TCONS_00007887 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007887
Unique NameTCONS_00007887
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3207

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007887 ID=TCONS_00007887|Name=TCONS_00007887|organism=Clytia hemisphaerica|type=transcript|length=3207bp
GTTTTGCTTTCCTTTCCAGCACCAAGCTCCCAGatGGCTAAAAGTCTCTT
CATGCCACTATCAAGTCTACAAGATTTGGGATTCATTATCAAACCTCACA
AAGATAATGTCTACAACGACATCCATAAAAGGATGGACATCAATTCGAAC
TCCAACATCGAAGTACCAATCGAGATAGCCAAACAGTTGGGACTTCTAAA
ACCTCCTGGAGCAGGAGGATGCCCACCGTGTCCCAATCCTCCTTGTACTG
GAGGTCCTGCAGGATGTGATGTCAAAGCTAAGTCCATCTCAGAAGTGCAG
ATCAATGGTAAAGGTGATTACAGTGCACCAGTGGGGCCAGTTTTCAGTGT
TGGTGATGCTCCACCTCCGGGTATTGTGCATCCAGAATTGTTAACACTGA
ATTTGAAAGGTAAAGATGGACGCATTGGAAAACCAGGACCCAAGGGACCA
CCAGGAGATGCTGGNCAAGTCTACAAGATTTGGGATTCATTATCAAACCT
CACAAAGATAATGTCTACAACGACATCCATAAAAGGATGGACATCAATTC
GAACTCCAACATCGAAGTACCAATCGAGATAGCCAAACAGTTGGGACTTC
TAAAACCTCCTGGAGCAGGAGGATGCCCACCGTGTCCCAATCCTCCTTGT
ACTGGAGGTCCTGCAGGATGTGATGTCAAAGCTAAGTCCATCTCAGAAGT
GCAGATCAATGGTAAAGGTGATTACAGTGCACCAGTGGGGCCAGTTTTCA
GTGTTGGTGATGCTCCACCTCCGGGTATTGTGCATCCAGAATTGTTAACA
CTGAATTTGAAAGGTAAAGATGGACGCATTGGAAAACCAGGACCCAAGGG
ACCACCAGGAGATGCTGGCCCACCAGGCTCACAAGGTCCAATGGGTCCCA
AAGGAGAACAAGGTGATGAATGTATTGCATCCAAGATGCCAAAAGATAAA
CAATGTTCACCAGACATCGTGAGCAACCTTCGTGCAAGATTGGAGAAAGT
GGAGAAATGTGCAACCaATACAACCTTGTTAGCAGCCATAACATTGAACG
TATTGAGTACACTTGCAAATCAAAGACACGAAAAACCTAAGTCCATTCTC
GTCAAACAAAAACGCCCTCCACCTCCACCACCGCCCGCTGCACCAGCCCC
TCCTCCGCCTCCTGCTCAACCTGCCGCTCCACCAGCACCCGCTAGTCCAC
CTTCACCTCCATCGCCACCCTCGGGACAGCCAGCACCTGCTGCACCACCT
TGTCCTGCAGGACCAGGGAAATGTGACGGAAACCAAGGCAATGCCAATGT
CCAATCAGATGTCAAGATCGACCTGACAGGAGGCGCTGACAAACAACAAC
CAGCTTGTAAACGATCTGGCACGTGCGCAACCGATCCGTCTAAAACAGCC
AATGCATTGCAAACACTACAACAGCTTCTAAACCAAGCTAAagcacaaca
acaacaaaatcctGTGGCCAAAGATTCTGCAACTGTCTTGGTGAATGGTG
TACCGGTTAAAATACCGCTCGGGAAATAAATTGAAAGCAATGCAACTGTC
ATTCATTGGGCATCTTTCATTTGTGCTATCTGTCTATCTAAGTAGTAAAT
ACATTACAATAAATTTGTTAAATAAAAATAGCGTCTAATCgatataaaat
ttttattataattttgatatttctcaaTTCTTAtgaataatcagatggtt
tgagatgtttttgtttgttgaaCCTTTCTGTGAGCCCTGAGTAAAACCAA
GAAATGCAAGTAGCAAGAATTCCAGTGTAAAAAGCGTGTAAGTACCCAAC
TTAAAAAATTGTGATTGAAAAAAGTGAGGTAAATTGTTTTCGGATGTTTT
GCTCAGCGTCATGAAAGGATTCTGCAGAAGAAAAAANACTGCTGCACCAC
CTTGTCCTGCAGGACCAGGGAAATGTGACGGAAATCAAGGCAATGCCAAT
GTCCAATCAGATGTCAAGATCGACCTGACAGGAGGCGCTGACAAACAACA
ACCAGCTTGTAAACGATCTGGCACATGCGCAACCGATCCGTCTAAAACAG
CCAATGCATTGCAAACACTACAACAGCTTCTAAACCAAGCTAAagcacaa
caacaacaaaatcctGTGGCCAAAGATTCTGCAACTGTCTTGGTGAATGG
TGTACCGGTTAAAATACCGCTCGGGAAATAAATTGAAAGCAATGCAACTG
TCATTCATTGGGCATCTTTCATTTGTGCTGTCTGTCTATCTAAGTAGTAA
ATACATTACAATAAATTTGTTAAATAAAAATAGCGTCTAATCgatataaa
atttttattataattttgatatttctcaaTTCTTATGactaatcagatgg
tttgagatgtttttgtttgttgaaCCTTTCTGTGAGCCCTGAGTAAAACC
AAGAAATGCAAGTAGCAAGAATTCCAGTGTAAAAAGCGTGTAAGTACCCA
ACTTAAAAAATTGTGATTGAAAAAAGTGAGGTAAATTGTTTTCGGATGTT
TTGCTCAGCGTCATGAAAGGATTCtgcagaagaaaaaaatctcaaacaat
CTTTTTTATGAGTTATTTGACCTATACACATCACATGTAcataaatttca
ttttatttaaaaatactaaatagaaaatagaaaataatgatttaaaaaat
gcaaatcaaaaaagttttcgtAGCTTCGTTTATGTCCAAAAAGTAAACCA
ATGTGGTAAAACATACAGCGGATACCTACCCTGTCCCAACAATATTTCAG
CAGCTCAATTGTTCGTTTGTCCGTTCAACAAGCAAGGAGCTGTCATAATT
CATAATAACACCTTACTCTTTTGTCATGTAATCACAAAAATGAAGCAAGA
AAGCAAACAACAACATACAGGTATGCCTGATAGTCCATACTTGAAACAGC
TATCTAAGTGAGATACATTCTTCATTCCTCAtctttttcatgctctttct
cACAATGTTCCTTAGATGAGATGAAGGCTAAAGGCGCCATACCAATGATA
CAACCTATCACGATGCCAATCGCACGACCCTGAGTTGTGAAAAAATCCAA
CAAacaattaaaggttttatttttacataagtgttcccgtttcatatcag
gcacatattttatatcaggacagtgtgttgccattgttatattatgctga
tataagcaaaaaatgttgttttttcctctttctgatcaatcttgctccac
atccgtg
Run BLAST on NCBI

transcript from alignment at sc0000080:239496..244493-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007887 ID=TCONS_00007887|Name=TCONS_00007887|organism=Clytia hemisphaerica|type=transcript|length=4998bp|location=Sequence derived from alignment at sc0000080:239496..244493- (Clytia hemisphaerica)
GTTTTGCTTTCCTTTCCAGCACCAAGCTCCCAGGTAAATATATTAATCAA
ATTAGTTAGAACCTCTAGAGTGTGTACCACGTCTTTAGACTTTTGTCCAT
AGCTCATTGTTATAGATGGCACAACACATTATCAATTGAAAACCTTTTGA
AACAAACCACACAAGCCCAAACCAACTAATCTTCCAAAACCATCCCATCA
AATCAACTTTTTGATTTTTCAGATGGCTAAAAGTCTCTTCATGCCACTAT
CAAGTCTACAAGATTTGGGATTCATTATCAAACCTCACAAAGATAATGTC
TACAACGACATCCATAAAAGGATGGTAAGTTATTTATCCACAACTCCTTG
GTAATCATAGATTGAACTTTTATCGATGTCATGCTAGGATCTCCTTATCT
AGAATGTAAAGATCTGAGATCAAACTGGCATAAAACAAGCTAATATAAAT
AACACTGTTATTTTGGCATCGGATAGTGCAGACACACTGTATATATTGTG
AATGTTAATATACTGTAATCTCCACCAAATCTAGACTTAGCTAGAGACAT
ATCATACGAGCTGTATTCCTTATTGAAATTACAGGACATCAATTCGAACT
CCAACATCGAAGTACCAATCGAGATAGCCAAACAGTTGGGACTTCTAAAA
CCTCCTGGAGCAGGAGGATGCCCACCGTGTCCCAATCCTCCTTGTACTGG
AGGTCCTGCAGGATGTGATGTCAAAGCTAAGTCCATCTCAGAAGTGCAGA
TCAATGGTAAAGGTGATTACAGTGCACCAGTGGGGCCAGTTTTCAGTGTT
GGTGATGCTCCACCTCCGGGTATTGTGCATCCAGTAAGTTCTTTTGTTCT
TAATCATCGTGAAAAAGTTAAAAAGCCATACAATGTTGGAAAATAATATC
CGAGGAAATTAATCTACTCAGATCTTTGAAATGAAGAAAATCAAGATGTA
AAATGAAAAAAAAAATAAGAATAGGGTCAATATACTTTTTTTCATACTAC
ACTTTAGGAATTGTTAACACTGAATTTGAAAGGTAAAGATGGACGCATTG
GAAAACCAGGACCCAAGGGACCACCAGGAGATGCTGGNCAAGTCTACAAG
ATTTGGGATTCATTATCAAACCTCACAAAGATAATGTCTACAACGACATC
CATAAAAGGATGGTAAGTTATTTATCCACAACTCCTTGGTAATCATAGAT
TGAACTTTTATCGATGTCATGCTAGGATCTCCTTATCTAGAATGTAAAGA
TCTGAGATCAAACTGGCATAAAACAAGCTAATATAAATAACACTGTTATT
TTGGCATCGGATAGTGCAGACACACTGTATATATTGTGAATGTTAATATA
CTGTAATCTCCACCAAATCTAGACTTAGCTAGAGACATATCATACGAGCT
GTATTCCTTATTGAAATTACAGGACATCAATTCGAACTCCAACATCGAAG
TACCAATCGAGATAGCCAAACAGTTGGGACTTCTAAAACCTCCTGGAGCA
GGAGGATGCCCACCGTGTCCCAATCCTCCTTGTACTGGAGGTCCTGCAGG
ATGTGATGTCAAAGCTAAGTCCATCTCAGAAGTGCAGATCAATGGTAAAG
GTGATTACAGTGCACCAGTGGGGCCAGTTTTCAGTGTTGGTGATGCTCCA
CCTCCGGGTATTGTGCATCCAGTAAGTTCTTTTGTTCTTAATCATCGTGA
AAAAGTTAAAAAGCCATACAATGTTGGAAAATAATATCCGAGGAAATTAA
TCTACTCAGATCTTTGAAATGAAGAAAATCAAGATGTAAAATGAAAAAAA
AAATAAGAATAGGGTCAATATACTTTTTTTCATACTACACTTTAGGAATT
GTTAACACTGAATTTGAAAGGTAAAGATGGACGCATTGGAAAACCAGGAC
CCAAGGGACCACCAGGAGATGCTGGCCCACCAGGCTCACAAGGTCCAATG
GGTCCCAAAGGAGAACAAGGTGATGAATGTATTGCATCCAAGATGCCAAA
AGATGTGAGTTATATTTAGTGCATTCAATAAATTCCAATATTAAATTAGG
CTTGCAATTAAGGCGATGCTATTCTGTAATGAATGTCATACTTGACATTG
AAATCAATAAGAAGCTCAAAGGAAAGCACTGATATATACTAAAACATTTC
CTTGCAGAAACAATGTTCACCAGACATCGTGAGCAACCTTCGTGCAAGAT
TGGAGAAAGTGGAGAAATGTGCAACCGTAAGTATTCATCAAGATATGTCT
TCTCCTCAAATATGGTCAGTCAAGAACCTTTTATAAAATATCCCCATTTA
ATCATCAAAATTCATTGAATTAAATATAACTTTACTGCAATCGACAAGTA
TTTTAACTCATACCCATATGTAATAATCACGACATTGAAGACATCATATA
AAATTCAATTTAATCATTTTTAGAATACAACCTTGTTAGCAGCCATAACA
TTGAACGTATTGAGTACACTTGCAAATCAAAGACACGAAAAACCTAAGTC
CATTCTCGTCAAACAAAAACGCCCTCCACCTCCACCACCGCCCGCTGCAC
CAGCCCCTCCTCCGCCTCCTGCTCAACCTGCCGCTCCACCAGCACCCGCT
AGTCCACCTTCACCTCCATCGCCACCCTCGGGACAGCCAGCACCTGCTGC
ACCACCTTGTCCTGCAGGACCAGGGAAATGTGACGGAAACCAAGGCAGTA
AGTATTAAATCAAGAAATATTTGTAGAAATCAAAACATAAAATTATTTCA
CTGTGAGTCAAAAGGTAACCTTGTCTCCATAAAGTCTAGTCTTAAATAAT
AAAGCTGTTGAAATGAATGAAGGAATAAATCCTACTACGAACCTCAGTTA
TATCAACTCTCTTGAAAATGTATATCATATATTCTTTAGATGCCAATGTC
CAATCAGATGTCAAGATCGACCTGACAGGAGGCGCTGACAAACAACAACC
AGCTTGTAAACGATCTGGCACGTGCGCAACCGATCCGTCTAAAACAGCCA
ATGCATTGCAAACACTACAACAGCTTCTAAACCAAGCTAAAGCACAACAA
CAACAAAATCCTGTGGCCAAAGATTCTGCAACTGTCTTGGTGAATGGTGT
ACCGGTTAAAATACCGCTCGGGAAATAAATTGAAAGCAATGCAACTGTCA
TTCATTGGGCATCTTTCATTTGTGCTATCTGTCTATCTAAGTAGTAAATA
CATTACAATAAATTTGTTAAATAAAAATAGCGTCTAATCGATATAAAATT
TTTATTATAATTTTGATATTTCTCAATTCTTATGAATAATCAGATGGTTT
GAGATGTTTTTGTTTGTTGAACCTTTCTGTGAGCCCTGAGTAAAACCAAG
AAATGCAAGTAGCAAGAATTCCAGTGTAAAAAGCGTGTAAGTACCCAACT
TAAAAAATTGTGATTGAAAAAAGTGAGGTAAATTGTTTTCGGATGTTTTG
CTCAGCGTCATGAAAGGATTCTGCAGAAGAAAAAANACTGCTGCACCACC
TTGTCCTGCAGGACCAGGGAAATGTGACGGAAATCAAGGCAGTAAGTATT
AAATCAGGAAATATTTGTAGAAATCAAAACATAAAATTATTTCACTGTGA
GTCAAAAGGTAACCTTTTCTCCATAAAGTCTAGTCTTAAATAAGAAAGCT
ATTGAAATGAATGAAGGAATAAATCCTACTACGGACCTCAGTTATATCAA
CTCTCTTGAAAATGTATATCATATATTCTTTAGATGCCAATGTCCAATCA
GATGTCAAGATCGACCTGACAGGAGGCGCTGACAAACAACAACCAGCTTG
TAAACGATCTGGCACATGCGCAACCGATCCGTCTAAAACAGCCAATGCAT
TGCAAACACTACAACAGCTTCTAAACCAAGCTAAAGCACAACAACAACAA
AATCCTGTGGCCAAAGATTCTGCAACTGTCTTGGTGAATGGTGTACCGGT
TAAAATACCGCTCGGGAAATAAATTGAAAGCAATGCAACTGTCATTCATT
GGGCATCTTTCATTTGTGCTGTCTGTCTATCTAAGTAGTAAATACATTAC
AATAAATTTGTTAAATAAAAATAGCGTCTAATCGATATAAAATTTTTATT
ATAATTTTGATATTTCTCAATTCTTATGACTAATCAGATGGTTTGAGATG
TTTTTGTTTGTTGAACCTTTCTGTGAGCCCTGAGTAAAACCAAGAAATGC
AAGTAGCAAGAATTCCAGTGTAAAAAGCGTGTAAGTACCCAACTTAAAAA
ATTGTGATTGAAAAAAGTGAGGTAAATTGTTTTCGGATGTTTTGCTCAGC
GTCATGAAAGGATTCTGCAGAAGAAAAAAATCTCAAACAATCTTTTTTAT
GAGTTATTTGACCTATACACATCACATGTACATAAATTTCATTTTATTTA
AAAATACTAAATAGAAAATAGAAAATAATGATTTAAAAAATGCAAATCAA
AAAAGTTTTCGTAGCTTCGTTTATGTCCAAAAAGTAAACCAATGTGGTAA
AACATACAGCGGATACCTACCCTGTCCCAACAATATTTCAGCAGCTCAAT
TGTTCGTTTGTCCGTTCAACAAGCAAGGAGCTGTCATAATTCATAATAAC
ACCTTACTCTTTTGTCATGTAATCACAAAAATGAAGCAAGAAAGCAAACA
ACAACATACAGGTATGCCTGATAGTCCATACTTGAAACAGCTATCTAAGT
GAGATACATTCTTCATTCCTCATCTTTTTCATGCTCTTTCTCACAATGTT
CCTTAGATGAGATGAAGGCTAAAGGCGCCATACCAATGATACAACCTATC
ACGATGCCAATCGCACGACCCTGAGTTGTGAAAAAATCCAACAAACAATT
AAAGGTTTTATTTTTACATAAGTGTTCCCGTTTCATATCAGGCACATATT
TTATATCAGGACAGTGTGTTGCCATTGTTATATTATGCTGATATAAGCAA
AAAATGTTGTTTTTTCCTCTTTCTGATCAATCTTGCTCCACATCCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004463XLOC_004463Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007887-exon-sc0000080-1575043694:244461..244493TCONS_00007887-exon-sc0000080-1575043694:244461..244493Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1575043694:244170..244271TCONS_00007887-exon-sc0000080-1575043694:244170..244271Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1575043694:243661..243909TCONS_00007887-exon-sc0000080-1575043694:243661..243909Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1575043694:243332..243486TCONS_00007887-exon-sc0000080-1575043694:243332..243486Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1575043694:242823..243071TCONS_00007887-exon-sc0000080-1575043694:242823..243071Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1575043694:242490..242648TCONS_00007887-exon-sc0000080-1575043694:242490..242648Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1575043694:242268..242336TCONS_00007887-exon-sc0000080-1575043694:242268..242336Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1575043694:241797..242070TCONS_00007887-exon-sc0000080-1575043694:241797..242070Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1575043694:240953..241604TCONS_00007887-exon-sc0000080-1575043694:240953..241604Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1575043694:239496..240760TCONS_00007887-exon-sc0000080-1575043694:239496..240760Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1510915933:244461..244493TCONS_00007887-exon-sc0000080-1510915933:244461..244493Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1510915933:244170..244271TCONS_00007887-exon-sc0000080-1510915933:244170..244271Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1510915933:243661..243909TCONS_00007887-exon-sc0000080-1510915933:243661..243909Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1510915933:243332..243486TCONS_00007887-exon-sc0000080-1510915933:243332..243486Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1510915933:242823..243071TCONS_00007887-exon-sc0000080-1510915933:242823..243071Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1510915933:242490..242648TCONS_00007887-exon-sc0000080-1510915933:242490..242648Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1510915933:242268..242336TCONS_00007887-exon-sc0000080-1510915933:242268..242336Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1510915933:241797..242070TCONS_00007887-exon-sc0000080-1510915933:241797..242070Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1510915933:240953..241604TCONS_00007887-exon-sc0000080-1510915933:240953..241604Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1510915933:239496..240760TCONS_00007887-exon-sc0000080-1510915933:239496..240760Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1491911889:244461..244493TCONS_00007887-exon-sc0000080-1491911889:244461..244493Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1491911889:244170..244271TCONS_00007887-exon-sc0000080-1491911889:244170..244271Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1491911889:243661..243909TCONS_00007887-exon-sc0000080-1491911889:243661..243909Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1491911889:243332..243486TCONS_00007887-exon-sc0000080-1491911889:243332..243486Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1491911889:242823..243071TCONS_00007887-exon-sc0000080-1491911889:242823..243071Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1491911889:242490..242648TCONS_00007887-exon-sc0000080-1491911889:242490..242648Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1491911889:242268..242336TCONS_00007887-exon-sc0000080-1491911889:242268..242336Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1491911889:241797..242070TCONS_00007887-exon-sc0000080-1491911889:241797..242070Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1491911889:240953..241604TCONS_00007887-exon-sc0000080-1491911889:240953..241604Clytia hemisphaericaexon
TCONS_00007887-exon-sc0000080-1491911889:239496..240760TCONS_00007887-exon-sc0000080-1491911889:239496..240760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:239496..244493 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.148002	0.0916622	0.266909	0.643339	0.467236	0.0606529	0.349055	1.39133	0	0.540554	0	0	0.0849057	0.248485	0.100688	0	0	0.0841452	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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