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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007715 ID=TCONS_00007715|Name=TCONS_00007715|organism=Clytia hemisphaerica|type=transcript|length=3674bpRun BLAST on NCBI protein sequence of TCONS_00007715-protein >TCONS_00007715-protein ID=TCONS_00007715-protein|Name=TCONS_00007715-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp MDFPSYNPPPPPPPPSQHQHQQQPNPYYQPPPVPNTGYGYEFNQINYSGPRun BLAST on NCBI transcript from alignment at sc0000079:346667..397332+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007715 ID=TCONS_00007715|Name=TCONS_00007715|organism=Clytia hemisphaerica|type=transcript|length=50666bp|location=Sequence derived from alignment at sc0000079:346667..397332+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000079:346667..397332+ >TCONS_00007715 ID=TCONS_00007715|Name=TCONS_00007715|organism=Clytia hemisphaerica|type=CDS|length=12360bp|location=Sequence derived from alignment at sc0000079:346667..397332+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007715 vs. Swiss-Prot (Human)
Match: RBM11 (Splicing regulator RBM11 OS=Homo sapiens GN=RBM11 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 5.981e-18 Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 2
Query: 41 MPKFQDPEKTVFVSNIEQRVTEELLWELFLQAGPLGSVHIPADRATGKNKTFAFVSYRHTCSVKYACELFNQLRLFRKPI 280
P ++ ++TVFV N+E RV EE+L+ELFLQAGPL V I DR GK K+F FV ++H SV YA L N +RL+ +PI
Sbjct: 2 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 80 The following BLAST results are available for this feature:
BLAST of TCONS_00007715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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