TCONS_00007627-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007627-protein
Unique NameTCONS_00007627-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length195

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007627-protein ID=TCONS_00007627-protein|Name=TCONS_00007627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MFGEKAFELIKELKRSTDGNLPAFNEDLVRQVLDEMRVLFEENQKEVTAS
VEGEEGLYSGVQLRHESLERNKRCLLAYIYNRMMRIKQYRWDIGSVLPQD
VKLNLVEQEVKWFTEYNKSLAKYMMSTAGGHGIDLTQNMTPPKSLYIEVR
CLVDYGEFETEDGTVVILKKNSQHFLPTTQCEHLVRQGILEHILA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004304XLOC_004304Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007627TCONS_00007627Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021151GINS_A
IPR005339GINS_Psf1
Vocabulary: Cellular Component
TermDefinition
GO:0000811GINS complex
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
cellular_component GO:0000811 GINS complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021151GINS subunit, domain APFAMPF05916Sld5coord: 20..109
e-value: 2.1E-5
score: 24.8
IPR021151GINS subunit, domain ASUPERFAMILY158573GINS helical bundle-likecoord: 1..143
IPR005339GINS complex, subunit Psf1CDDcd11710GINS_A_psf1coord: 3..124
e-value: 1.56818E-56
score: 175.906

Blast
[Close]
BLAST of TCONS_00007627-protein vs. Swiss-Prot (Human)
Match: PSF1 (DNA replication complex GINS protein PSF1 OS=Homo sapiens GN=GINS1 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 6.002e-85
Identity = 113/196 (57.65%), Postives = 149/196 (76.02%), Query Frame = 0 
Query:    1 MFGEKAFELIKELKRSTDGNLPAFNEDLVRQVLDEMRVLFEENQKEVT-ASVEGEEGLYSGVQLRHESLERNKRCLLAYIYNRMMRIKQYRWDIGSVLPQDVKLNLVEQEVKWFTEYNKSLAKYMMSTAGGHGIDLTQNMTPPKSLYIEVRCLVDYGEFETEDGTVVILKKNSQHFLPTTQCEHLVRQGILEHILA 195
            MF EKA ELI+EL R+ +G LPAFNED +RQVL+EM+ L+E+NQ +V  A   G   L   ++ RH SL RN+RC +AY+Y+R++RI+  RW+ GSVLP  ++ ++  +E++WF  Y +SLA YM S  G  G+D+TQ+M PPKSLYIEVRCL DYGEFE +DGT V+LKKNSQHFLP  +CE L+RQG+LEHIL+
Sbjct:    1 MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRWKCEQLIRQGVLEHILS 196
The following BLAST results are available for this feature:
BLAST of TCONS_00007627-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSF16.002e-8557.65DNA replication complex GINS protein PSF1 OS=Homo ... [more]
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