATGATCTGATTTGTCCCTTAT
TCAGTTCAGCCAAAACATTTAAAACCTTGAAACTCAAGTTCATGATTTAA
TCGGGAATAAAATATAATTAAAAAATATAATAAAATCCAATTCCTCACAC
TCTTTCAGCCATCTTTACCACATATTTTTTTGTTCTTGTTATTATTATTT
TTCTTATTTACATACTCAAGTTATTTGATTCAGTCGCATTTAATTTTATA
TCTTACTTATACGAAAGTTCTGGGAACAGCAGTCTGTTCCTCTAAAGAAT
CCTGCATTGTAACATGCATGCATAATTTGTCATTCTTAAACCATATGCAG
TTAATTCCATGATGATAAACAAAGAGGAATGAACAGTGGTACAGTTGTTA
CTTTTGGTCAGGGTTGTGGACGGCAAAATTTGTCGTTCTTTATGAAATTT
GTCGTTCTCTTTGTCTATTTTTAGTATATAATCCAGGATTCTTTAGATAA
ACCCCCTCACAACTCAGAGGACAAAAACCTGACAAAACATACGAAAAACT
GTTCAATAGAGTTCAGTTGAAAAAATTTGTGTCTTTTAGAGGATGTTTTG
CCCCTTGGTCCAAATAGGCAGGCTAGCTCTAAAGCTCTAAAACAGCATCT
AATAACATGAAAACTAGAATATTATTCTTCAATGGGAATCAGAACTATAA
AGTGCACTTACAAACATCAATATGTCAGATTTAACAAAATTAATAACGGC
ACTGTCATCATTGACAATAAAACAAACAATTTTCTTTCAAGAGTCTTGTA
AACATTCCAACAACTTCGATCGAAATGATCTGTCACTGCAAGTCTACCAT
TTTTAGCACGGTCCGAGGATTGAGCCGAGAATGCTCGCAGAACACCCACT
AGCTCCCGCGCGGATGATAAACTTTAATCTGTCAATCATTTTCTCAAGCG
AAGAGTACACAAAGAGATTCTAACTTTACGATAGTGCCGCGGATCATCAG
TGGATAGTATTCAATTATCATCATCCCTTTCTTTTCATTCCTAGAACTTT
TACAAAAAAAGGAAAAATAGAAAAGTTTTTTACTGCTTTATTCACATACT
GAATTTGAAAGATCTTGTATACTATGTGGCGTTTTTTTTTGCAAACTTCA
AAAAACTGATTTTTGTCCCGCTTTGGCGTGACTTTAGCTTAAGTGCTTGC
ATACAGCATAGGGTACAAAAGTCCAAATATGCATTTCCCACAATTTTTTT
ATATATGAAGAGTTAGGTCTATACTGATAGGGTTGAGACATGCCATAACT
CTACCAGACTTGCCAACTTGAGATGTTCATACGCTAAAAAGATAAAAAAT
TTCAAGCGAAATCCGAAATCTTAGCCCAGTTTTTCCGACGCCGTCATATA
TTTTGAAAATTGACCTCAGAATTTTTTTTGTTAGAAATTCCGTACTCTTC
AAACGTCAAGTTCCCTTTTTAGACAGGGGTTTTATGGAGNAATTTAATAA
GTGACCCATCAAAATTTAAGTTTATCTTTCTTCTTTTCAATGAAATGGGA
ATGGTTCTTTTAAAAATTTTAGATTTCGAAAATATTAGTTTCAAAGAGAG
AAACTTTTTTGTGGCGCACCCGGTAGTGTTAATTTTCTTGCTCAATTATG
GATGGAAAATAAAATTTTAAACATACAATTAAAACAAAGACGTATATGCA
TTGGTTTTTTGAGTTAAAAAAAAGAGATTTTAGTCTCAATACTGCCATGA
AATCCTTATTTTAAACTCAAATCAACCTCCTGACAAACTATTCAAAATCA
CAGCTGGCCTACAATTTTAGCGTGACAGACACAAAATATGAAATTCTTTT
AGTATATCTAGATTGTAACAAAAAAACTCAATGAAAAATTAAAAATGGCA
AGGCTTAGTCTGAAGAGATGTTTGATCGGCTTTACATTGATTTTATGTTT
TTGGCTTGTATGGAAGGTCAAGTATAAAAATCAAGGATTCATGAAATATC
TACCCAAAGTAAATTTCTCATCTGTTGTCACACCATATGAATATCAAATG
AAAGGGGATTTTCTACCTCCTCACTTACGTAAACAAAAACTTATCCTTTT
CTTCACATCACATTTCTACAGTGACATCTGGAAAGGATTAGGTCCTGATG
TATTACCTGGGTACACCCAAAATGCACATTGTAACATTAAAGAATGTTCA
ATGACTTATGACAAAAAGAGAATAAACGAGGCAGATCTTGTGATATTTCA
TGGTGTAGATTTTGAATATAAGAATTATACTGATAAACATTTCCAAGCAA
TGTTAAAGAAGAAACCATCTCATCAACGATGGGTGTTTTGGATGCATGAG
ACTCCTGTTTACTATCCAGAACCTGGAAATTATGATAATTTATTCAATTG
GACTATGACATTCAGTCAAGGGTCTGATATCTACCACCCATATTACTCTT
ACAGAAGGCTAACTGCTGATGATGACAGACCTGGAAAGTACATGAACTAT
GCTCTTGGAAGAACAAAGAAAATAGCCTGGATGGTAAGTCATTGTGGTAT
GACAAGAGGTGAATATGTTATGGAACTGCAAAAGTATACTGATGTTACTG
TTTATGGTTTGTGTGGGGCATCTTATGATAATATGGCAGGCATATGTTCT
CGTGTTGAAAGTGAGTGTATGGATCAATTGAATCAATATCGATTTTATCT
TGCTTTTGAAAACTCATTTTGTGAAGACTATGTGACAGAAAAGTATTATA
AATTTGGCATAATGTATGGTGCTGTACCAATAGTGATGGGCGCTAGATAC
AATGCATTGAATTCTATACCAGGGTCTTACATTGATGCTTCCACATTTCC
TTCAGTACAAGCTTTAGGAGAATACATTAATTTCCTCAGTGAAAATGATT
ATTATTACAATCAATATTTTGAGTGGAAAAATCACTTCAAAATGGACGAT
GGAATTGATAAGATTTGTTTACTTTGTCATGCAGCCCATGATGTAACTAG
AAAGTCTAGTTTCCATAAACATTTCCATGCTTTTTGGAGCAAACAAGCAA
TGTGTGATCCCTATGAACCTGTCATTCAAAAGTTTGGTCACCAAATTGAA
CAGTCCAAACTTTCTAGAATAGGCGAAGGTACAAAATCATAGACCTATTT
TATAATCAAAACATTATCTTTTTTTTATAACTCTTCCATTTTTACCTTTT
GCACTTTATTTTTTAGATTTAGATTTATTTTTTAATCAATACTAAATTTA
ATAGTTTTATCAAGTAAAATTACACATCTAGAATTTCTGCCTTGTGTCTT
CTTTTTCACTTTGCAGTAGTTTTCTTTAAGGTAGGCAATATTTCCAATTG
GTCTTCTTGATAGTATTGTATTCTTTCCTCTTTAATAGATGAATAGTAAA
GATAATTAAATGGATATTTCAAAAATAAGAAATAGTTTCCAGCTGAAATT
TGGTTTGCATTTTATTTCAAGAACTATAGTAAAAGGTAATACATTTCATT
CAAAAATCATATTGCTTCAACCAGAATGCATTACGCAGCTAATACCTAAA
CTCGTTACACTGGTGGTGAAATGTATAATCTGTAAAAATCATAAAATTGT
TAATAAAAATAGAATGTTTTAAAGAAAGTTACTTGAAACAGAAACCAAAG
ATTCATTCTTACCTATGTATCCTATATACTTATTAAAGAGCTGTGAATTA
ACCATTCAATTGGAGTGTTTACTCTTTTGTTAGTACTGAACACAGTTGAT
GGTCATATTTTCTTTATCAATAGAATATTGCAGAAAAATGAGCAATTACA
TGAACTATTCTGAAGCTTCAAAGCTTTATGATGAAGCACGAGTTGCAGCA
GATGCTGAAAACATTTACAACATTTTCACTGGGCTTCTCAAGAAACCAGC
AAACAAAGTATTTCATTTATCAATGATTTCTTATGTTTGTACATTGAGCC
GGTTTGTTAACAACCTCGTTTCCTGCGTATTATCAGCTTTTTATGATTTT
TTATCAAAGTATTATTTTGCATGAGCCTACACCAGGGCATTCTCTGGCGT
TCATCATTTTTCTTCAAAAACTTTTTAAATAATTCAAAAATAAATATTAT
GGTGTATTTTATTGTAATTTTATTGCAATTTTTCTTTAACTTTTAGATCG
ATCTTTTGGATATTGGATGTGGTACAGGCAACTACAGTTATTCTTTCATG
AAAAATGGTTTACAAAGCATTACCATTGCTGATGCTTCTCAGGAGATGTT
AGACTGTGCCAAAATCAAAATGAAAGTATTTGAAGATAAAGTCACTGCAC
AAGATATCATTTTACCAAACTTACCATTTCCTGAGAAAAGCTTTGATGTT
ATTTCTTGCATGCAGGTTTTACACCATATTGATTCTGCTGCTTTAAAAGA
ATCAACCAAGGAACATCTTCAACGGGAAGACTATCCAAACATGCTTGAAA
CCTTGAGTCAAGCTTACGATGTTTTAAAACCTGGTGGGGTACTAGTTATT
GATGTTATGTTTGAAGAAAATTGTGAAAGCTTTTGGTGGACCAGATTATG
TCCAATAGCTGCTAAGGCGTTCAAAAGACTAAGAATGAGCCAAAAGGACA
TGATTCAGTCCTTAGAAAAACTTAATTTCANTTGGTGGACCAGATTATGT
CCAATAGCTGCTAAGGCGTTCAAAAGACTAAGAATGAGCCAAAAGGACAT
GATTCAGTCCTTAGAGAAACTTAATTTTGAGAATATTGTTTGCACATACT
TTCCAGGCTCTCGCTTAGTTAAAAAGGAGATTTATGATGAAATTCAATGT
ATAGATGATCCTAAATGGAGATATTATCTTTCTCAGTACAAATTGGTTGA
AAAGTCTGGTGAATTAGATAACCTAATTAAAATTGTAAAAGACGCAGAGA
CTTCTGGAAAACTGAAAGAGTATTTTGACGATTGGAGTGAAAAGCTCTGG
ACACATGGGAATCATAGTGCTGTTTTTGCAATGAAGCCTTTAGCATAGAT
TTTTGTTTAATTTTTATTAAGTTTGATTTTTCATAAATTTTTCAATTGCT
GGTAAAAGACTTATTTATAAATTATTAACTACGGTGAGGGCTAGAAGGTT
TATAAAGGTTTTTATACGTTTAGAATTTTTTATAAAGGTCATTTAAATAC
ATACACATGTTTTTTCTGGGAAAAATCAATGTATC Coding sequence (CDS) from alignment at sc0000080:432745..438179- >TCONS_00007917 ID=TCONS_00007917|Name=TCONS_00007917|organism=Clytia hemisphaerica|type=CDS|length=2619bp|location=Sequence derived from alignment at sc0000080:432745..438179- (Clytia hemisphaerica) ATGATTCAGTCCTTAGAGAAACTTAATTTTGAGAATATTGTTTGCACATA CTTTCCAGGCTCTCGCTTAGTTAAAAAGGAGATTTATGATGAAATTCAAT GTATAGATGATCCTAAATGGAGATATTATCTTTCTCAGTACAAATTGGTT GAAAAGTCTGGTGAATTAGATAACCTAATTAAAATTGTAAAAGACGCAGA GACTTCTGGAAAACTGAAAGAGTATTTTGACGATTGGAGTGAAAAGCTCT GGACACATGGGAATCATAGTGCTGTTTTTGCAATGAAGCCTTTAGCATAG ATCGATCTTTTGGATATTGGATGTGGTACAGGCAACTACAGTTATTCTTT CATGAAAAATGGTTTACAAAGCATTACCATTGCTGATGCTTCTCAGGAGA TGTTAGACTGTGCCAAAATCAAAATGAAAGTATTTGAAGATAAAGTCACT GCACAAGATATCATTTTACCAAACTTACCATTTCCTGAGAAAAGCTTTGA TGTTATTTCTTGCATGCAGGTTTTACACCATATTGATTCTGCTGCTTTAA AAGAATCAACCAAGGAACATCTTCAACGGGAAGACTATCCAAACATGCTT GAAACCTTGAGTCAAGCTTACGATGTTTTAAAACCTGGTGGGGTACTAGT TATTGATGTTATGTTTGAAGAAAATTGTGAAAGCTTTTGGTGGACCAGAT TATGTCCAATAGCTGCTAAGGCGTTCAAAAGACTAAGAATGAGCCAAAAG GACATGAGCAATTACATGAACTATTCTGAAGCTTCAAAGCTTTATGATGA AGCACGAGTTGCAGCAGATGCTGAAAACATTTACAACATTTTCACTGGGC TTCTCAAGAAACCAGCAAACAAAATGATTCAGTCCTTAGAGAAACTTAAT TTTGAGAATATTGTTTGCACATACTTTCCAGGCTCTCGCTTAGTTAAAAA GGAGATTTATGATGAAATTCAATGTATAGATGATCCTAAATGGAGATATT ATCTTTCTCAGTACAAATTGGTTGAAAAGTCTGGTGAATTAGATAACCTA ATTAAAATTGTAAAAGACGCAGAGACTTCTGGAAAACTGAAAGAGTATTT TGACGATTGGAGTGAAAAGCTCTGGACACATGGGAATCATAGTGCTGTTT TTGCAATGAAGCCTTTAGCATAGATCGATCTTTTGGATATTGGATGTGGT ACAGGCAACTACAGTTATTCTTTCATGAAAAATGGTTTACAAAGCATTAC CATTGCTGATGCTTCTCAGGAGATGTTAGACTGTGCCAAAATCAAAATGA AAGTATTTGAAGATAAAGTCACTGCACAAGATATCATTTTACCAAACTTA CCATTTCCTGAGAAAAGCTTTGATGTTATTTCTTGCATGCAGGTTTTACA CCATATTGATTCTGCTGCTTTAAAAGAATCAACCAAGGAACATCTTCAAC GGGAAGACTATCCAAACATGCTTGAAACCTTGAGTCAAGCTTACGATGTT TTAAAACCTGGTGGGGTACTAGTTATTGATGTTATGTTTGAAGAAAATTG TGAAAGCTTTTGGTGGACCAGATTATGTCCAATAGCTGCTAAGGCGTTCA AAAGACTAAGAATGAGCCAAAAGGACATGAGCAATTACATGAACTATTCT GAAGCTTCAAAGCTTTATGATGAAGCACGAGTTGCAGCAGATGCTGAAAA CATTTACAACATTTTCACTGGGCTTCTCAAGAAACCAGCAAACAAAATGA TTCAGTCCTTAGAGAAACTTAATTTTGAGAATATTGTTTGCACATACTTT CCAGGCTCTCGCTTAGTTAAAAAGGAGATTTATGATGAAATTCAATGTAT AGATGATCCTAAATGGAGATATTATCTTTCTCAGTACAAATTGGTTGAAA AGTCTGGTGAATTAGATAACCTAATTAAAATTGTAAAAGACGCAGAGACT TCTGGAAAACTGAAAGAGTATTTTGACGATTGGAGTGAAAAGCTCTGGAC ACATGGGAATCATAGTGCTGTTTTTGCAATGAAGCCTTTAGCATAGATCG ATCTTTTGGATATTGGATGTGGTACAGGCAACTACAGTTATTCTTTCATG AAAAATGGTTTACAAAGCATTACCATTGCTGATGCTTCTCAGGAGATGTT AGACTGTGCCAAAATCAAAATGAAAGTATTTGAAGATAAAGTCACTGCAC AAGATATCATTTTACCAAACTTACCATTTCCTGAGAAAAGCTTTGATGTT ATTTCTTGCATGCAGGTTTTACACCATATTGATTCTGCTGCTTTAAAAGA ATCAACCAAGGAACATCTTCAACGGGAAGACTATCCAAACATGCTTGAAA CCTTGAGTCAAGCTTACGATGTTTTAAAACCTGGTGGGGTACTAGTTATT GATGTTATGTTTGAAGAAAATTGTGAAAGCTTTTGGTGGACCAGATTATG TCCAATAGCTGCTAAGGCGTTCAAAAGACTAAGAATGAGCCAAAAGGACA TGAGCAATTACATGAACTATTCTGAAGCTTCAAAGCTTTATGATGAAGCA CGAGTTGCAGCAGATGCTGAAAACATTTACAACATTTTCACTGGGCTTCT CAAGAAACCAGCAAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007917-exon-sc0000080-1575043694:438067..438179 | TCONS_00007917-exon-sc0000080-1575043694:438067..438179 | Clytia hemisphaerica | exon |
TCONS_00007917-exon-sc0000080-1575043694:434023..434156 | TCONS_00007917-exon-sc0000080-1575043694:434023..434156 | Clytia hemisphaerica | exon |
TCONS_00007917-exon-sc0000080-1575043694:433331..433783 | TCONS_00007917-exon-sc0000080-1575043694:433331..433783 | Clytia hemisphaerica | exon |
TCONS_00007917-exon-sc0000080-1575043694:432745..433231 | TCONS_00007917-exon-sc0000080-1575043694:432745..433231 | Clytia hemisphaerica | exon |
TCONS_00007917-exon-sc0000080-1510915933:438067..438179 | TCONS_00007917-exon-sc0000080-1510915933:438067..438179 | Clytia hemisphaerica | exon |
TCONS_00007917-exon-sc0000080-1510915933:434023..434156 | TCONS_00007917-exon-sc0000080-1510915933:434023..434156 | Clytia hemisphaerica | exon |
TCONS_00007917-exon-sc0000080-1510915933:433331..433783 | TCONS_00007917-exon-sc0000080-1510915933:433331..433783 | Clytia hemisphaerica | exon |
TCONS_00007917-exon-sc0000080-1510915933:432745..433231 | TCONS_00007917-exon-sc0000080-1510915933:432745..433231 | Clytia hemisphaerica | exon |
TCONS_00007917-exon-sc0000080-1491911889:438067..438179 | TCONS_00007917-exon-sc0000080-1491911889:438067..438179 | Clytia hemisphaerica | exon |
TCONS_00007917-exon-sc0000080-1491911889:434023..434156 | TCONS_00007917-exon-sc0000080-1491911889:434023..434156 | Clytia hemisphaerica | exon |
TCONS_00007917-exon-sc0000080-1491911889:433331..433783 | TCONS_00007917-exon-sc0000080-1491911889:433331..433783 | Clytia hemisphaerica | exon |
TCONS_00007917-exon-sc0000080-1491911889:432745..433231 | TCONS_00007917-exon-sc0000080-1491911889:432745..433231 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000080 | supercontig | sc0000080:432745..438179 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR013216 | Methyltransf_11 |
IPR029063 | SAM-dependent_MTases |
Vocabulary: Biological Process
Term | Definition |
GO:0008152 | metabolic process |
Vocabulary: Molecular Function
Term | Definition |
GO:0008168 | methyltransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0008152 |
metabolic process |
molecular_function |
GO:0008168 |
methyltransferase activity |
Blast
The following BLAST results are available for this feature:
|