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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007821 ID=TCONS_00007821|Name=TCONS_00007821|organism=Clytia hemisphaerica|type=transcript|length=1350bpRun BLAST on NCBI protein sequence of TCONS_00007821-protein >TCONS_00007821-protein ID=TCONS_00007821-protein|Name=TCONS_00007821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=389bp NIFLKMNENTSGIVETVDQETIMGDIEVKEPGIHDEGKEIPFPEYRAPDERun BLAST on NCBI transcript from alignment at sc0000080:255594..279867+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007821 ID=TCONS_00007821|Name=TCONS_00007821|organism=Clytia hemisphaerica|type=transcript|length=24274bp|location=Sequence derived from alignment at sc0000080:255594..279867+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000080:255594..279867+ >TCONS_00007821 ID=TCONS_00007821|Name=TCONS_00007821|organism=Clytia hemisphaerica|type=CDS|length=16380bp|location=Sequence derived from alignment at sc0000080:255594..279867+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00007821 vs. Swiss-Prot (Human)
Match: HDA11 (Histone deacetylase 11 OS=Homo sapiens GN=HDAC11 PE=1 SV=1) HSP 1 Score: 380.563 bits (976), Expect = 9.033e-129 Identity = 178/317 (56.15%), Postives = 238/317 (75.08%), Query Frame = 3
Query: 198 LIYKLPDDKLPIIYDDIYNITFMGLQKLHPFDSEKWGRIVDILSNDGCKAFQKLRSMVCKPREATDDILAVVHTQDYLDSLKWSSKVARVTEVLPIAILPNFVVQSKLLRKLRTQTGGTVLAAYAAYRRGWSINIGGGFHHCYSTDGGGFCAYADITMAIKMLMEKVD-LDRIMIVDLDAHQGNGHERDFMGNEKVYIMDVYNRSIYPQDEYAKGAIKKKCPIVPGLKTDPYMEVVTYNYQKALEEFKPQFILYNAGTDILEGDPLGMLNISEEGVIQRDEFVFKLAREQQIPIAMVTSGGYQRSTANVIARSIINL 1145
L +P+ + PI+Y YNITFMGL+KLHPFD+ KWG++++ L + + SM+ + REA+++ L VVHT+ YL+ LKWS VA +TE+ P+ LPNF+VQ K+LR LRTQTGGT++A A RGW+IN+GGGFHHC S GGGFCAYADIT+AIK L E+V+ + R I+DLDAHQGNGHERDFM +++VYIMDVYNR IYP D +AK AI++K + G + D Y++ V N +K+L+E P ++YNAGTDILEGD LG L+IS G+++RDE VF++ R +++PI MVTSGGYQ+ TA +IA SI+NL
Sbjct: 7 LYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLS----DSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNL 319 The following BLAST results are available for this feature:
BLAST of TCONS_00007821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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