TCONS_00007699 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007699
Unique NameTCONS_00007699
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007699 ID=TCONS_00007699|Name=TCONS_00007699|organism=Clytia hemisphaerica|type=transcript|length=1334bp
gaaaattaaatgaaaattttagctcttaattaaaaataagttatgaaatg
tttattttgtcACCCCTTGTCTACTCCAAACATGAGTTAACTATAAAATG
CCTTCATTTAAACAAAAATCACAGTTACAACCAAATCATACGCGATGAAG
ACTTTAATCATTTTAGCAGCAGTGATAGTTGCCACCTTAGGGTGCCGAGA
TCTAAGCACCTACTGTCAACGTTGGGCAAGATATTGCAGAACAAATTCAT
ACGTTCAAAAAAAATGCCCGAAAACCTGCAACCGATGCCCCGCACCGCCA
ACCAGACAACCAGtatGTACAGATAACCATAGTAGCTGCTCACGATGGGC
AATCATTTGCAAAACCAATGATTATGTAAAAAAACAGTGCCGAAGAACTT
GCAACTTATGCGGTGGACCAAACACCCCGGCTCCACCAACCAACCCACCT
AAGACAAACGCCCCGGCAACAAACCCACCTAAGACAAACGCCCCAGCAAC
AAACCCACCTAGAACAAACGCTCCACCAACAAGTGCACCAGGAACCTACC
CACCCCAAGGATCATGTGGACGTCCACAAGTTGCAATGTCCAGAGTTGTC
GGTGGAAAAGATGCAAAAGCTCATTCATGGCCATGGCAAATCGGACTTCA
CCGCAACGGTGGATTTATGTGTGGAGGTTCAATCATCAACAGCCGATGGG
TTGTTACTGCTGCTCATTGTGTACATCGAAGAAGTGCTCGTGACTTCAAA
GTCAAATTAGGTGACCACGATAGACGAAGAAGTGAAGGTGAACAATTCAT
CCAAGTCTCCAAAATCATCACTCATCAAGGTTACCAAAACAGCAGATTGA
ACAATGATATTGCTTTGTTACAATTGGCTACTCCAGCTAAATTCGGACGC
AATGTTCAACCTGTCTGTTTACCAAACCAAGGAGATTCTCCACAAGTTGG
TAGCAAATGTTACATTACAGGATGGGGAAAAATCAGACATCCAGGGTACT
CACACACCATCCTTCAACAACTTGCTATGAAAATCCAAAGCAAATCTACT
TGTTCAAGACAGAATGCAAAATATGCTCCAATCACCGATCAAATGTTGTG
CGCTGCCAACACTGATGTCTCTGCCAATCAATCTGGTTGCCATGGTGATT
CAGGTGGTCCATTCGTTTGTCAAAACAGTAATGGTTCATGGACATTACAT
GGAGCTGTCAGCTGGGGATCACCAAGATGTGACATCAAAGATGCTTTCAC
TGTCTTTGCCAGAGTTGGACAATTTAGAAACTGGATCGAACAAAACATGA
AGTAAACCAGCCAATGATATTGAACGACTTTTTC
Run BLAST on NCBI

transcript from alignment at sc0000079:131171..135109+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007699 ID=TCONS_00007699|Name=TCONS_00007699|organism=Clytia hemisphaerica|type=transcript|length=3939bp|location=Sequence derived from alignment at sc0000079:131171..135109+ (Clytia hemisphaerica)
gaaaattaaatgaaaattttagctcttaattaaaaataagttatgaaatg
tttattttgtcACCCCTTGTCTACTCCAAACATGAGTTAACTATAAAATG
CCTTCATTTAAACAAAAATCACAGTTACAACCAAATCATACGCGATGAAG
ACTTTAATCATTTTAGCAGCAGTGATAGTTGCCACCTTAGGTAAGATCTC
GTGCTTAGCGTATTATCATCTAAACGGGGAAAAAGTTGGCATCTAACTTT
ATCAAATCGATTTTAGCTTAATTTTTGTATGTATGATGCCAGTAATAATA
CACCTATTCATGACacgcaccattgcaatgtcttgtTTGTCTGCCTTGGT
TGTAAGTGATGTAAAATCAGTCATTTTCAACAAATCAGCAAAGATTGGCA
GATGTTTTACTTTCTCACTTAAATTGTAATTTTAAATGACATGAACTTAA
TTCTTTATGATTCACTTTAGGGTGCCGAGATCTAAGCACCTACTGTCAAC
GTTGGGCAAGATATTGCAGAACAAATTCATACGTTCAAAAAAAATGCCCG
AAAACCTGCAACCGATGCCCCGCACCGCCAACCAGACAACCAGGTAATTA
AATTAGTTGGGTTTGGAAAAAGCAGGGTGTTTGGAAAAAGTGGGGTGGGT
GGAAAAagtctcaaaacttaataagcggggggggggNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNggggggggggggggttggtataga
aatgtcctgggtggaaaatctttgaaaaggaggctaatacagcagaatta
ggggaACATGGGGAactttcataaaattttttgaaagattaattagcggg
ggatgcttattaggtacctgagagtaggTTAAAACATGAAACCATTTCAA
AGAACGTGAATTTCCATTTTGATAATCGATGTACTACTGATGGTTCAGAA
TATCATCATTGTTTTTTATGTATCGCTTCCGATTACCCGTCTATGAGCTT
TATGAGTCATGAAACGCTAACACACTCCTGTCTCAGATAGGCTGATTGTA
TATCACTACAGATTTGTGCCTCAAGTAAATTcgtcaaattaaatccccgt
cAAAATTTCGACATATCCtcgccaaaaaaaatttctctttcaccaacctt
tttaaaattttaagaacaaatatcctacaatttatATCTAGAAATAATTC
TTGGaagtaaaatatattacaaaaattaatcgatacatcttttttatttc
cgTAATACTTATCTTCGTAGCCTATCTTATGTTcaataaatcttcaattt
tttcttttcaaaagtatGTACAGATAACCATAGTAGCTGCTCACGATGGG
CAATCATTTGCAAAACCAATGATTATGTAAAAAAACAGTGCCGAAGAACT
TGCAACTTATGCGGTGGACCAAACACCCCGGCTCCACCAACCAACCCACC
TAAGACAAACGCCCCGGCAACAAACCCACCTAAGACAAACGCCCCAGCAA
CAAACCCACCTAGAACAAACGCTCCACCAACAAGTGCACCAGGAACCTAC
CCACCCCAAGGATCATGTGGACGTCCACAAGTTGCAATGTCCAGAGTTGT
CGGTGGAAAAGATGCAAAAGCTCATTCATGGCCATGGCAAATCGGACTTC
ACCGCAACGGTGGATTTATGTGTGGAGGTTCAATCATCAACAGCCGATGG
GTTGTTACTGCTGCTCATTGTGTACATCGAAGAAGTGCTCGTGACTTCAA
AGTCAAATTAGGTAAAAGCTTATCGAAAAACAGTTTATTTTGATATTGAG
AACCCTTTTGCTTGTAGGAAAAGGTACAGTGTTTTCGAGCGTgcaacatt
ttctgaaaaatgtgaaaaattttctttaaatcaatttgaaacgtgtatac
acgtcaCTCGGGTTTGAAGGGTTAAAGCTAGATTTGAAATAGCATTACAT
CTCTATCGAAATTGAAGTTctgtaaaaattgttttcaattgTTCAGGTGA
CCACGATAGACGAAGAAGTGAAGGTGAACAATTCATCCAAGTCTCCAAAA
TCATCACTCATCAAGGTTACCAAAACAGCAGATTGAACAATGATATTGCT
TTGTTACAATTGGCTACTCCAGCTAAATTCGGACGCAATGTTCAACCTGT
CTGTTTACCAAACCAAGGAGATTCTCCACAAGTTGGTAGCAAATGTTACA
TTACAGGTAGGACCAATACAGATGATATCTATATAACAAAGGCGAGacta
aaataaaatctaaactTCGCTCTCCCCagtgataatattgaaagtacAGT
AAAAAAAGAAAGTCCTTTGGTTCGTAGCCAAATACAGTTGAGCCTCAAAA
ACTTGAACAGCTCCCTTAACTCGAACTTAGCTggccccttcagttaacaa
tgccctaAAAAACCTTGCCATGATTCGAAGAAATTCCCCCCCCCCTTGCG
CGTGGTTGTGTTACAGAGACTCAACTAAAGTAACATTGCTTTTGTTTGAT
GGCTGCAAAAGAGAGTTTTCCGGTAATTTCAGCAATGTTCAGTGTTTCAT
TTTAACTTATTACTCAGGATTACGCCAATATCTATAATATTGACTCTATC
AGTGATTAATATCCATAATCATTATATACATCAACAGCTGTTGAAAGTCT
ACCAATTACATTATCATTTTTTAAGGATGGGGAAAAATCAGACATCCAGG
GTACTCACACACCATCCTTCAACAACTTGCTATGAAAATCCAAAGCAAAT
CTACTTGTTCAAGACAGAATGCAAAATATGCTCCAATCACCGATCAAATG
TTGTGCGCTGCCAACACTGATGTCTCTGCCAATCAATCTGGTTGCCATGG
TGATTCAGGTGGTCCATTCGTTTGTCAAAACAGTAATGGTTCATGGACAT
TACATGGAGCTGTCAGCTGGGGATCACCAAGATGTGACATCAAAGATGCT
TTCACTGTCTTTGCCAGAGTTGGACAATTTAGAAACTGGATCGAACAAAA
CATGAAGTAAACCAGCCAATGATATTGAACGACTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004365XLOC_004365Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007699-exon-sc0000079-1491911889:131171..131360TCONS_00007699-exon-sc0000079-1491911889:131171..131360Clytia hemisphaericaexon
TCONS_00007699-exon-sc0000079-1510915933:131171..131360TCONS_00007699-exon-sc0000079-1510915933:131171..131360Clytia hemisphaericaexon
TCONS_00007699-exon-sc0000079-1575043694:131171..131360TCONS_00007699-exon-sc0000079-1575043694:131171..131360Clytia hemisphaericaexon
TCONS_00007699-exon-sc0000079-1491911889:131641..131763TCONS_00007699-exon-sc0000079-1491911889:131641..131763Clytia hemisphaericaexon
TCONS_00007699-exon-sc0000079-1510915933:131641..131763TCONS_00007699-exon-sc0000079-1510915933:131641..131763Clytia hemisphaericaexon
TCONS_00007699-exon-sc0000079-1575043694:131641..131763TCONS_00007699-exon-sc0000079-1575043694:131641..131763Clytia hemisphaericaexon
TCONS_00007699-exon-sc0000079-1491911889:133385..133831TCONS_00007699-exon-sc0000079-1491911889:133385..133831Clytia hemisphaericaexon
TCONS_00007699-exon-sc0000079-1510915933:133385..133831TCONS_00007699-exon-sc0000079-1510915933:133385..133831Clytia hemisphaericaexon
TCONS_00007699-exon-sc0000079-1575043694:133385..133831TCONS_00007699-exon-sc0000079-1575043694:133385..133831Clytia hemisphaericaexon
TCONS_00007699-exon-sc0000079-1491911889:134067..134276TCONS_00007699-exon-sc0000079-1491911889:134067..134276Clytia hemisphaericaexon
TCONS_00007699-exon-sc0000079-1510915933:134067..134276TCONS_00007699-exon-sc0000079-1510915933:134067..134276Clytia hemisphaericaexon
TCONS_00007699-exon-sc0000079-1575043694:134067..134276TCONS_00007699-exon-sc0000079-1575043694:134067..134276Clytia hemisphaericaexon
TCONS_00007699-exon-sc0000079-1491911889:134746..135109TCONS_00007699-exon-sc0000079-1491911889:134746..135109Clytia hemisphaericaexon
TCONS_00007699-exon-sc0000079-1510915933:134746..135109TCONS_00007699-exon-sc0000079-1510915933:134746..135109Clytia hemisphaericaexon
TCONS_00007699-exon-sc0000079-1575043694:134746..135109TCONS_00007699-exon-sc0000079-1575043694:134746..135109Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:131171..135109 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.214938	0.569355	0.321911	1.1606	2.09902	0.0798376	260.677	266.965	2.41469	9.45063	9.37987	9.61083	808.858	598.741	75.0539	106.369	80.2001	127.128	100.123	129.125	0	0	0	0.085006
Blast
[Close]
BLAST of TCONS_00007699 vs. Swiss-Prot (Human)
Match: CTRL (Chymotrypsin-like protease CTRL-1 OS=Homo sapiens GN=CTRL PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 7.457e-52
Identity = 104/251 (41.43%), Postives = 150/251 (59.76%), Query Frame = 1 
Query:  565 CGRPQV--AMS---RVVGGKDAKAHSWPWQIGLHRNGGF-MCGGSIINSRWVVTAAHCVHRRSARDFKVKLGDHDRR-RSEGEQFIQVSKIITHQGYQNSRLNNDIALLQLATPAKFGRNVQPVCLPNQGDSPQVGSKCYITGWGKIRHPG-YSHTILQQLAMKIQSKSTCSRQNAKYAPITDQMLCAANTDVSANQSGCHGDSGGPFVCQNSNGSWTLHGAVSWGSPRCDIKDAFTVFARVGQFRNWIEQ 1293
            CG P +  A+S   R+V G++A   SWPWQ+ L  + GF  CGGS+I+  WVVTAAHC +    R F V LG++DR   +E  Q + VS+ ITH  + ++ +NND+ LL+LA+PA++   + PVCL +  ++   G  C  TGWG++   G  +   LQQ+A+ + + + C +     + ITD M+CA      A  S C GDSGGP VCQ  N +W L G VSWG+  C+++ A  V+ RV +F  WI Q
Sbjct:   19 CGIPAIKPALSFSQRIVNGENAVLGSWPWQVSLQDSSGFHFCGGSLISQSWVVTAAHC-NVSPGRHFVV-LGEYDRSSNAEPLQVLSVSRAITHPSWNSTTMNNDVTLLKLASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPAHLQQVALPLVTVNQCRQYWG--SSITDSMICAGG----AGASSCQGDSGGPLVCQKGN-TWVLIGIVSWGTKNCNVR-APAVYTRVSKFSTWINQ 259
The following BLAST results are available for this feature:
BLAST of TCONS_00007699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRL7.457e-5241.43Chymotrypsin-like protease CTRL-1 OS=Homo sapiens ... [more]
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