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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007680 ID=TCONS_00007680|Name=TCONS_00007680|organism=Clytia hemisphaerica|type=transcript|length=1493bp GGTTGTAGTATACTTACTCTGTTGGTCATATAGTATGCGATGCTACCATT TGACAACTTTATGTAATTTCCTTTTctgttttcaaaaacattcacagtga aaaaaaaacaaaaaatggcaacAAATGTGACATATTTTTTCACACCTTTG GTTTTATTGTTGATACCGGAGGACTGTCATGATGAGTTCTTTgtgaaatt caacttttttgatgTGCCATGTTTGAAGATAGCCATCAGCAAAGGATTGG GATATGCAATCATCTTGGGAGCTGTTGTTGTGAAAGTGCCTCAGATCATG AAGATGTTGAAAGCCAAAAGTGGTGCCGGTGTTAGCATTGCATCATTGTT CTTTGAAATGACAGCAATCACCTTTACTATGGCATATTCTGTCCATAAAA ACTTTCCTTTCAGTTCATGGGGTGAGACGTTTTTCATGTGCATTCAAGAT ATTATTATCACTCTACTTACGTTTATCTATGGTGGAAGCACTGTGAAAGC TCTTTTGTTTGCCCCTATCTACATTGGTATAAATTATGCCCTATGCACAC CTGCTATTACTCCATTTGCAATTATTGTTAAATTGCAAGAGTTTAATTTG GTTGTTCTTCTCCTCAGCAGattcATTCAAATTTGGGCCAACTTTTCTAG CGGACACACTGGTCAACTCTCTGTCATCTCACAAAGTTTGATTGCATTTG GAAGCTTGGCACGTGTTTTCACCACAATTCAGGAAACCGGTGATATGTTG ATGACATCTCAATTTATTTTAGCTTGCTCTCTTAATTGTATGATTCTTGG TCAAATCTTCTGGTACTGGAATGTGGCCCCAGAGAAGGCAAAGAAAGAGT AAATTAAAGGGCTATTAaatgttttatgatttttttttcattgttagCAA GAGTTATTACATAATACCATTGGTTCAAACCTTATCATAGTAATATTATT TAAGAAGGAAGAGTTGAGGTAAAATTCATTGTTTGACCTGGTTTGACTCT TGAAGAGGTTAGGATTGATCATCAAATTGCAATTGCAAATTAGTCTAAAA TCACCTTTCCGAAAAGTACAGTTTTCGTCAAATATAAAGGAAATATATAG AGGATTCGAAGAATTGTTTGTAATcaatctggtctgcaaaatatatgaaa aaatacaatttttaccATTTAAGATTATATACTTTTTACTATTTGAAAAT GAGGTTTGCTCTTGTCACGTGATCTGATTTATTTGTAATTgttaaaatat tgtttttcattttgaacgACTTTTAGTTATGTTTTGTATGTTTATGTTGG GAATTGTCTAAAATTGTACCAGTTGCTTATATCTTTATCAAGTTAAATAT TATTGTATTACTTATACTGAAATTTTAGGAAATAGAAATTTTGCaagtga atttgaaaaatttattttcttaatggcatgaagTAAGGGAAATTAAGTCT TTGCTTTGACAGCTCGAGGGATCCAAATTTTGATAGATCTTAA Run BLAST on NCBI protein sequence of TCONS_00007680-protein >TCONS_00007680-protein ID=TCONS_00007680-protein|Name=TCONS_00007680-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MATNVTYFFTPLVLLLIPEDCHDEFFVKFNFFDVPCLKIAISKGLGYAII LGAVVVKVPQIMKMLKAKSGAGVSIASLFFEMTAITFTMAYSVHKNFPFS SWGETFFMCIQDIIITLLTFIYGGSTVKALLFAPIYIGINYALCTPAITP FAIIVKLQEFNLVVLLLSRFIQIWANFSSGHTGQLSVISQSLIAFGSLAR VFTTIQETGDMLMTSQFILACSLNCMILGQIFWYWNVAPEKAKKE Run BLAST on NCBI transcript from alignment at sc0000079:9784..12610+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007680 ID=TCONS_00007680|Name=TCONS_00007680|organism=Clytia hemisphaerica|type=transcript|length=2827bp|location=Sequence derived from alignment at sc0000079:9784..12610+ (Clytia hemisphaerica) GGTTGTAGTATACTTACTCTGTTGGTCATATAGTATGCGATGCTACCATT
TGACAACTTTATGTAATTTCCTTTTctgttttcaaaaacattcacagtga
aaaaaaaacaaaaaatggcaacAAATGTGACATATTTTTTCACACCTTTG
GTTTTATTGTTGATACCGGAGGACTGTCATGATGAGTTCTTTgtgaaatt
caacttttttgatgGTAAGCTTTACGTCAAAACGTATTatttgtattatt
tttttcttgttatttATAATCCAAAATATGATTAATTTGTAATGCATTTT
ATTATCAGATACCACTGGTAGTAAATATAATTTCTACTTACTGCACTCGG
ATAAGTCTTTTAACACTGCTGTAATATGTAATTTGCCTTCATTTTGTCAT
CTGTTTTTTCTCTTTGCATCTATATTTCTTACTCTCCATTCCCTCTAGTG
CCATGTTTGAAGATAGCCATCAGCAAAGGATTGGGATATGCAATCATCTT
GGGAGCTGTTGTTGGTGAGGATCTTTCTTATAACAGTGTTGCAACTTTCA
GTCTGTGGATGAAAATCTGTCCAGTTGAGATAAAAACACACAGTTTTCGT
CTTCCCTGggtttttggttcaaatgaGAATCTACTACTAAGGCTTCCATC
CATATCCACAAAACCTTGCTGTAACACTGTGATGAAACTGTTTCGACTAG
CAACAAAAAGAGCGAATTTAGGTCATTTTTCACTTGACTTGAATGATATG
TTTCTCCAAATGAACAAGAAGTCAAAGCAGCATGAAGCAGGCTCAGCGAC
CTGTTTGTTCGCAATGCCTACACTTCGTACCAGAAGACATCATTTCTTCC
TTAATCAACTTAAATTGATAAAGCACTGCTCCTTCAAAAACAGACAGCga
catgctaatgaaaggcctgATGCTGGGCGCATCGTACCTCATCATACTTT
AAGGACAAAACTCTGTGTTTATCATTTTAGTGAAAGTGCCTCAGATCATG
AAGATGTTGAAAGCCAAAAGTGGTGCCGGTGTTAGCATTGCATCATTGTT
CTTTGAAATGACAGCAATCACCTTTACTATGGCATATTCTGTCCATAAAA
ACTTTCCTTTCAGGTATTTACTTTGCAGAAATTATAATGTAATGGCAAAA
ACCCTTAAATCATTATTTGGTATCATATTAAGTTCTCCTAAGCTCACATT
TAGTTTTGTATTCAATCACAACACAACACAATCTACTGTTTCATATTATC
ATTCTagtttcaaaatcataaaaatgaagCTTGCAGAAAAGATCACATCT
CCACTTTATTAAAtagtttgaataaaaaaaatttaagaattaaTAAGGAC
TATAGTAGGCCAAACGTTGCAAACCTTCTGATTatctttttttaacaatt
ttgtttCAGTTCATGGGGTGAGACGTTTTTCATGTGCATTCAAGATATTA
TTATCACTCTACTTACGTTTATCTATGGTGGAAGCACTGTGAAAGCTCTT
TTGTTTGCCCCTATCTACATTGGTATAAATTATGCCCTATGCACACCTGC
TATTACTCCATTTGCAATTATTGTTAAATTGCAAGAGTTTAATTTGGTTG
TTCTTCTCCTCAGCAGagtaagtttgaaaatcattttaaagTTGTCTACA
GCCCCTAAAAGATTAcctaaaaggaagaaaaattgactgaaagaaaatat
tgatttatAGATTTAACAAAAATCCATCAAGTTCAAGTTTGAAATTCCAG
TAaaacaatttaatttatttcgtgcaatacctcaaatttttgctatttta
tgccttaaaacaggtttttttgttCATAAGAATTCTacattgaaaaaaga
atttgaagaagtttgaaaaattgatcTTGATATAAACCATTATTAAACTT
TTATACAGCTTTCATGCAATCTTTCATTAAAAACGaccaatttcttcttt
ttcagttcATTCAAATTTGGGCCAACTTTTCTAGCGGACACACTGGTCAA
CTCTCTGTCATCTCACAAAGTTTGATTGCATTTGGAAGCTTGGCACGTGT
TTTCACCACAATTCAGGAAACCGGTGATATGTTGATGACATCTCAATTTA
TTTTAGCTTGCTCTCTTAATTGTATGATTCTTGGTCAAATCTTCTGGTAC
TGGAATGTGGCCCCAGAGAAGGCAAAGAAAGAGTAAATTAAAGGGCTATT
AaatgttttatgatttttttttcattgttagCAAGAGTTATTACATAATA
CCATTGGTTCAAACCTTATCATAGTAATATTATTTAAGAAGGAAGAGTTG
AGGTAAAATTCATTGTTTGACCTGGTTTGACTCTTGAAGAGGTTAGGATT
GATCATCAAATTGCAATTGCAAATTAGTCTAAAATCACCTTTCCGAAAAG
TACAGTTTTCGTCAAATATAAAGGAAATATATAGAGGATTCGAAGAATTG
TTTGTAATcaatctggtctgcaaaatatatgaaaaaatacaatttttacc
ATTTAAGATTATATACTTTTTACTATTTGAAAATGAGGTTTGCTCTTGTC
ACGTGATCTGATTTATTTGTAATTgttaaaatattgtttttcattttgaa
cgACTTTTAGTTATGTTTTGTATGTTTATGTTGGGAATTGTCTAAAATTG
TACCAGTTGCTTATATCTTTATCAAGTTAAATATTATTGTATTACTTATA
CTGAAATTTTAGGAAATAGAAATTTTGCaagtgaatttgaaaaatttatt
ttcttaatggcatgaagTAAGGGAAATTAAGTCTTTGCTTTGACAGCTCG
AGGGATCCAAATTTTGATAGATCTTAA Coding sequence (CDS) from alignment at sc0000079:9784..12610+ >TCONS_00007680 ID=TCONS_00007680|Name=TCONS_00007680|organism=Clytia hemisphaerica|type=CDS|length=3690bp|location=Sequence derived from alignment at sc0000079:9784..12610+ (Clytia hemisphaerica) atggcaacAAATGTGACATATTTTTTCACACCTTTGGTTTTATTGTTGAT ACCGGAGGACTGTCATGATGAGTTCTTTgtgaaattcaacttttttgatg TGCCATGTTTGAAGATAGCCATCAGCAAAGGATTGGGATATGCAATCATC TTGGGAGCTGTTGTTGTGAAAGTGCCTCAGATCATGAAGATGTTGAAAGC CAAAAGTGGTGCCGGTGTTAGCATTGCATCATTGTTCTTTGAAATGACAG CAATCACCTTTACTATGGCATATTCTGTCCATAAAAACTTTCCTTTCAGT TCATGGGGTGAGACGTTTTTCATGTGCATTCAAGATATTATTATCACTCT ACTTACGTTTATCTATGGTGGAAGCACTGTGAAAGCTCTTTTGTTTGCCC CTATCTACATTGGTATAAATTATGCCCTATGCACACCTGCTATTACTCCA TTTGCAATTATTGTTAAATTGCAAGAGTTTAATTTGGTTGTTCTTCTCCT CAGCAGattcATTCAAATTTGGGCCAACTTTTCTAGCGGACACACTGGTC AACTCTCTGTCATCTCACAAAGTTTGATTGCATTTGGAAGCTTGGCACGT GTTTTCACCACAATTCAGGAAACCGGTGATATGTTGATGACATCTCAATT TATTTTAGCTTGCTCTCTTAATTGTATGATTCTTGGTCAAATCTTCTGGT ACTGGAATGTGGCCCCAGAGAAGGCAAAGAAAGAGTAAatggcaacAAAT GTGACATATTTTTTCACACCTTTGGTTTTATTGTTGATACCGGAGGACTG TCATGATGAGTTCTTTgtgaaattcaacttttttgatgTGCCATGTTTGA AGATAGCCATCAGCAAAGGATTGGGATATGCAATCATCTTGGGAGCTGTT GTTGTGAAAGTGCCTCAGATCATGAAGATGTTGAAAGCCAAAAGTGGTGC CGGTGTTAGCATTGCATCATTGTTCTTTGAAATGACAGCAATCACCTTTA CTATGGCATATTCTGTCCATAAAAACTTTCCTTTCAGTTCATGGGGTGAG ACGTTTTTCATGTGCATTCAAGATATTATTATCACTCTACTTACGTTTAT CTATGGTGGAAGCACTGTGAAAGCTCTTTTGTTTGCCCCTATCTACATTG GTATAAATTATGCCCTATGCACACCTGCTATTACTCCATTTGCAATTATT GTTAAATTGCAAGAGTTTAATTTGGTTGTTCTTCTCCTCAGCAGattcAT TCAAATTTGGGCCAACTTTTCTAGCGGACACACTGGTCAACTCTCTGTCA TCTCACAAAGTTTGATTGCATTTGGAAGCTTGGCACGTGTTTTCACCACA ATTCAGGAAACCGGTGATATGTTGATGACATCTCAATTTATTTTAGCTTG CTCTCTTAATTGTATGATTCTTGGTCAAATCTTCTGGTACTGGAATGTGG CCCCAGAGAAGGCAAAGAAAGAGTAAatggcaacAAATGTGACATATTTT TTCACACCTTTGGTTTTATTGTTGATACCGGAGGACTGTCATGATGAGTT CTTTgtgaaattcaacttttttgatgTGCCATGTTTGAAGATAGCCATCA GCAAAGGATTGGGATATGCAATCATCTTGGGAGCTGTTGTTGTGAAAGTG CCTCAGATCATGAAGATGTTGAAAGCCAAAAGTGGTGCCGGTGTTAGCAT TGCATCATTGTTCTTTGAAATGACAGCAATCACCTTTACTATGGCATATT CTGTCCATAAAAACTTTCCTTTCAGTTCATGGGGTGAGACGTTTTTCATG TGCATTCAAGATATTATTATCACTCTACTTACGTTTATCTATGGTGGAAG CACTGTGAAAGCTCTTTTGTTTGCCCCTATCTACATTGGTATAAATTATG CCCTATGCACACCTGCTATTACTCCATTTGCAATTATTGTTAAATTGCAA GAGTTTAATTTGGTTGTTCTTCTCCTCAGCAGattcATTCAAATTTGGGC CAACTTTTCTAGCGGACACACTGGTCAACTCTCTGTCATCTCACAAAGTT TGATTGCATTTGGAAGCTTGGCACGTGTTTTCACCACAATTCAGGAAACC GGTGATATGTTGATGACATCTCAATTTATTTTAGCTTGCTCTCTTAATTG TATGATTCTTGGTCAAATCTTCTGGTACTGGAATGTGGCCCCAGAGAAGG CAAAGAAAGAGTAAatggcaacAAATGTGACATATTTTTTCACACCTTTG GTTTTATTGTTGATACCGGAGGACTGTCATGATGAGTTCTTTgtgaaatt caacttttttgatgTGCCATGTTTGAAGATAGCCATCAGCAAAGGATTGG GATATGCAATCATCTTGGGAGCTGTTGTTGTGAAAGTGCCTCAGATCATG AAGATGTTGAAAGCCAAAAGTGGTGCCGGTGTTAGCATTGCATCATTGTT CTTTGAAATGACAGCAATCACCTTTACTATGGCATATTCTGTCCATAAAA ACTTTCCTTTCAGTTCATGGGGTGAGACGTTTTTCATGTGCATTCAAGAT ATTATTATCACTCTACTTACGTTTATCTATGGTGGAAGCACTGTGAAAGC TCTTTTGTTTGCCCCTATCTACATTGGTATAAATTATGCCCTATGCACAC CTGCTATTACTCCATTTGCAATTATTGTTAAATTGCAAGAGTTTAATTTG GTTGTTCTTCTCCTCAGCAGattcATTCAAATTTGGGCCAACTTTTCTAG CGGACACACTGGTCAACTCTCTGTCATCTCACAAAGTTTGATTGCATTTG GAAGCTTGGCACGTGTTTTCACCACAATTCAGGAAACCGGTGATATGTTG ATGACATCTCAATTTATTTTAGCTTGCTCTCTTAATTGTATGATTCTTGG TCAAATCTTCTGGTACTGGAATGTGGCCCCAGAGAAGGCAAAGAAAGAGT AAatggcaacAAATGTGACATATTTTTTCACACCTTTGGTTTTATTGTTG ATACCGGAGGACTGTCATGATGAGTTCTTTgtgaaattcaacttttttga tgTGCCATGTTTGAAGATAGCCATCAGCAAAGGATTGGGATATGCAATCA TCTTGGGAGCTGTTGTTGTGAAAGTGCCTCAGATCATGAAGATGTTGAAA GCCAAAAGTGGTGCCGGTGTTAGCATTGCATCATTGTTCTTTGAAATGAC AGCAATCACCTTTACTATGGCATATTCTGTCCATAAAAACTTTCCTTTCA GTTCATGGGGTGAGACGTTTTTCATGTGCATTCAAGATATTATTATCACT CTACTTACGTTTATCTATGGTGGAAGCACTGTGAAAGCTCTTTTGTTTGC CCCTATCTACATTGGTATAAATTATGCCCTATGCACACCTGCTATTACTC CATTTGCAATTATTGTTAAATTGCAAGAGTTTAATTTGGTTGTTCTTCTC CTCAGCAGattcATTCAAATTTGGGCCAACTTTTCTAGCGGACACACTGG TCAACTCTCTGTCATCTCACAAAGTTTGATTGCATTTGGAAGCTTGGCAC GTGTTTTCACCACAATTCAGGAAACCGGTGATATGTTGATGACATCTCAA TTTATTTTAGCTTGCTCTCTTAATTGTATGATTCTTGGTCAAATCTTCTG GTACTGGAATGTGGCCCCAGAGAAGGCAAAGAAAGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007680-exon-sc0000079-1491911889:9784..9997 | TCONS_00007680-exon-sc0000079-1491911889:9784..9997 | Clytia hemisphaerica | exon |
TCONS_00007680-exon-sc0000079-1510915933:9784..9997 | TCONS_00007680-exon-sc0000079-1510915933:9784..9997 | Clytia hemisphaerica | exon |
TCONS_00007680-exon-sc0000079-1575043694:9784..9997 | TCONS_00007680-exon-sc0000079-1575043694:9784..9997 | Clytia hemisphaerica | exon |
TCONS_00007680-exon-sc0000079-1491911889:10232..10297 | TCONS_00007680-exon-sc0000079-1491911889:10232..10297 | Clytia hemisphaerica | exon |
TCONS_00007680-exon-sc0000079-1510915933:10232..10297 | TCONS_00007680-exon-sc0000079-1510915933:10232..10297 | Clytia hemisphaerica | exon |
TCONS_00007680-exon-sc0000079-1575043694:10232..10297 | TCONS_00007680-exon-sc0000079-1575043694:10232..10297 | Clytia hemisphaerica | exon |
TCONS_00007680-exon-sc0000079-1491911889:10764..10896 | TCONS_00007680-exon-sc0000079-1491911889:10764..10896 | Clytia hemisphaerica | exon |
TCONS_00007680-exon-sc0000079-1510915933:10764..10896 | TCONS_00007680-exon-sc0000079-1510915933:10764..10896 | Clytia hemisphaerica | exon |
TCONS_00007680-exon-sc0000079-1575043694:10764..10896 | TCONS_00007680-exon-sc0000079-1575043694:10764..10896 | Clytia hemisphaerica | exon |
TCONS_00007680-exon-sc0000079-1491911889:11193..11400 | TCONS_00007680-exon-sc0000079-1491911889:11193..11400 | Clytia hemisphaerica | exon |
TCONS_00007680-exon-sc0000079-1510915933:11193..11400 | TCONS_00007680-exon-sc0000079-1510915933:11193..11400 | Clytia hemisphaerica | exon |
TCONS_00007680-exon-sc0000079-1575043694:11193..11400 | TCONS_00007680-exon-sc0000079-1575043694:11193..11400 | Clytia hemisphaerica | exon |
TCONS_00007680-exon-sc0000079-1491911889:11739..12610 | TCONS_00007680-exon-sc0000079-1491911889:11739..12610 | Clytia hemisphaerica | exon |
TCONS_00007680-exon-sc0000079-1510915933:11739..12610 | TCONS_00007680-exon-sc0000079-1510915933:11739..12610 | Clytia hemisphaerica | exon |
TCONS_00007680-exon-sc0000079-1575043694:11739..12610 | TCONS_00007680-exon-sc0000079-1575043694:11739..12610 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000079 | supercontig | sc0000079:9784..12610 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00007680 vs. Swiss-Prot (Human)
Match: MPU1 (Mannose-P-dolichol utilization defect 1 protein OS=Homo sapiens GN=MPDU1 PE=1 SV=2) HSP 1 Score: 207.608 bits (527), Expect = 1.340e-62 Identity = 104/234 (44.44%), Postives = 152/234 (64.96%), Query Frame = 1
Query: 148 LVLLLIPEDCHDEFFVKFNFFDVPCLKIAISKGLGYAIILGAVVVKVPQIMKMLKAKSGAGVSIASLFFEMTAITFTMAYSVHKNFPFSSWGETFFMCIQDIIITLLTFIYGGSTVKALLFAPIYIGINYALCTPAITPFAIIVKLQEFNLVVLLLSRFIQIWANFSSGHTGQLSVISQSLIAFGSLARVFTTIQETGDMLMTSQFILACSLNCMILGQIFWYWNVAPEKAKKE 849
LV +L+PE C+D+ FV+++ VPCLKI +SKGLG I+ G+++VK+PQ+ K+L AKS G+S+ S+ E+ A+T TM YS+ NFPFSSWGE F+ +Q I I L Y G TVK + F Y G+ + +TP ++ LQ N+ +++ R +Q N+ +GHTGQLS I+ L+ GSLAR+FT+IQETGD LM F+++ N +I Q+ +YWN P +K+
Sbjct: 13 LVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLPQVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLVMHYRGQTVKGVAFLACY-GLVLLVLLSPLTPLTVVTLLQASNVPAVVVGRLLQAATNYHNGHTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIAAQLLFYWNAKPPHKQKK 245
The following BLAST results are available for this feature:
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