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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007705 ID=TCONS_00007705|Name=TCONS_00007705|organism=Clytia hemisphaerica|type=transcript|length=3053bpRun BLAST on NCBI protein sequence of TCONS_00007705-protein >TCONS_00007705-protein ID=TCONS_00007705-protein|Name=TCONS_00007705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=757bp MLLFVSLIFLSSIFGDALILDGALSTKSDWHFIARFCYQTDNGVLDYVFERun BLAST on NCBI transcript from alignment at sc0000079:190389..206213+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007705 ID=TCONS_00007705|Name=TCONS_00007705|organism=Clytia hemisphaerica|type=transcript|length=15825bp|location=Sequence derived from alignment at sc0000079:190389..206213+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000079:190389..206213+ >TCONS_00007705 ID=TCONS_00007705|Name=TCONS_00007705|organism=Clytia hemisphaerica|type=CDS|length=40932bp|location=Sequence derived from alignment at sc0000079:190389..206213+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007705 vs. Swiss-Prot (Human)
Match: TM145 (Transmembrane protein 145 OS=Homo sapiens GN=TMEM145 PE=2 SV=2) HSP 1 Score: 345.51 bits (885), Expect = 5.963e-107 Identity = 191/402 (47.51%), Postives = 268/402 (66.67%), Query Frame = 1
Query: 241 GALSTKSDWHFIARFCYQTDNGVLDYVFEYPESYCCQDAILYYD--SQWESVYPAPSLTCPSKVSVVSRQRNQILDLENRT--DGCQSIIRDGIRKISCKSYRTLSSARPRWWYLVISNCGAKQGLQLNYRMVMTNGRTFWTKHFSADEKNILETDXXXXXXXXXXXXXXXXXAYTLLTRQLFHTTYKLYMWAIFLELMSIVINIVYYTEYGLSGQPSKGVKNIGRACHCISDTXXXXXXXXXGKGWTITRARISPAGQIKLSVFCTLYGIAYVSLFIYEAKAFDPGEVLYIYESPAGVGLCIMKVIAWLWFCYGIFFTLKNYAEKRXXXXXXXXXXTIWFLSGPIIVLIAASSVEPYAREQIMNGVDRSVAFSAFAFFLILTRPSAANKNFPYHVRTTQIG 1434
G LS+K DW F+ RFC+ +D G LD+ F YPE+ CCQ+ +LY+D SQW +VY A C +K SV+ + NQ+++L + GCQ + +G R +SC S R+ S GLQL Y MV+TNG++FWT+HFSADE ILETD+ FL+ F+ +F LS Y L RQL HTTYK++M A +E++S++ +Y+ +Y G ++ VK + + S + +++LILLGKG+T+TR RIS AG +KLSV+ TLY + +V L IYEA+ FDPG+VLY YESPAG GL ++V A++WFCY + +L+++ EK+ FY PFFA YT+WF + P++ LIA + +ARE+I+NG+ + A FLI+TRPSAANKNFPYHVRT+QI
Sbjct: 34 GNLSSKEDWVFLTRFCFLSDYGRLDFRFRYPEAKCCQNILLYFDDPSQWPAVYKAGDKDCLAKESVIRPENNQVINLTTQYAWSGCQVVSEEGTRYLSCSSGRSFRSG---------------DGLQLEYEMVLTNGKSFWTRHFSADEFGILETDVTFLLIFILIFFLSCYFGYLLKGRQLLHTTYKMFMAAAGVEVLSLLFFCIYWGQYATDGIGNESVKILAKLLFSSSFLIFLLMLILLGKGFTVTRGRISHAGSVKLSVYMTLYTLTHVVLLIYEAEFFDPGQVLYTYESPAGYGLIGLQVAAYVWFCYAVLVSLRHFPEKQPFYVPFFAAYTLWFFAVPVMALIANFGIPKWAREKIVNGIQLGIHLYAHGVFLIMTRPSAANKNFPYHVRTSQIA 420 The following BLAST results are available for this feature:
BLAST of TCONS_00007705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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