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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007777 ID=TCONS_00007777|Name=TCONS_00007777|organism=Clytia hemisphaerica|type=transcript|length=1443bp
CTGCCATGAAAGGAGACCTGTCCAAATATGACGCTGTTTTCTTAGATGAG
TGGGGGGAGAACGTCTATAAATATTTACCCTTTTCTTGGGAACCGAAATT
TTTTTGGATAGCACCTGCAGAAGCACGCGATAGCAACAATGATTTCTATT
TTAAACAATTGCAACATTTTAAATATATTCGATTACACACAAACTTTCGG
AACAGTAAATCAATTGTTAAAACATCAATGATATTGATAGAGCAAGAAGC
ATACCGTCTTGCTAATAGCATCCGTGAACCGCCGTCAAATTTCCCTATAG
GACCAACACCGATCCATATGAGCTCCATCGAAGAAGCAatacaaaaagta
caaaaagaatCTTCAAATGGTATCTTGGTTATCTTAAACTCTGTGGATTA
TGAACCCTTGCCTTTGGATGGTGTGAAAGAAGCCAAATGTATCAAGAATT
TCAATGCAAACGAAAACCCTTTGCATTGGTTACAAGAAGGGAAGATTTTA
ATCACCGATGAATCAGCAGTCAAGGGTTTTCAATGGCCTATAGTCGTTTT
TGCAGCAGATGGCCCATTCATTGATAAATCCAACAAATGTAACGTGGCNA
TTTTTGCAGCAGATGGCCCATACATTGATAAATCCAACAAATGTAACGTG
GCAATGAGATGTACTACCAACCTAATCTTTGTTGGGGCGATTGAAGCCAA
AACACCGAAAGAATTATATTACAACCAGGTTTTAAAACTGTTGGAGCTCT
CGGTGGATGACGATGAGTTTTCGGTAACGCTTAAAGTCTGTATTCAGCAG
TTGATACACGGATATCTCACCTATAACAAGGATTGTCAATTTTTCGAACC
AGTCTTACCGTCGCTAAAAGAAACTATAGAATACATCGAAAAAGACCGAA
CAGTGACAGATGCGAGTCGTGCGTTTTCAATGATTCGGAATTTTTTGTGT
ACCATAATCACGGAGATGTTTTGGACATTTCACAAGGTTGATGATGAAAA
TCTTAAAGCAGAATACAAAGAAGTGCTTGACGAATTTTGTGATATAATGG
TGAGCGAAATCGATAAGCGTGCAGAAAAGTCCTCCGACGGGAATTCTTGG
AGACTAAGACATTGTCTCGAGATCATTACAGAGCTGCTAAACCAAAAATA
CACCAGTTTTTTCTGGTTAAAAGAAACCTTTGCTAATTGCACTCATCTAG
TGACAATACTGTCTGTAATAGATATATTTTATGGACATTATGATATGAAG
ACGATAAATTTTCTGAGAAGATATATGAAATTTCTAATGAAGATCGAGAC
GGATCTAACATATCCATATGATCAACTACAAGTGATTATTGATGACAATC
TTTGGATGAAAAACGTCCACGTTCAAACTCAAAACTTCATTTCTACTCTG
AAAGATGACCCTGACGGTTATTTTCCTTCATCATGGGAAGAGA Run BLAST on NCBI protein sequence of TCONS_00007777-protein >TCONS_00007777-protein ID=TCONS_00007777-protein|Name=TCONS_00007777-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp
AMKGDLSKYDAVFLDEWGENVYKYLPFSWEPKFFWIAPAEARDSNNDFYF
KQLQHFKYIRLHTNFRNSKSIVKTSMILIEQEAYRLANSIREPPSNFPIG
PTPIHMSSIEEAIQKVQKESSNGILVILNSVDYEPLPLDGVKEAKCIKNF
NANENPLHWLQEGKILITDESAVKGFQWPIVVFAADGPFIDKSNKCNVXI
FAADGPYIDKSNKCNVAMRCTTNLIFVGAIEAKTPKELYYNQVLKLLELS
VDDDEFSVTLKVCIQQLIHGYLTYNKDCQFFEPVLPSLKETIEYIEKDRT
VTDASRAFSMIRNFLCTIITEMFWTFHKVDDENLKAEYKEVLDEFCDIMV
SEIDKRAEKSSDGNSWRLRHCLEIITELLNQKYTSFFWLKETFANCTHLV
TILSVIDIFYGHYDMKTINFLRRYMKFLMKIETDLTYPYDQLQVIIDDNL
WMKNVHVQTQNFISTLKDDPDGYFPSSWEE Run BLAST on NCBI transcript from alignment at sc0000079:648942..650384 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007777 ID=TCONS_00007777|Name=TCONS_00007777|organism=Clytia hemisphaerica|type=transcript|length=1443bp|location=Sequence derived from alignment at sc0000079:648942..650384 (Clytia hemisphaerica)
TCTCTTCCCATGATGAAGGAAAATAACCGTCAGGGTCATCTTTCAGAGTA
GAAATGAAGTTTTGAGTTTGAACGTGGACGTTTTTCATCCAAAGATTGTC
ATCAATAATCACTTGTAGTTGATCATATGGATATGTTAGATCCGTCTCGA
TCTTCATTAGAAATTTCATATATCTTCTCAGAAAATTTATCGTCTTCATA
TCATAATGTCCATAAAATATATCTATTACAGACAGTATTGTCACTAGATG
AGTGCAATTAGCAAAGGTTTCTTTTAACCAGAAAAAACTGGTGTATTTTT
GGTTTAGCAGCTCTGTAATGATCTCGAGACAATGTCTTAGTCTCCAAGAA
TTCCCGTCGGAGGACTTTTCTGCACGCTTATCGATTTCGCTCACCATTAT
ATCACAAAATTCGTCAAGCACTTCTTTGTATTCTGCTTTAAGATTTTCAT
CATCAACCTTGTGAAATGTCCAAAACATCTCCGTGATTATGGTACACAAA
AAATTCCGAATCATTGAAAACGCACGACTCGCATCTGTCACTGTTCGGTC
TTTTTCGATGTATTCTATAGTTTCTTTTAGCGACGGTAAGACTGGTTCGA
AAAATTGACAATCCTTGTTATAGGTGAGATATCCGTGTATCAACTGCTGA
ATACAGACTTTAAGCGTTACCGAAAACTCATCGTCATCCACCGAGAGCTC
CAACAGTTTTAAAACCTGGTTGTAATATAATTCTTTCGGTGTTTTGGCTT
CAATCGCCCCAACAAAGATTAGGTTGGTAGTACATCTCATTGCCACGTTA
CATTTGTTGGATTTATCAATGTATGGGCCATCTGCTGCAAAAATNGCCAC
GTTACATTTGTTGGATTTATCAATGAATGGGCCATCTGCTGCAAAAACGA
CTATAGGCCATTGAAAACCCTTGACTGCTGATTCATCGGTGATTAAAATC
TTCCCTTCTTGTAACCAATGCAAAGGGTTTTCGTTTGCATTGAAATTCTT
GATACATTTGGCTTCTTTCACACCATCCAAAGGCAAGGGTTCATAATCCA
CAGAGTTTAAGATAACCAAGATACCATTTGAAGattctttttgtactttt
tgtatTGCTTCTTCGATGGAGCTCATATGGATCGGTGTTGGTCCTATAGG
GAAATTTGACGGCGGTTCACGGATGCTATTAGCAAGACGGTATGCTTCTT
GCTCTATCAATATCATTGATGTTTTAACAATTGATTTACTGTTCCGAAAG
TTTGTGTGTAATCGAATATATTTAAAATGTTGCAATTGTTTAAAATAGAA
ATCATTGTTGCTATCGCGTGCTTCTGCAGGTGCTATCCAAAAAAATTTCG
GTTCCCAAGAAAAGGGTAAATATTTATAGACGTTCTCCCCCCACTCATCT
AAGAAAACAGCGTCATATTTGGACAGGTCTCCTTTCATGGCAG Coding sequence (CDS) from alignment at sc0000079:648942..650384 >TCONS_00007777 ID=TCONS_00007777|Name=TCONS_00007777|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at sc0000079:648942..650384 (Clytia hemisphaerica)
CTCTTCCCATGATGAAGGAAAATAACCGTCAGGGTCATCTTTCAGAGTAG
AAATGAAGTTTTGAGTTTGAACGTGGACGTTTTTCATCCAAAGATTGTCA
TCAATAATCACTTGTAGTTGATCATATGGATATGTTAGATCCGTCTCGAT
CTTCATTAGAAATTTCATATATCTTCTCAGAAAATTTATCGTCTTCATAT
CATAATGTCCATAAAATATATCTATTACAGACAGTATTGTCACTAGATGA
GTGCAATTAGCAAAGGTTTCTTTTAACCAGAAAAAACTGGTGTATTTTTG
GTTTAGCAGCTCTGTAATGATCTCGAGACAATGTCTTAGTCTCCAAGAAT
TCCCGTCGGAGGACTTTTCTGCACGCTTATCGATTTCGCTCACCATTATA
TCACAAAATTCGTCAAGCACTTCTTTGTATTCTGCTTTAAGATTTTCATC
ATCAACCTTGTGAAATGTCCAAAACATCTCCGTGATTATGGTACACAAAA
AATTCCGAATCATTGAAAACGCACGACTCGCATCTGTCACTGTTCGGTCT
TTTTCGATGTATTCTATAGTTTCTTTTAGCGACGGTAAGACTGGTTCGAA
AAATTGACAATCCTTGTTATAGGTGAGATATCCGTGTATCAACTGCTGAA
TACAGACTTTAAGCGTTACCGAAAACTCATCGTCATCCACCGAGAGCTCC
AACAGTTTTAAAACCTGGTTGTAATATAATTCTTTCGGTGTTTTGGCTTC
AATCGCCCCAACAAAGATTAGGTTGGTAGTACATCTCATTGCCACGTTAC
ATTTGTTGGATTTATCAATGTATGGGCCATCTGCTGCAAAAATNGCCACG
TTACATTTGTTGGATTTATCAATGAATGGGCCATCTGCTGCAAAAACGAC
TATAGGCCATTGAAAACCCTTGACTGCTGATTCATCGGTGATTAAAATCT
TCCCTTCTTGTAACCAATGCAAAGGGTTTTCGTTTGCATTGAAATTCTTG
ATACATTTGGCTTCTTTCACACCATCCAAAGGCAAGGGTTCATAATCCAC
AGAGTTTAAGATAACCAAGATACCATTTGAAGattctttttgtacttttt
gtatTGCTTCTTCGATGGAGCTCATATGGATCGGTGTTGGTCCTATAGGG
AAATTTGACGGCGGTTCACGGATGCTATTAGCAAGACGGTATGCTTCTTG
CTCTATCAATATCATTGATGTTTTAACAATTGATTTACTGTTCCGAAAGT
TTGTGTGTAATCGAATATATTTAAAATGTTGCAATTGTTTAAAATAGAAA
TCATTGTTGCTATCGCGTGCTTCTGCAGGTGCTATCCAAAAAAATTTCGG
TTCCCAAGAAAAGGGTAAATATTTATAGACGTTCTCCCCCCACTCATCTA
AGAAAACAGCGTCATATTTGGACAGGTCTCCTTTCATGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007777-exon-sc0000079-1491911889:648942..650384 | TCONS_00007777-exon-sc0000079-1491911889:648942..650384 | Clytia hemisphaerica | exon |
| TCONS_00007777-exon-sc0000079-1510915933:648942..650384 | TCONS_00007777-exon-sc0000079-1510915933:648942..650384 | Clytia hemisphaerica | exon |
| TCONS_00007777-exon-sc0000079-1575043694:648942..650384 | TCONS_00007777-exon-sc0000079-1575043694:648942..650384 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000079 | supercontig | sc0000079:648942..650384 . |
Blast
The following BLAST results are available for this feature:
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