TCONS_00007627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007627
Unique NameTCONS_00007627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length795

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007627 ID=TCONS_00007627|Name=TCONS_00007627|organism=Clytia hemisphaerica|type=transcript|length=795bp
tttagtgataaatatacaaaaaatcagaacagcaatattttataaaacat
GTTTGGTGAGAAAGCATTTGAATTGATCAAAGAATTGAAAAGATCTACTG
ATGGAAACCTACCAGCATTTAATGAGGACTTGGTACGTCAAGTGTTGGAT
GAAATGAGGGttttattcgaagaaaatcaaaaagaagtcacAGCGTCCGT
GGAAGGAGAAGAAGGTTTATACTCAGGTGTTCAATTACGTCACGAAAGTT
TGGAGCGAAACAAAAGATGTCTGCTAGCATACATATACAACCGAATGATG
AGGATAAAACAATACCGTTGGGATATTGGGAGTGTCCTCCCACAAGACGT
CAAACTGAATCTCGTCGAACAAGAGgtGAAATGGTTTACAGAGTACAACA
AATCGCTAGCAAAATATATGATGTCGACTGCTGGTGGTCATGGTATCGAC
TTAACACAGAATATGACTCCACCAAAATCACTTTACATTGAGGTGCGTTG
TTTGGTGGATTACGGAGAATTCGAAACGGAAGATGGAACCGTTGTCATCC
TCAAAAAGAATAGCCAGcatttcctCCCAACAACGCAATGTGAACATTTA
GTACGTCAAGGAATTCTTGAACATATTTTAGCataatttttctataagaa
aattTAGATTTAGAATTTTGTGTAAATATTTATATCGGAAAGCAAGAGAA
TATTTATTAAATGGTTTTTAAACGTCTTGtgtgtgatttcttttttttgg
ggGTGTAGGGTTAAATTCAGGATAGTAAGAGATAGCAGAGGGGCA
Run BLAST on NCBI

protein sequence of TCONS_00007627-protein

>TCONS_00007627-protein ID=TCONS_00007627-protein|Name=TCONS_00007627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MFGEKAFELIKELKRSTDGNLPAFNEDLVRQVLDEMRVLFEENQKEVTAS
VEGEEGLYSGVQLRHESLERNKRCLLAYIYNRMMRIKQYRWDIGSVLPQD
VKLNLVEQEVKWFTEYNKSLAKYMMSTAGGHGIDLTQNMTPPKSLYIEVR
CLVDYGEFETEDGTVVILKKNSQHFLPTTQCEHLVRQGILEHILA
Run BLAST on NCBI

transcript from alignment at sc0000078:530030..540146-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007627 ID=TCONS_00007627|Name=TCONS_00007627|organism=Clytia hemisphaerica|type=transcript|length=10117bp|location=Sequence derived from alignment at sc0000078:530030..540146- (Clytia hemisphaerica)
TTTAGTGATAAATATACAAAAAATCAGAACAGCAATATTTTATAAAACAT
GTTTGGTGAGAAAGCATTTGAATTGATCAAAGAATTGAAAAGATCTACTG
ATGGAAACCTACCAGCATTTAATGTAAGAATCATTATATTCAATGTATAC
GATAATCTCAAGCTTCAAAATGAGATAATCACTTTTTTAATCTTTGTTCA
AATCAGTCTTCATTGTGCAGATGTCAATTTTAAAATCATTTCATAACTGT
GCGAAAGGGGGTTAGGTTCCACTTTACTATGATTGACATAAAGTAGTTCA
ATTTATGGATTGGTACCATCATTGACGATACTGACGTCATCATTCAACCC
CAGTACACTTGAACCCAGCCTTCTTTTAGATCTAGGGCTGATATAGCTAA
GAATATTGGAACAGGTTTTCCTTTTGAACTACAGTTGACGCTCTCGCGCT
CTCTAACTCGGCGTTTTACTTTTTGGTACGCTCCATTATTCGATGGTATT
GAAAGTCACCATCAACAAGAAACTCTTATAAACGACACTAAACTATTCGA
TACACTCTATTTCGATAAAAAACAAATTCCTCTTGAAAATCGAATTAGAG
AGCGTCAACTGTATATAGGTTAATTCGAATATTTCTTTCTTTACCAGGAG
GACTTGGTACGTCAAGTGTTGGATGAAATGAGGGTTTTATTCGAAGAAAA
TCAAAAAGAAGTGTAAGTAATATACCTGGGTTGGTAGCTTTTTTTTTTCA
AAAGCTGAACCCACAGAACAGCTTGTTCAATATATACAATACAAGCAATG
ATGAGCTTGAATTGTACATTTTTGGTGCTCATAATAAAAAGCACAGAATT
TTGTTTTCGCATTGACAAGATGGCTAGTGGTCTAAGTTTTTGGAGGTTTT
TGCGTCTAGACGGATGGTCGTAATGACAGCTTGATATGTCCCGAAAATTC
ATTCCGACTGTGAAGCAGTCTTTTCTCACCCACTAGTTGATAGAAACACT
TAAAGTTTTTTTTTTTCAATTTCAGCACAGCGTCCGTGGAAGGAGAAGAA
GGTTTATACTCAGGTGTTCAATTACGTCACGAAAGTTTGGAGCGAAACAA
AAGATGTCTGCTAGCATACATGTAAGGTCAAAATGTGTCTATACTGAGCA
AGAGGCCTTTATCTGGTTATTGAATCAAGTTTCGATATGCCTAAGGGTTT
GTTTATTTTAAACACTGGTAATCTTAGATTTGTCCAAATTTGTTGTTTTT
TTCCCAATACAGGGAAGCGTAAATGAGTCAATTACAGTCAACCTACTGAC
TCAAACCTGTACTGCTCGAATGGCTCCACACCNTTTTCTTTACCAGGAGG
ACTTGGTACGTCAAGTGTTGGATGAAATGAGGGTTTTATTCGAAGAAAAT
CAAAAAGAAGTGTAAGTAATATACCTGGGTTGGTAGCATTTTTTTTTTTT
CAAAAGCTGACCCCACAGAACAGCTTGTTCAATATATACAATACAAGCAA
TGATGAGCTTGAATTGTACATTTTTGGTGCTCATAATAAAAAGCACAGAA
TTTTGTTTTCGCATTGACAAGATGGCTAGTGGTCTAAGTTTTTGGAGGTT
TTTGCGTCTAGACGGATGGTCGTAATGACAGCTTGATATGTCCCGAAAAT
TCATTTCGACTGTGAAGCAGTCTTTTCTCACCCACTAGTTAATAGAAACA
CTTAAAGTTTTTTTTTCAATTTCAGCACAGCGTCCGTGGAAGGGGAAGAA
GGTTTATACTCAGGTGTTCAATTACGTCACGAAAGTTTGGAGCGAAACAA
AAGATGTCTGCTAGCATACATGTAAGGTCAAAATGTGTCTATACTAAGCA
AGAGGCCTTTATCTGGTTATTGAATCAAGTTTCGATATACCTAAGGGTTT
GTTTATTTTAAACACTGGTCATCTTAGATTTGTCCAAATTTGTTGTTTTT
TCCAATACAGGGAAGCGTAAATGAGTCAATTACAGTCAACCTACTGACTC
GAACCTGTACAGCTCGAATGTCTCCACACCTCAGTGGGCTTTTCTGTTTC
CCTGAGGTCTTCGTGTCATGACAATTCGATATGAAGATTCTTTTTTATAC
AATTTTCTCTGCGTTTTTCACCACCAGATACAACCGAATGATGAGGATAA
AACAATACCGTTGGGATATTGGGAGTGTCCTCCCACAAGACGTCAAACTG
AATCTCGTCGAACAAGAGGTATAGGGATATAGGCAATACTCATGGGGAAC
GCTAATTCGTCCTATTGCTGCTATTGCTGAGAATTTGATTGAGTAGATAT
TTATTATTCATGTAACCTCTCCCTTCTCCACAGGCTCAAAGCTTGATCCA
CCCCTTTTAGGAAAGTTCTTAATACATCAACTCCTTTCGCCAAAAAGAAA
TTCAGGGTTTGAGCTTGTGCCTGTACTATGGAGCGATCAATGAATTCACT
CAATTCATTAAGTGTCGCTAGCGTCATATGAAATCGTTCACTTTTTTTGG
TTCTGTACCGGTGGGTTTAGACCTAAGAGCACTGTCTTCCATGCCTCCAT
GTTTTTTACCTCGCCCGTTTTTTACCCGGCCTGAATAAAAATTTAGAATT
TACATTTTTTACTTGGTTTGGGTGTATTTAATCTGAAGTGGCATTTAATT
GGTCAATGATGCAAAAGAAAGGAATAGCAGTTTCTTAATTGAAGGATAGG
TTTAAAAAGACCATAAAACTCAAACCATCCTCTGCAGTACATGCAAAATA
TTTTATATCTTGGATTTCGTTTTTTCTTTTTCCAGGTGAAATGGTTTACA
GAGTACAACAAATCGCTAGCAAAATATATGATGTCGACTGCTGGTGGTCA
TGGTATCGACTTAACACAGGTGTGTATCTACAAGTTTACCTCTACCGCTT
GACAGATTTGGGGTTAAATATATGTCAAATGTCTGAATAGCAGACCTCTA
TAGATGTATTAACTGTAAAAGAAACTCTTTTTGCTGTGAAAAGAAGCCTA
GGAATTAAATTTCTCAAATATATCAACTGATTGACTAGTCTGATTTGCAG
ACCATTAGATATGCTTCCTATAAGACATTTTTTTCGTTAGAAGATACGCA
GAAGCATACTTCGGGATTGATAGAGAACGATGGTCAGTTTTAAGTGCAGT
GTTTTTTACATTAAGGTTCACAATTTGACGATGAGGTTTTTTTCTTTCTG
TTTCAGAATATGACTCCACCAAAATCACTTTACATTGAGGTACGATCTTT
TGTTTCTATTTTTTTTGTTTCTTCTTTTCCCCTCCATGTAAAAAAAAATT
TCCAACGACACATTAACGCTGATAATTTGATTTTAATATCTGGGGATTTT
AAGGAATTTTTTACCAGACCGCGTCACGGATTTTGAAGCGGGAGACTTGA
ACCCTAGCCCTCGTTTTCAGGGATTTCGGGCAAATCTGAAATATTTTCAG
GCTTAAGCGTCTTGGAATGCAGGACATAAAAGTTCGGCTATCATTCCCCT
CCGATGGGAAATCGACACGCTTTAGTGTGGTGGCCACTATTCCATCGATC
CGCCATCGTAATATCAGATAAGGACGGTCGCGGATCCACCATTGAGATAA
CCTCCTAACTAGCACAGAACGCCAGCTTTGTTTCAACGTTCATATATAAC
GCCATTTGGGAGTTTGGGGTGTCAGAAGCAGCCGGCGGAGAGATTTTTTA
GAAAATATGTGTTTTTATCTTCTAGGACACCACATTTTATGACCTCCAAT
TTTCTTTTACAAATGATGTGTTCTAAAATCTAGAAAAAACATTTTGCCAA
GATATACTTTAAGATATTTGTTTTTTTCCACGAACCAAAGATGTGTTCTG
AAACCTTAGGGTTAATAGGCAACAAGATCACATCAATTTTCTCTTGATTA
TACCCCTGTCTTTTTAAAGGTTGTGTTCTGAAGCTTTCTAGGGTTACCTA
GACAACAAGAACAATTTTGATGACCTTGATTATACCCCTGTCTCGTCAGA
ACACATCATTATTTCTAGCTGAAACATACTCTCAGAACACATCGGAAAAA
AAGGTCGCTTCGCCGGCTGCTTTCGGGGTTTGTCCCATAAGCTAGAAAGG
GCTCGAATCAATTTAAAAGGCTAAGGGTAATTGTCCTAGAGGGTAATCGT
CCGGGTGCATTTCAGGAGCAAAGATCCCTAGTGACAATTTTCTGAGGGAG
GGGGCAATCCATTGAGTCTAAAACCCGAAGGGCTAGATTTCAAAATATGC
AGCCCTCTAAAACAAAGGAACCGCTAGATACAACCTGTCCTCGTGATCGC
GGCGCGTTCTAGGCTTGTTCTGTATGTGAAGTAAGTGTCTTCACTTTTTC
TTGCCTGGGAAGGGTTAGAGATTCTACTCTAGCCCTTCGGGTTTTAAACT
CAATGCTACAAACCCCCCCATTTAGGTTCTCTATGAAAAAGTAAAATGGT
ATCTACAACCTCGTGTACAATATTCTTCATGCATCACGTTTAACACATCG
TTGTACAGCAGATACCCCCCTGCTTGACCTCGTTATTTTATGGTCAATTT
TTCTCATTTTGAATATTATGCGAAATTTTCGACTTCCGAGTCGTCTTGTT
AATTTCGCCTAGCGAAAGTATTACAATCAGCTTTCGTGGGTCGTCGCGGG
TCGGAAAAAAAATTAGAAAACGAAAGTACTTGATACGGTGGACTAAAATT
AATTTACAAATTACACGCTCGTATAACCACGGACGATTTTCGTAGGTTTT
CTTTGGATTACGTCATATATCTTTGTGTCTTTAGCTTCACAGTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNTGATAGACGGTGATATACCTTTTGGATAGACGGTG
ACATACCTTTCGGTAATTAGTTCTTACAAAGTAAACAAGGGACGGCGCTC
AATATGAGCATGTTCATTTTTCCTATAAACATTTACTTTATAAGAATCAA
ATCAATAACTCTCGATAGACAGTGGTATACCTTTCAGATTAGTTTTTACA
AAGTAAACAAGGGACGGTGCTCAATATGAGCTTATTCATTTTTCTTATAA
GCATTTACTTTATAAGAATCAAATCAATAACTCTCGATAGACGGTGGTAT
ACCTTTCGGTAATTAGTTGTTACAAAGTAAACAAAGGACGGTGCACAATA
TAAGCATATTTATTTTTCTTATAAGCATATACTTTATAAGAATTAAATCA
ATAGCTCTTGATAGACGGTGACATACCTTTCGGTAATTAGTTGTTACAAA
GTAAACAAAGGACGGTGCACAATATAAGCATATTTATTTTTCTTATAAGC
ATATACTTTATAAGAATTAAATCAATAGCTCTTGATAGACGGTGACATAC
CTTTCGGTAATTAGTTCTTACAAAGTAAACAAGGGGACCGCGCTGCTCAA
TATGAGTATATTCATTTTTCTTATAAGCATTTACTCATAAGAATCAAATC
AAAAACTCTCGATAGACGATGATATACCTTTTGGTAATTAGTTCTTACAA
AGTAAACAAGGGATGACGCATGATATGAACATATTTATTTTTCTTGTAAG
CATATACTTTATAAGAATCAAATCAATAACTCTTGAAAGACGGTGATATA
CCTTTCGGTAATTAGTTCTTACAAAGTAAACAAGGGGACCGCGCTGCTCA
ATATGAGTATATGCATTTTTCTTATAAGCGTTTACTTTATAAGAATCAAA
TCAATAACTCTTGAAAGACGGTGATATACCTTTCGGTAATTAGTTCTTAC
AAAGTAAACAAGGGACGGAGCACAGTTTGAGCATATTCATTTTTCTTATA
AGCGTTTACTTTATAAGAATAAAATCAATAACTCTTGATAGACGGTGATA
TACCTTTCGGTAATTAGTTCTTACAAAGTAAACAAGGGATGGCGTGCAAT
ATGAGCATATTTACTTTTTATAAGCATATACTTTATAAGAGTTCTTAAAA
GTCAAACAACAATTGTTCTTAAATTGGTCTTATTTTTTAGTGATTTTAAG
CCTCGTTGTTCTTGTGAAATTGTTTCATCAAGGCTCGATGTAAAGTAGAT
CTCTACTTCTTGTTTTTCCCATGCAGTTCAAATTCTAGGCGAAATTTTCG
ACTTTAAGTCGTCTTGTTTTACTTCCTTTTGGACCTACCCCGGTGGGCTT
TAAACTCAACGGGATTGCCCCATTGTCCTAGGGGTAAATGTCCAAAATCG
TATTTTTAGAGCTTTTTCTTTATTGGAGTTGTGTGTATTTCGCACATCTT
ATCATGGACAATTTCGACCTTAATATGATGATCCATTCTGGACAATTTAC
CACCATCAAAGATGTATTTCTACTGTCTTTAGATAAGTCAGTCGTCATAG
TAGAGGCTACGTCGATGATATTGAAAGTCATCGTCAACAAAAAGCTCTCA
AACACCGCTCCTACCTTCGATATACTTTCTTGGTTTCGTTTGAATTCGGT
GAAAATCGAATTAGAGAGCGTCAACTATATTTTCTCATTTTTTGTTAGGT
GCGTTGTTTGGTGGATTACGGAGAATTCGAAACGGAAGATGGAACCGTTG
TCATCCTCAAAAAGAATAGCCAGGTAGGAAAGGTCAAATTGTACCTTTTA
AAATCTTCATACTTTTGCAAAATTTGTTTGAGAGTCCACTGAAATCTCGA
TTGTTTTCAACCCAAAGGTGAGAAGAGTGGTCTATTATTTTACCAAAAAA
AGGTATTATGAGTTTACGGATAAGAATTTTCTTTTGAATCAACAAAAGAT
TTTCATCATCAAACTCACAATATCCTGTCAAATATGTATAACTTCTTTTT
AGTGCACCCGGTGTAGTATCTAGGTTTGGTTCTAGCCTCTTATAACCTCA
AATAATATAACACTTGGTAATAAACTTTTCTTTTAAGAACATCCAAAAAA
ATTTTAAGCCTTAAAATGTTCTTAAATTGTTCTTTATTTCACCTTTTTAT
GGATATTTTATGTTTAATTTCCTAATAAATCGATTGTGATTTTAGAGTCC
GCAAAGCCTTGAATGTTTTTAACTTGTTCTTAATATTCTGCCCATTTAAG
CATTATTTTCTTATATACTGTAGTTTGTTCTCATAAAGAACTTGTAAACA
TAATGGAATTGGAAGGTAATGATTTTCTTTATTTTTCAGCATTTCCTCCC
AACAACGCAATGTGAACATTTAGTACGTCAAGGAATTCTTGAACATATTT
TAGCATAATTTTTCTATAAGAAAATTTAGATTTAGAATTTTGTGTAAATA
TTTATATCGGAAAGCAAGAGAATATTTATTAAATGGTTTTTAAACGTCTT
GTGTGTGATTTCTTTTTTTTGGGGGTGTAGGGTTAAATTCAGGATAGTAA
GAGATAGCAGAGGGGCA

Coding sequence (CDS) from alignment at sc0000078:530030..540146-

>TCONS_00007627 ID=TCONS_00007627|Name=TCONS_00007627|organism=Clytia hemisphaerica|type=CDS|length=5292bp|location=Sequence derived from alignment at sc0000078:530030..540146- (Clytia hemisphaerica)
CATTTCCTCCCAACAACGCAATGTGAACATTTAGTACGTCAAGGAATTCT
TGAACATATTTTAGCATAAGTGCGTTGTTTGGTGGATTACGGAGAATTCG
AAACGGAAGATGGAACCGTTGTCATCCTCAAAAAGAATAGCCAGAATATG
ACTCCACCAAAATCACTTTACATTGAGGTGAAATGGTTTACAGAGTACAA
CAAATCGCTAGCAAAATATATGATGTCGACTGCTGGTGGTCATGGTATCG
ACTTAACACAGATACAACCGAATGATGAGGATAAAACAATACCGTTGGGA
TATTGGGAGTGTCCTCCCACAAGACGTCAAACTGAATCTCGTCGAACAAG
AGGTGTTCAATTACGTCACGAAAGTTTGGAGCGAAACAAAAGATGTCTGC
TAGCATACATCACAGCGTCCGTGGAAGGAGAAGAAGGTTTATACTCAGGA
GGACTTGGTACGTCAAGTGTTGGATGAAATGAGGGTTTTATTCGAAGAAA
ATCAAAAAGAAGTATGTTTGGTGAGAAAGCATTTGAATTGATCAAAGAAT
TGAAAAGATCTACTGATGGAAACCTACCAGCATTTAATCATTTCCTCCCA
ACAACGCAATGTGAACATTTAGTACGTCAAGGAATTCTTGAACATATTTT
AGCATAAGTGCGTTGTTTGGTGGATTACGGAGAATTCGAAACGGAAGATG
GAACCGTTGTCATCCTCAAAAAGAATAGCCAGAATATGACTCCACCAAAA
TCACTTTACATTGAGGTGAAATGGTTTACAGAGTACAACAAATCGCTAGC
AAAATATATGATGTCGACTGCTGGTGGTCATGGTATCGACTTAACACAGA
TACAACCGAATGATGAGGATAAAACAATACCGTTGGGATATTGGGAGTGT
CCTCCCACAAGACGTCAAACTGAATCTCGTCGAACAAGAGGTGTTCAATT
ACGTCACGAAAGTTTGGAGCGAAACAAAAGATGTCTGCTAGCATACATCA
CAGCGTCCGTGGAAGGAGAAGAAGGTTTATACTCAGGAGGACTTGGTACG
TCAAGTGTTGGATGAAATGAGGGTTTTATTCGAAGAAAATCAAAAAGAAG
TATGTTTGGTGAGAAAGCATTTGAATTGATCAAAGAATTGAAAAGATCTA
CTGATGGAAACCTACCAGCATTTAATCATTTCCTCCCAACAACGCAATGT
GAACATTTAGTACGTCAAGGAATTCTTGAACATATTTTAGCATAAGTGCG
TTGTTTGGTGGATTACGGAGAATTCGAAACGGAAGATGGAACCGTTGTCA
TCCTCAAAAAGAATAGCCAGAATATGACTCCACCAAAATCACTTTACATT
GAGGTGAAATGGTTTACAGAGTACAACAAATCGCTAGCAAAATATATGAT
GTCGACTGCTGGTGGTCATGGTATCGACTTAACACAGATACAACCGAATG
ATGAGGATAAAACAATACCGTTGGGATATTGGGAGTGTCCTCCCACAAGA
CGTCAAACTGAATCTCGTCGAACAAGAGGTGTTCAATTACGTCACGAAAG
TTTGGAGCGAAACAAAAGATGTCTGCTAGCATACATCACAGCGTCCGTGG
AAGGAGAAGAAGGTTTATACTCAGGAGGACTTGGTACGTCAAGTGTTGGA
TGAAATGAGGGTTTTATTCGAAGAAAATCAAAAAGAAGTATGTTTGGTGA
GAAAGCATTTGAATTGATCAAAGAATTGAAAAGATCTACTGATGGAAACC
TACCAGCATTTAATCATTTCCTCCCAACAACGCAATGTGAACATTTAGTA
CGTCAAGGAATTCTTGAACATATTTTAGCATAAGTGCGTTGTTTGGTGGA
TTACGGAGAATTCGAAACGGAAGATGGAACCGTTGTCATCCTCAAAAAGA
ATAGCCAGAATATGACTCCACCAAAATCACTTTACATTGAGGTGAAATGG
TTTACAGAGTACAACAAATCGCTAGCAAAATATATGATGTCGACTGCTGG
TGGTCATGGTATCGACTTAACACAGATACAACCGAATGATGAGGATAAAA
CAATACCGTTGGGATATTGGGAGTGTCCTCCCACAAGACGTCAAACTGAA
TCTCGTCGAACAAGAGGTGTTCAATTACGTCACGAAAGTTTGGAGCGAAA
CAAAAGATGTCTGCTAGCATACATCACAGCGTCCGTGGAAGGAGAAGAAG
GTTTATACTCAGGAGGACTTGGTACGTCAAGTGTTGGATGAAATGAGGGT
TTTATTCGAAGAAAATCAAAAAGAAGTATGTTTGGTGAGAAAGCATTTGA
ATTGATCAAAGAATTGAAAAGATCTACTGATGGAAACCTACCAGCATTTA
ATCATTTCCTCCCAACAACGCAATGTGAACATTTAGTACGTCAAGGAATT
CTTGAACATATTTTAGCATAAGTGCGTTGTTTGGTGGATTACGGAGAATT
CGAAACGGAAGATGGAACCGTTGTCATCCTCAAAAAGAATAGCCAGAATA
TGACTCCACCAAAATCACTTTACATTGAGGTGAAATGGTTTACAGAGTAC
AACAAATCGCTAGCAAAATATATGATGTCGACTGCTGGTGGTCATGGTAT
CGACTTAACACAGATACAACCGAATGATGAGGATAAAACAATACCGTTGG
GATATTGGGAGTGTCCTCCCACAAGACGTCAAACTGAATCTCGTCGAACA
AGAGGTGTTCAATTACGTCACGAAAGTTTGGAGCGAAACAAAAGATGTCT
GCTAGCATACATCACAGCGTCCGTGGAAGGAGAAGAAGGTTTATACTCAG
GAGGACTTGGTACGTCAAGTGTTGGATGAAATGAGGGTTTTATTCGAAGA
AAATCAAAAAGAAGTATGTTTGGTGAGAAAGCATTTGAATTGATCAAAGA
ATTGAAAAGATCTACTGATGGAAACCTACCAGCATTTAATCATTTCCTCC
CAACAACGCAATGTGAACATTTAGTACGTCAAGGAATTCTTGAACATATT
TTAGCATAAGTGCGTTGTTTGGTGGATTACGGAGAATTCGAAACGGAAGA
TGGAACCGTTGTCATCCTCAAAAAGAATAGCCAGAATATGACTCCACCAA
AATCACTTTACATTGAGGTGAAATGGTTTACAGAGTACAACAAATCGCTA
GCAAAATATATGATGTCGACTGCTGGTGGTCATGGTATCGACTTAACACA
GATACAACCGAATGATGAGGATAAAACAATACCGTTGGGATATTGGGAGT
GTCCTCCCACAAGACGTCAAACTGAATCTCGTCGAACAAGAGGTGTTCAA
TTACGTCACGAAAGTTTGGAGCGAAACAAAAGATGTCTGCTAGCATACAT
CACAGCGTCCGTGGAAGGAGAAGAAGGTTTATACTCAGGAGGACTTGGTA
CGTCAAGTGTTGGATGAAATGAGGGTTTTATTCGAAGAAAATCAAAAAGA
AGTATGTTTGGTGAGAAAGCATTTGAATTGATCAAAGAATTGAAAAGATC
TACTGATGGAAACCTACCAGCATTTAATCATTTCCTCCCAACAACGCAAT
GTGAACATTTAGTACGTCAAGGAATTCTTGAACATATTTTAGCATAAGTG
CGTTGTTTGGTGGATTACGGAGAATTCGAAACGGAAGATGGAACCGTTGT
CATCCTCAAAAAGAATAGCCAGAATATGACTCCACCAAAATCACTTTACA
TTGAGGTGAAATGGTTTACAGAGTACAACAAATCGCTAGCAAAATATATG
ATGTCGACTGCTGGTGGTCATGGTATCGACTTAACACAGATACAACCGAA
TGATGAGGATAAAACAATACCGTTGGGATATTGGGAGTGTCCTCCCACAA
GACGTCAAACTGAATCTCGTCGAACAAGAGGTGTTCAATTACGTCACGAA
AGTTTGGAGCGAAACAAAAGATGTCTGCTAGCATACATCACAGCGTCCGT
GGAAGGAGAAGAAGGTTTATACTCAGGAGGACTTGGTACGTCAAGTGTTG
GATGAAATGAGGGTTTTATTCGAAGAAAATCAAAAAGAAGTATGTTTGGT
GAGAAAGCATTTGAATTGATCAAAGAATTGAAAAGATCTACTGATGGAAA
CCTACCAGCATTTAATCATTTCCTCCCAACAACGCAATGTGAACATTTAG
TACGTCAAGGAATTCTTGAACATATTTTAGCATAAGTGCGTTGTTTGGTG
GATTACGGAGAATTCGAAACGGAAGATGGAACCGTTGTCATCCTCAAAAA
GAATAGCCAGAATATGACTCCACCAAAATCACTTTACATTGAGGTGAAAT
GGTTTACAGAGTACAACAAATCGCTAGCAAAATATATGATGTCGACTGCT
GGTGGTCATGGTATCGACTTAACACAGATACAACCGAATGATGAGGATAA
AACAATACCGTTGGGATATTGGGAGTGTCCTCCCACAAGACGTCAAACTG
AATCTCGTCGAACAAGAGGTGTTCAATTACGTCACGAAAGTTTGGAGCGA
AACAAAAGATGTCTGCTAGCATACATCACAGCGTCCGTGGAAGGAGAAGA
AGGTTTATACTCAGGAGGACTTGGTACGTCAAGTGTTGGATGAAATGAGG
GTTTTATTCGAAGAAAATCAAAAAGAAGTATGTTTGGTGAGAAAGCATTT
GAATTGATCAAAGAATTGAAAAGATCTACTGATGGAAACCTACCAGCATT
TAATCATTTCCTCCCAACAACGCAATGTGAACATTTAGTACGTCAAGGAA
TTCTTGAACATATTTTAGCATAAGTGCGTTGTTTGGTGGATTACGGAGAA
TTCGAAACGGAAGATGGAACCGTTGTCATCCTCAAAAAGAATAGCCAGAA
TATGACTCCACCAAAATCACTTTACATTGAGGTGAAATGGTTTACAGAGT
ACAACAAATCGCTAGCAAAATATATGATGTCGACTGCTGGTGGTCATGGT
ATCGACTTAACACAGATACAACCGAATGATGAGGATAAAACAATACCGTT
GGGATATTGGGAGTGTCCTCCCACAAGACGTCAAACTGAATCTCGTCGAA
CAAGAGGTGTTCAATTACGTCACGAAAGTTTGGAGCGAAACAAAAGATGT
CTGCTAGCATACATCACAGCGTCCGTGGAAGGAGAAGAAGGTTTATACTC
AGGAGGACTTGGTACGTCAAGTGTTGGATGAAATGAGGGTTTTATTCGAA
GAAAATCAAAAAGAAGTATGTTTGGTGAGAAAGCATTTGAATTGATCAAA
GAATTGAAAAGATCTACTGATGGAAACCTACCAGCATTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004304XLOC_004304Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007627-exon-sc0000078-1575043694:540024..540146TCONS_00007627-exon-sc0000078-1575043694:540024..540146Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1575043694:539435..539499TCONS_00007627-exon-sc0000078-1575043694:539435..539499Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1575043694:539084..539121TCONS_00007627-exon-sc0000078-1575043694:539084..539121Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1575043694:538326..538383TCONS_00007627-exon-sc0000078-1575043694:538326..538383Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1575043694:537929..538019TCONS_00007627-exon-sc0000078-1575043694:537929..538019Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1575043694:537278..537361TCONS_00007627-exon-sc0000078-1575043694:537278..537361Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1575043694:536908..536940TCONS_00007627-exon-sc0000078-1575043694:536908..536940Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1575043694:530824..530898TCONS_00007627-exon-sc0000078-1575043694:530824..530898Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1575043694:530030..530257TCONS_00007627-exon-sc0000078-1575043694:530030..530257Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1510915933:540024..540146TCONS_00007627-exon-sc0000078-1510915933:540024..540146Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1510915933:539435..539499TCONS_00007627-exon-sc0000078-1510915933:539435..539499Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1510915933:539084..539121TCONS_00007627-exon-sc0000078-1510915933:539084..539121Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1510915933:538326..538383TCONS_00007627-exon-sc0000078-1510915933:538326..538383Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1510915933:537929..538019TCONS_00007627-exon-sc0000078-1510915933:537929..538019Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1510915933:537278..537361TCONS_00007627-exon-sc0000078-1510915933:537278..537361Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1510915933:536908..536940TCONS_00007627-exon-sc0000078-1510915933:536908..536940Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1510915933:530824..530898TCONS_00007627-exon-sc0000078-1510915933:530824..530898Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1510915933:530030..530257TCONS_00007627-exon-sc0000078-1510915933:530030..530257Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1491911889:540024..540146TCONS_00007627-exon-sc0000078-1491911889:540024..540146Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1491911889:539435..539499TCONS_00007627-exon-sc0000078-1491911889:539435..539499Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1491911889:539084..539121TCONS_00007627-exon-sc0000078-1491911889:539084..539121Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1491911889:538326..538383TCONS_00007627-exon-sc0000078-1491911889:538326..538383Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1491911889:537929..538019TCONS_00007627-exon-sc0000078-1491911889:537929..538019Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1491911889:537278..537361TCONS_00007627-exon-sc0000078-1491911889:537278..537361Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1491911889:536908..536940TCONS_00007627-exon-sc0000078-1491911889:536908..536940Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1491911889:530824..530898TCONS_00007627-exon-sc0000078-1491911889:530824..530898Clytia hemisphaericaexon
TCONS_00007627-exon-sc0000078-1491911889:530030..530257TCONS_00007627-exon-sc0000078-1491911889:530030..530257Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007627-proteinTCONS_00007627-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:530030..540146 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.3695	25.1908	10.9605	10.5051	7.05409	4.28457	5.28177	4.98752	5.25571	3.82051	6.04287	4.36292	2.68376	3.57521	4.61809	5.34945	9.51395	8.52456	3.28713	3.14925	6.45843	6.22277	14.6896	13.4408	4.10472	2.74257	4.23311	4.10496	7.29566	7.91796
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021151GINS_A
IPR005339GINS_Psf1
Vocabulary: Cellular Component
TermDefinition
GO:0000811GINS complex
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
cellular_component GO:0000811 GINS complex
Blast
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BLAST of TCONS_00007627 vs. Swiss-Prot (Human)
Match: PSF1 (DNA replication complex GINS protein PSF1 OS=Homo sapiens GN=GINS1 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 3.148e-82
Identity = 113/196 (57.65%), Postives = 149/196 (76.02%), Query Frame = 1 
Query:   49 MFGEKAFELIKELKRSTDGNLPAFNEDLVRQVLDEMRVLFEENQKEVT-ASVEGEEGLYSGVQLRHESLERNKRCLLAYIYNRMMRIKQYRWDIGSVLPQDVKLNLVEQEVKWFTEYNKSLAKYMMSTAGGHGIDLTQNMTPPKSLYIEVRCLVDYGEFETEDGTVVILKKNSQHFLPTTQCEHLVRQGILEHILA 633
            MF EKA ELI+EL R+ +G LPAFNED +RQVL+EM+ L+E+NQ +V  A   G   L   ++ RH SL RN+RC +AY+Y+R++RI+  RW+ GSVLP  ++ ++  +E++WF  Y +SLA YM S  G  G+D+TQ+M PPKSLYIEVRCL DYGEFE +DGT V+LKKNSQHFLP  +CE L+RQG+LEHIL+
Sbjct:    1 MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRWKCEQLIRQGVLEHILS 196
The following BLAST results are available for this feature:
BLAST of TCONS_00007627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSF13.148e-8257.65DNA replication complex GINS protein PSF1 OS=Homo ... [more]
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