TCONS_00007597 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007597
Unique NameTCONS_00007597
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007597 ID=TCONS_00007597|Name=TCONS_00007597|organism=Clytia hemisphaerica|type=transcript|length=2280bp
agaaaaataaaaaataaacaaaagaaaaagaatgataCCAACGAAAAGAT
ATTTGGTAACATTCATCAAAAGAAGCTTGGTGTACACTCGGCAACGATGT
TACAGCTCTGTGCACACTGGACAAACATCAGCTTTAACAAGTTGTGAAGA
ACTGCATGAGAAATTACAAAATAAAGAATGGCATAAAAAATTGAGGGTTT
TGGATGCACGATGGGATCTAGATGATCGTGATTATCGTGCAATGCATCTC
GGGAATCGTATCCCAGCTTCAAAGTTCTTCTCTTTTGATGAATGTCGTGA
TTTAGACACACCTTTTGATCGAATGTTACCAACATCAGCAAATTTTTCTG
CATATGTCAGCAATTTAGGGATTTCGAACCAACACCACGTGGTCGTTTAT
GATGATAATGAAAAAGTTGGTGCATATTCGTCGCCAAGGGTGTGGTGGAT
GTTTCGTGCATTTGGACATGACAACATTTCCATCTTAGATGGTGGTTTTG
GTAAATGGCGTTTAGACGGATATCCAACAGTTTCTGGCGAATATAcgaaa
gatgaaattttgccgActcCAAAACAACCTTTCATTTCTTTGAAACAACC
AAAACACGTGATGCATTTCGAAGCGGTCAAAGTGAACGCCTTAGCGGAGC
ACCCAACCCAAGCATTAGACGCCAGAGGGAAAGCAAGATTTGTTGATGCT
CGCATCCCTCAATCTCATTCTACACCTTACACtgaactttttaatgaaaa
taaaactttgaagAGCAAAGAAGAATTGattgaatatttcaaacaaaaag
gaattgatttgaaagaagacatttttACTACTTGTGGTTCTGGTGTTACA
GCAAGTATTTTAGCGCATGCGCTGTTCTATTCCTATGGTAAGAACGTTCC
AGTTTACGATGGCTCGTTCTCGGAATGGAAAGTTCGAGCACCTGAACATA
TTGTCACTGATTGAAGCGCGGAAATTTTCTTTTACTGGGAAAGACTTCAG
ATTATTGAATTTTGGTTAATAGTCTCACTTTTTCACGTGATATTTACTGT
GATATGATTGGGGAGTATTGAATGGACTTCTTAGTAGCCAATCACTAGTT
CAACTGTTCTCGTTTTTGTCGTCGAGTTGAcggataaaaatatttgaaac
atacTCAGCATTAATTTGTCTTTCAACTTGACCGGTATTTAAAACATTTC
TTATACTCTTTTATTTTGAGATTTGGTCAGACATTTCGTCTGTCAGTCGG
AACCGctacatagaaatggcaactattgccttaacgggaaatatttcccg
aacgggaaggtgaaaataacccaaaaaggaaactgtttccagattgaaaa
tttcatcacttttctgtttcccgttttggtcaagaacttttcgttgttcc
cgaacgggaagttgaatttttgtaaacaaagcagatttttgtttcccgat
cgagaagaagtttccaaatagggaagtttttaattgggaatggggaaagt
agaattaagaagcgattacccggtggatttcttaactacccggtgaaagg
tatttatttaccctcttttacaatagGTATCAGTTATTTACCTTCCACGA
CCATTTCCGGAGTGCGAAGTTTTTCAcctttcccgttaaggcaatagttg
ccatttctatgtagtggttccgacCTGTctgtgaatttaaaaaaaattga
tatgcTGCAAACACACGCTTTATGATTTGAtatgatttcttcttcttcta
atCATTTGATTTATCAatcttttttaactttctttagTGAAGCAATTGTT
TAAACGCATTGCACTATACCTAAATCGAGATGAGTATCCTGTTCGGATAG
ACAAACCAGCGGCGAACACTTCTGTCAATTCTTTATTCTGGGCGTCTAAA
TGACGCTCGGTCGTGCGTTTTTATTTGCATCCTCTCTTGTCGTTGTATAC
ATATGTGTTGCGGTTTTCTTAGAGAAGCTGGAAGATGTCATTCAGGGTAC
CTGATTTTGTGCATGGGTAACAAAATGTTTAATATAAAACGCGTGCTATG
TATTAAAGAAAGCGACTCGAAATTTCTACTTTTATAtctgttttgatttt
atactttttttccggacaccctgtattgtTTCATGAAGCAATTAATATTG
ATTTATTTAAGTAATTATCTTGTGGaaaattttatatgattttgTAACGA
TTCAGACGATAGCAAAATCTCTACACacatttttagcaaaaattagaACA
AGAATTAAAATCATGAATGATAAAAGCATA
Run BLAST on NCBI

protein sequence of TCONS_00007597-protein

>TCONS_00007597-protein ID=TCONS_00007597-protein|Name=TCONS_00007597-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
MIPTKRYLVTFIKRSLVYTRQRCYSSVHTGQTSALTSCEELHEKLQNKEW
HKKLRVLDARWDLDDRDYRAMHLGNRIPASKFFSFDECRDLDTPFDRMLP
TSANFSAYVSNLGISNQHHVVVYDDNEKVGAYSSPRVWWMFRAFGHDNIS
ILDGGFGKWRLDGYPTVSGEYTKDEILPTPKQPFISLKQPKHVMHFEAVK
VNALAEHPTQALDARGKARFVDARIPQSHSTPYTELFNENKTLKSKEELI
EYFKQKGIDLKEDIFTTCGSGVTASILAHALFYSYGKNVPVYDGSFSEWK
VRAPEHIVTD
Run BLAST on NCBI

transcript from alignment at sc0000078:520741..523732+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007597 ID=TCONS_00007597|Name=TCONS_00007597|organism=Clytia hemisphaerica|type=transcript|length=2992bp|location=Sequence derived from alignment at sc0000078:520741..523732+ (Clytia hemisphaerica)
agaaaaataaaaaataaacaaaagaaaaagaatgataCCAACGAAAAGAT
ATTTGGTAACATTCATCAAAAGAAGCTTGGTGTACACTCGGCAACGATGT
TACAGCTCTGTGCACACTGGACAAACATCAGCTTTAACAAGTTGTGAAGA
ACTGCATGAGAAATTACAAAATAAAGAATGGCATAAAAAATTGAGGGTTT
TGGATGCACGATGGGATCTAGATGATCGTGATTATCGTGCAATGCATCTC
GGGAATCGTATCCCAGCTTCAAAGTTCTTCTCTTTTGATGAATGTCGTGA
TTTAGACACACCTTTTGATCGAATGTTACCAACATCAGCAAATTTTTCTG
CATATGTCAGCAATTTAGGGATTTCGAACCAACACCACGTGGTCGTTTAT
GATGATAATGAAAAAGTTGGTGCATATTCGTCGCCAAGGGTGTGGTGGAT
GTTTCGTGCATTTGGACATGACAACATTTCCATCTTAGATGGTGGTTTTG
GTAAATGGCGTTTAGACGGATATCCAACAGTTTCTGGCGAATATAcgaaa
gatgaaattttgccgAGTAAGTAGTTTTGACCTTTATGGTtcatgaaatt
aattttttgtttcaattttactatttagttaatgaaattattttaaaagt
tttactgGACATTTTGATAAGGATAGAGAAGGCCTTTCTAATTTGTTAGC
TTTTACACACAAAAAATGGCAGATTGAATTAGATTGCCTTTTAATTGCTG
TGTTGAAGCGATATAtttgtaccgtgaaaagcacaggtcgaaatcatata
ccATGacaaccatccaagatcttggatggagttcaaagttgatatttcta
ttcccgtcgttgaaaacacaactcaaaaatatcatcaatgctttttaaaa
agagtcagtgatagagaatcagaAATAAAGTCCGTCTAttttttcgattc
aattaaagtgacatttccataattaaaagtagtaattactgttatacatt
tggggattaTGTAAAAGAtctcttttgaaagaaactcatttcaattacac
tcgGAGGTTTCTGGAGAATTcataaatagtaaactgcatactgatacagt
ctgcttgACATTTACAATAAGGTAATATTTACACTTCATCTTTGAttcag
tgattagattgacacatgcgcgataaaatttctcttattggtcttcagag
gttgaaatattctaaatctctgatactcagggtaatatATTTGCATCTTA
CCACCAATCTtacgtttttcattttcagctcCAAAACAACCTTTCATTTC
TTTGAAACAACCAAAACACGTGATGCATTTCGAAGCGGTCAAAGTGAACG
CCTTAGCGGAGCACCCAACCCAAGCATTAGACGCCAGAGGGAAAGCAAGA
TTTGTTGATGCTCGCATCCCTCAATCTCATTCTACACCTTACACtgaact
ttttaatgaaaataaaactttgaagAGCAAAGAAGAATTGattgaatatt
tcaaacaaaaaggaattgatttgaaagaagacatttttACTACTTGTGGT
TCTGGTGTTACAGCAAGTATTTTAGCGCATGCGCTGTTCTATTCCTATGG
TAAGAACGTTCCAGTTTACGATGGCTCGTTCTCGGAATGGAAAGTTCGAG
CACCTGAACATATTGTCACTGATTGAAGCGCGGAAATTTTCTTTTACTGG
GAAAGACTTCAGATTATTGAATTTTGGTTAATAGTCTCACTTTTTCACGT
GATATTTACTGTGATATGATTGGGGAGTATTGAATGGACTTCTTAGTAGC
CAATCACTAGTTCAACTGTTCTCGTTTTTGTCGTCGAGTTGAcggataaa
aatatttgaaacatacTCAGCATTAATTTGTCTTTCAACTTGACCGGTAT
TTAAAACATTTCTTATACTCTTTTATTTTGAGATTTGGTCAGACATTTCG
TCTGTCAGTCGGAACCGctacatagaaatggcaactattgccttaacggg
aaatatttcccgaacgggaaggtgaaaataacccaaaaaggaaactgttt
ccagattgaaaatttcatcacttttctgtttcccgttttggtcaagaact
tttcgttgttcccgaacgggaagttgaatttttgtaaacaaagcagattt
ttgtttcccgatcgagaagaagtttccaaatagggaagtttttaattggg
aatggggaaagtagaattaagaagcgattacccggtggatttcttaacta
cccggtgaaaggtatttatttaccctcttttacaatagGTATCAGTTATT
TACCTTCCACGACCATTTCCGGAGTGCGAAGTTTTTCAcctttcccgtta
aggcaatagttgccatttctatgtagtggttccgacCTGTctgtgaattt
aaaaaaaattgatatgcTGCAAACACACGCTTTATGATTTGAtatgattt
cttcttcttctaatCATTTGATTTATCAatcttttttaactttctttagT
GAAGCAATTGTTTAAACGCATTGCACTATACCTAAATCGAGATGAGTATC
CTGTTCGGATAGACAAACCAGCGGCGAACACTTCTGTCAATTCTTTATTC
TGGGCGTCTAAATGACGCTCGGTCGTGCGTTTTTATTTGCATCCTCTCTT
GTCGTTGTATACATATGTGTTGCGGTTTTCTTAGAGAAGCTGGAAGATGT
CATTCAGGGTACCTGATTTTGTGCATGGGTAACAAAATGTTTAATATAAA
ACGCGTGCTATGTATTAAAGAAAGCGACTCGAAATTTCTACTTTTATAtc
tgttttgattttatactttttttccggacaccctgtattgtTTCATGAAG
CAATTAATATTGATTTATTTAAGTAATTATCTTGTGGaaaattttatatg
attttgTAACGATTCAGACGATAGCAAAATCTCTACACacatttttagca
aaaattagaACAAGAATTAAAATCATGAATGATAAAAGCATA

Coding sequence (CDS) from alignment at sc0000078:520741..523732+

>TCONS_00007597 ID=TCONS_00007597|Name=TCONS_00007597|organism=Clytia hemisphaerica|type=CDS|length=1866bp|location=Sequence derived from alignment at sc0000078:520741..523732+ (Clytia hemisphaerica)
atgataCCAACGAAAAGATATTTGGTAACATTCATCAAAAGAAGCTTGGT
GTACACTCGGCAACGATGTTACAGCTCTGTGCACACTGGACAAACATCAG
CTTTAACAAGTTGTGAAGAACTGCATGAGAAATTACAAAATAAAGAATGG
CATAAAAAATTGAGGGTTTTGGATGCACGATGGGATCTAGATGATCGTGA
TTATCGTGCAATGCATCTCGGGAATCGTATCCCAGCTTCAAAGTTCTTCT
CTTTTGATGAATGTCGTGATTTAGACACACCTTTTGATCGAATGTTACCA
ACATCAGCAAATTTTTCTGCATATGTCAGCAATTTAGGGATTTCGAACCA
ACACCACGTGGTCGTTTATGATGATAATGAAAAAGTTGGTGCATATTCGT
CGCCAAGGGTGTGGTGGATGTTTCGTGCATTTGGACATGACAACATTTCC
ATCTTAGATGGTGGTTTTGGTAAATGGCGTTTAGACGGATATCCAACAGT
TTCTGGCGAATATAcgaaagatgaaattttgccgActcCAAAACAACCTT
TCATTTCTTTGAAACAACCAAAACACGTGATGCATTTCGAAGCGGTCAAA
GTGAACGCCTTAGCGGAGCACCCAACCCAAGCATTAGACGCCAGAGGGAA
AGCAAGATTTGTTGATGCTCGCATCCCTCAATCTCATTCTACACCTTACA
CtgaactttttaatgaaaataaaactttgaagAGCAAAGAAGAATTGatt
gaatatttcaaacaaaaaggaattgatttgaaagaagacatttttACTAC
TTGTGGTTCTGGTGTTACAGCAAGTATTTTAGCGCATGCGCTGTTCTATT
CCTATGGTAAGAACGTTCCAGTTTACGATGGCTCGTTCTCGGAATGGAAA
GTTCGAGCACCTGAACATATTGTCACTGATTGAatgataCCAACGAAAAG
ATATTTGGTAACATTCATCAAAAGAAGCTTGGTGTACACTCGGCAACGAT
GTTACAGCTCTGTGCACACTGGACAAACATCAGCTTTAACAAGTTGTGAA
GAACTGCATGAGAAATTACAAAATAAAGAATGGCATAAAAAATTGAGGGT
TTTGGATGCACGATGGGATCTAGATGATCGTGATTATCGTGCAATGCATC
TCGGGAATCGTATCCCAGCTTCAAAGTTCTTCTCTTTTGATGAATGTCGT
GATTTAGACACACCTTTTGATCGAATGTTACCAACATCAGCAAATTTTTC
TGCATATGTCAGCAATTTAGGGATTTCGAACCAACACCACGTGGTCGTTT
ATGATGATAATGAAAAAGTTGGTGCATATTCGTCGCCAAGGGTGTGGTGG
ATGTTTCGTGCATTTGGACATGACAACATTTCCATCTTAGATGGTGGTTT
TGGTAAATGGCGTTTAGACGGATATCCAACAGTTTCTGGCGAATATAcga
aagatgaaattttgccgActcCAAAACAACCTTTCATTTCTTTGAAACAA
CCAAAACACGTGATGCATTTCGAAGCGGTCAAAGTGAACGCCTTAGCGGA
GCACCCAACCCAAGCATTAGACGCCAGAGGGAAAGCAAGATTTGTTGATG
CTCGCATCCCTCAATCTCATTCTACACCTTACACtgaactttttaatgaa
aataaaactttgaagAGCAAAGAAGAATTGattgaatatttcaaacaaaa
aggaattgatttgaaagaagacatttttACTACTTGTGGTTCTGGTGTTA
CAGCAAGTATTTTAGCGCATGCGCTGTTCTATTCCTATGGTAAGAACGTT
CCAGTTTACGATGGCTCGTTCTCGGAATGGAAAGTTCGAGCACCTGAACA
TATTGTCACTGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004287XLOC_004287Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007597-proteinTCONS_00007597-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007597-exon-sc0000078-1491911889:520741..521306TCONS_00007597-exon-sc0000078-1491911889:520741..521306Clytia hemisphaericaexon
TCONS_00007597-exon-sc0000078-1510915933:520741..521306TCONS_00007597-exon-sc0000078-1510915933:520741..521306Clytia hemisphaericaexon
TCONS_00007597-exon-sc0000078-1575043694:520741..521306TCONS_00007597-exon-sc0000078-1575043694:520741..521306Clytia hemisphaericaexon
TCONS_00007597-exon-sc0000078-1491911889:522019..523732TCONS_00007597-exon-sc0000078-1491911889:522019..523732Clytia hemisphaericaexon
TCONS_00007597-exon-sc0000078-1510915933:522019..523732TCONS_00007597-exon-sc0000078-1510915933:522019..523732Clytia hemisphaericaexon
TCONS_00007597-exon-sc0000078-1575043694:522019..523732TCONS_00007597-exon-sc0000078-1575043694:522019..523732Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:520741..523732 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.5264	15.1218	23.9633	23.4851	7.62191	5.4268	11.2708	12.3987	10.3269	11.3331	11.6551	9.58014	10.1364	9.5522	9.8499	14.6198	10.2363	9.66963	7.22431	6.065	11.2256	10.7894	14.2599	12.3303	7.80863	8.16745	10.1784	8.0562	10.7712	10.3343
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001763Rhodanese-like_dom
IPR001307Thiosulphate_STrfase_CS
Vocabulary: Molecular Function
TermDefinition
GO:0004792thiosulfate sulfurtransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004792 thiosulfate sulfurtransferase activity
Blast
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BLAST of TCONS_00007597 vs. Swiss-Prot (Human)
Match: THTM (3-mercaptopyruvate sulfurtransferase OS=Homo sapiens GN=MPST PE=1 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 3.393e-52
Identity = 105/291 (36.08%), Postives = 156/291 (53.61%), Query Frame = 2 
Query:  131 ALTSCEELHEKLQNKEWHKKLRVLDARWDLD--DRDYRAMHLGNRIPASKFFSFDECRDLDTPFDRMLPTSANFSAYVSNLGISNQHHVVVYDDNEKVGAYSSPRVWWMFRAFGHDNISILDGGFGKWRLDGYPTVSGEYTKDEILPTPKQPFISLKQPKHVMHFEAVKVNALAEHPTQALDARGKARFVD-----------ARIPQSHSTPYTELFNENKTLKSKEELIEYFKQKGIDLKEDIFTTCGSGVTASILAHALFYSYGKNVPVYDGSFSEWKVRA-PEHIVTD 961
            AL S + + E L+     + L++LDA W L    RD R       IP + FF  D+C D  +P+D MLP + +F+ Y   LG+    HVV+YD +++ G YS+PRVWWMFRAFGH  +S+LDGG   W     P  SG+       P P + F +   P  +  +E +K N L     Q +D+R   RF               IP + + P+T+  ++    KS EE+   F++K +DL + +  TCGSGVTA  +A   +     +VP+YDGS+ EW +RA PE ++++
Sbjct:    9 ALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQ-GLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGKSQ-----PAPAE-FRAQLDPAFIKTYEDIKEN-LESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISE 291
The following BLAST results are available for this feature:
BLAST of TCONS_00007597 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
THTM3.393e-5236.083-mercaptopyruvate sulfurtransferase OS=Homo sapie... [more]
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