|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007595 ID=TCONS_00007595|Name=TCONS_00007595|organism=Clytia hemisphaerica|type=transcript|length=3320bp
GTTCGAGATGAACAACCTACCTACAAAATTAACAAACTTTACTGACTTTC
GATTACTTCATGAAAACGTCATTTTTAAAAGGATTCATTCACTCGACATC
ATCAATAAATGGatgataaaaatgaaatgatgCATCATGAGTGAATTTGT
TGAAGATGATGACAATGATAAAGTCAGAGCTGCTATAGTTGCCCGATATG
AACGTGGTCCTGAAGGCCCCATTGAACCCTGGGAAGATgctagttttatt
gtttatcAAGTGTGTGACCGATATGGGTTTCTTCACAAGAACCCTCTCCC
TCaatatgaaaaagatgaaaaggTGATGGAATTGGAGAGAGAACGagcca
aaaaatggctgaaaatgattgcTGGATGGGAGACATATTTTATTGATAAT
AAAGTCTCTGAAAAGCTCCGGAGACGTGTTTATAAAGGAATACCTGATAG
CATAAGAGGTAGTGCCTGGAAAATGATGTTGAACATTGATCATGTGGCAA
AAGCAGGCGTCTATACACGTTTTAAGAATATCGCCTTAGAAAATAGTCCT
GATATTCGACAAATTGATTTAGATGTCAATAGGACTTACAGGGACCACAT
AATGTTCAGGGACAGGTTCTCGATAAAACAGCAAGCATTGTTTAATGTTT
TAGCTGCATATTCTCTTTACAACACTGATGTAGGTTACTGCCAAGGAATG
AGTGGTATAACTGCATTATTGTTGATGTACATGAACGAAGAAGATGCTTT
TTGGGCTCTTTCAGAACTTTTGAATGATAAGAAACATGCTATGCATGGAT
TGTTTATACCTGGATTTCCAAAGTTATTGAGGTTACAAGATCAtcatgat
aaaattttgaagaagttTTTACCAAAGATATACAAGCATCTTGATCGTGA
AGGTGTCAATACAAGTTTGTATACGTTGAAATGGTTTATGCAATGTTTTC
TGGATCGATTACCGTTTTCATTAGTGCTTAGATTGTATGATGTTTTTATA
TTGGAGGGTGATCGCATTTTAACTGCTATGGCTTACCATATTTTAAAGAT
GTTTCGAAAGCAAATATTGAAGATGGATTTAGAGGGTATTGCTCCTTTGT
TACAAGAAGATGTACCTGGATATAATTTTGATAACGATGAAATAATGGAA
TCACTCCAAGAAACTATAGCTgaattaaaacgtggaaaacttgaTAAAGC
CCCTCCACCTACTGAGGCTGAACAACCAAGCAAGCCACTAGGTACGTTAC
CTCAGCGCAATTCGTACATCACTGCATCTAAAAGGGCTAGAAGTATAGGT
GATCGTAAAAGCACAATCGAAGTCCCAATGGGTCGCCCTCCCTCGCCAAC
ACCTTCAGATAAGAATCACGCAAATGGAAACACCTCACCTGAGCAAATTG
AATACAAAGGGCTTGTTATTAAACAGCCGAAAACACATGTGATCACACAA
CCAGCACCTAATCACTATGATCGCAAGGGGAGCTCTCCTCAACCTCTACC
TTCCTATTCAgagtttattgaaaagaaaaatcagctGCAAAACCAAATAT
CAGGACATTCAGACACTTCATCGTTTGGTCAAAGGAGTCCACCCTTACGT
TCGGTTCCTCCGCCAGCAAGTTCTCCATTTTCACCACCAGCAGGTTCACC
CTCTCGTAATAGTCCAATTCTTGTAAGAAGCTCCATGAAAGTTGATaaga
agtccaaaaaaggtaaaaaagaaaatgacagtAAGTTTTATGTGGAAGAC
ACTGTTGATTTCCATTCAAGCTATAGCATCAGTTCTTCCAACTTTAGCGA
GCAAATGTATCGCGGCCCAAGCCCTACCTCACCGACTATATGGTCTGCAG
AGGTGCAAAGCTCTCGTGGATACACAACATCAGTATCATCATCTGAAGAC
CAACGATCACCAAGACCAAATGGTTATTCAGGCCCTAAAATGCCCCCTCG
AGATTATGATGACGATGACGAGGAATTGCATCATTCAAAttcgagaaaaa
ttaaaaacaggaAAGGTACAACTCATAGAGTTTTGAATAGTGATGGTTTG
AGACCTAACGAGGCTGCAAATGAGACACGATTATAATAGTATTATTTTTg
gactttatatattttttgaaaagagaaattaGGGAGCCACTTTAAGATTA
AACTTTAGGCTTAATATTAGGTAGATTGTACCCATACTAAAGATTCTATG
AatactttttgcttttgttctttcttaaaaaacttaaacCTGCATCCTAC
TTGACTGAAGCTTTGATGATTTGATAAagtgtttttattatttttttggt
ctatttttttttagataaagCACTTTTGATCAAACCTCAATAGACCCCTT
AATCTATTTCAAATTCTATTTTAACTTCGTTACATATGTATGTTATTATA
TAATAAGTAATTTTATTATGTTGACGTAAATGATTGCTTTACCAGTAAGC
TGAGCATTTGatattgaaacttgaaattcgCTGTTACTACCAAAAGCTGT
TTTTATCGACGTTCTGACCAAAATTTGTGGAAGAATTgagttttgttttc
attttgagaaaatgcaAATGGCCGTTTTGTACAAATACTTTAGATATTTT
CTAGTTTTCATATAATAAGGATATTATTAGCGATAATATTATGAATAATT
TCTTATGTAAATAAATTAATTTCGAGATTCTTGAGTATTTTccaacatta
ttattattattatgtaaCTGTTTATATTTTCCCTTGatcattatattttt
ttgttgttatGCTTAAGTTcactttttcaaatcttttgttgAACATTTTA
GGGATTAcatttgattttgaagaaaGGTGGTATCAGGGAATAATGTTCTC
TTTTGTTTTCATCTTGATAAGATGGAAAGTATACATTTGGCTGTGAaatt
tatcttcttttttttttgcacaaaaagagGGCGAGAGGGAGAATGAATTT
GAGAATTTAGAGGCAGATGTCTTAGTTTTTCCTTCGTTTTCTTTCGAAAT
GTATTTCTGTGGAATGGACGGTAGTCTATTTATAACAAACAtggtatttt
tcttttattctttaatcTAAGTTTCAATATCATCggtaaattttaaaaac
caaCTGTCAACTTTCTCGTTTTCGTATCAAACTATTTGTCTCATAGTAAT
GTTTACACATTATGTAATTGGATCTCATCCAACTCTCTATAATGAAATAC
GTGCAGAAACAAGCAATTAATCGACTACAACTCAAGCATTGACAAAATTG
ACATCATAAATCCTTTTATAACCGTCCTCTCTTTTTTTGCATTGTAAGCT
AGAAAGACATTCTCGAAATT Run BLAST on NCBI protein sequence of TCONS_00007595-protein >TCONS_00007595-protein ID=TCONS_00007595-protein|Name=TCONS_00007595-protein|organism=Clytia hemisphaerica|type=polypeptide|length=649bp
MSEFVEDDDNDKVRAAIVARYERGPEGPIEPWEDASFIVYQVCDRYGFLH
KNPLPQYEKDEKVMELERERAKKWLKMIAGWETYFIDNKVSEKLRRRVYK
GIPDSIRGSAWKMMLNIDHVAKAGVYTRFKNIALENSPDIRQIDLDVNRT
YRDHIMFRDRFSIKQQALFNVLAAYSLYNTDVGYCQGMSGITALLLMYMN
EEDAFWALSELLNDKKHAMHGLFIPGFPKLLRLQDHHDKILKKFLPKIYK
HLDREGVNTSLYTLKWFMQCFLDRLPFSLVLRLYDVFILEGDRILTAMAY
HILKMFRKQILKMDLEGIAPLLQEDVPGYNFDNDEIMESLQETIAELKRG
KLDKAPPPTEAEQPSKPLGTLPQRNSYITASKRARSIGDRKSTIEVPMGR
PPSPTPSDKNHANGNTSPEQIEYKGLVIKQPKTHVITQPAPNHYDRKGSS
PQPLPSYSEFIEKKNQLQNQISGHSDTSSFGQRSPPLRSVPPPASSPFSP
PAGSPSRNSPILVRSSMKVDKKSKKGKKENDSKFYVEDTVDFHSSYSISS
SNFSEQMYRGPSPTSPTIWSAEVQSSRGYTTSVSSSEDQRSPRPNGYSGP
KMPPRDYDDDDEELHHSNSRKIKNRKGTTHRVLNSDGLRPNEAANETRL Run BLAST on NCBI transcript from alignment at sc0000078:501112..514365+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007595 ID=TCONS_00007595|Name=TCONS_00007595|organism=Clytia hemisphaerica|type=transcript|length=13254bp|location=Sequence derived from alignment at sc0000078:501112..514365+ (Clytia hemisphaerica)
GTTCGAGATGAACAACCTACCTACAAAATTAACAAACTTTACTGACTTTC
GATTACTTCATGAAAACGTCATTTTTAAAAGGATTCATTCACTCGACATC
ATCAATAAATGGGTATATCTTTAATCGTTATTAAGTTCTagctttttttc
tttgaattaaacGCAAATCTTTCTAATTTTACTGCTTTAAAGGATCGAAA
GTTAGACTAAAAAAAAGGTTCAAAAGCAGTTATATAAGTGATAAGGTCAA
GTTTGTTGAGCGCTATAAACCATACTTCCTCAGACAGAAAGAAGACAGCA
GGGGTGACTTTGATGCTGTAGCTTAGTCGATACAAGCTTTTTATCAtatc
tgtttttttctttttaacttttataaaTGTCAGGCGGCAGGGATAGCCAT
TCCtgggtcaaattgaaactattctgatggcaatcaaacctagttcatct
tgtagagcttcaaaaaagaaaaaaaatgaggggtcatacacctcctaatg
ataagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNggaccctgccgacgcaccggactgtccggtgtatttgtccggtggcaa
aaagtatcctttcgctacaccggacgcaataagtccgatgtcagtccggt
gttgcaNtgtgaacattttttcctccgcagcgctttgaaatcaaagatga
gttgtgaaattttttgtgtcccgcagatctaatttttctaaaaaatggcc
ttagttgaaacaaatttttagacaaaagtgtagaatattacacctgcata
ttatatatggttggaaagctaaaagaaagctcNGCCGGACATttacgaaa
caaaaaattaagaaacatcggacgcaccggactggtcatgtccggtgttt
tgattgtccggtggaaaaaaatatccttctccgacaccggacatccgact
tccttaagtNNNNNaaatttttagacaaaagtgtagaatattacacctgc
atattatatatggttggaaagctaaaagaaagctctaaattactcaaaaa
taattaatttcatAGCTCaacaaagaacaattgcttgtcaaagtttgacc
taaaattgaagattttgataagcgtcaaataaaaaacaagcaaacctgGA
ATTGCTAGCAGGGAAACAGAACTAAAACCTACCGTGagaaggaccctgcc
gacgcaccggactgtccggtgtatttgtccggtggcaaaagtatcctttc
gctacaccggacacaataagtccggtgtcagtccggtgttgaatacaggg
aattttggacgccggacatttacgaaacaaaaaattaagaaacaccggcc
ggacgcaccggactggtcatgtccggtgttttgattgccCGGTGGGAAAA
agtatccttctccgacaccggacatcccatttccttaagtccggtgtaga
aattgtccggtggtaaaaaaaattctcattttacaccggactttcgtcgc
gtgtccggtgttcgttaagtccggtgcgtcggcagggtcctccgtgagat
tgggtaacttgcatcagtggagggaggctaacatgcatagccttcaaatg
actgaccaatctaagcagcaaaatttcaaaacaaatgaactacgcagctc
tgcttgcagctctactctaccatttatgttttgatttaactttgtatata
ttttaatgaccaattttaatgaccagccaggtcattcatttctgagggct
atgcatgttagccttcactgatgcaagttaagttacctgatctcatgGCA
GCATGGTCAATTCCCTGACTGATTGCAgtataaacgtcacttttacattt
ttcattcaAGGAGAAAATACGATGGCCCCtatagtctggagatccatact
ctctattcaaacttacagctactcattgagagtatggtatttttgaccca
gtttgaatttctATATATACATTTGGTTTGAActttgtgccaaaaaagcc
attgataaggttagccaatcagattcatgcacttccaatcaaaacaataa
tatcacgtgatttcaacaattgttttaTAGCCaatagaatagaccttttc
gcctttccatctgccatcttgaattgtatgcaaaaatagaggaacgaaaa
agccgtggttggatttaattggaaagtatgcaaaacatatgcaattttac
tcaaagattaaaaagacaacaaagcatcttataaataaatactataatca
ttagaacaataaaagatggaatttcttaatccaaaaagaaatattcacag
aacaacaaaagccttttagaaatttgttcttaaagacatagcatattctg
ttttcatgccattaagaaattccatgaaggcggagtacacacatcaaact
ttcaaaacacgcaatctgaaagcagtaattatgaggtcacacattatcaa
tgttttgatttgatcatttggtgGCTCTATTCCCAgaagaataatttacc
gtcagccgaataaggatcattttttaccttcgttggtgatttttcagttt
gagtttatgtctaatgttatggattTTTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNcccctaacatggttagtcccccctagccacagtgaaaa
atcaggtaccaattgctgctcgaccttttagccctccctcaggccagggg
ggggttccagccatgaaagcaatcagtagaagaaacAAACCACtttagtt
tttgttgcagattttgatttattaaaCTTCTCACAGGGATGTTTTGTCAA
TGGGTTGTGCCAACTTGTCAGCTGTATTGATGCAAAGGCTGATAAAAGAG
atactagcctagtttctaatcctgatgtAGGAGTTTAAGTCTAGACTGCT
AGGCTAGACCTACCTCTTTTCTCTTTCCTATTCCAACAATACAATGCTTA
ATAAGTTGACACACGTTGACTCGTGCAatgtttatatcaaaatctgcatt
aaaacgaaagtagtcttccttttttaaatttcaacaatGAGATTGCTGCG
TACATGCTGCGTATATGTTGGGACTCAATAAAATCGCTAAAACAAGGACT
TACAAAACCAAGGCAAGTCAACGAGAAAATGATGACCAAAAGCGATGGTA
CCAAATGTAAGTCTGCAGAAGAAAATGCAGAGGTGTTTAAAGTCCATTTC
GAACAACTATACGACCGTAAACCAACTTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNcccctaacatggttagtcccccctagccac
agtgaaaaatcaggtaccaattgctgctcgaccttttagccctccctcag
gccaggggggggttccagccatgaaagcaatcagtagaagaaacAAACCA
CtttagtttttgttgcagattttgatttattaaaCTTCTCACAGGGATGT
TTTGTCAATGGGTTGTGCCAACTTGTCAGCTGTATTGATGCAAAGGCTGA
TAAAAGAGatactagcctagtttctaatcctgatgtAGGAGTTTAAGTCT
AGACTGCTAGGCTAGACCTACCTCTTTTCTCTTTCCTATTCCAACAGTAC
AATGCTTAATAAGTTGACACACGTTGACTCATGCAatgtttatatcaaaa
tctgcatTAAAACAAAAGTAGTcttccttttttaaatttcaacaatGAGA
TTGCTGCGTACAATAAAGTTTAACAGCCAGCTGCTTTCTTATTTTTAGTT
CTCAAATGAAAGTGGCAATTTGATGTGAGCCTTATTTTTTCAAGGAACCC
tctctgattggatgaaagcgCTTTCATTTATTTATCACTTCATTTATTTG
GATACTTCTTTTTAAACAATTACACAtacgattttaagaaaaaagtaGAC
AAGAATCAATTTACTGTCAGTTTCATCTTTTATTTCGAATCATCagctaa
ttttttgaaaaactacaTACTTCTTTCTTATAAGAttgatttatgaaaat
ttgaattagaaATGTGATTTGATACCTAAGGGAATaatgacaatttataa
ttggcTAGTAATTTGCATGATATTTAAAGTGTAATCTTTTAGAAGAAAGA
TCAATTTTGCTTCTCTAGAAAACCATAATTATATCTTCTCATTCCTTAAG
ACCAGcccttcaaaaaaccataactaGACCCAAACTTAAGCTGAGAAATC
AGCAACAAAGGTGCAGGAATAATCCTTATTCAGCAGACaaaaaattattc
tcctgggaagaGCACGACAAAATGACTTGTATTTTAGATCAAAACATTGA
ACTTGAGGCTGAAGATGGTCCAAAGAATAAGGAGTTGTTAAGAAACTACT
TGAACTTCCACAAATTTAAGAAAACCTAAACTaaacaaaagtggtctctt
ctactcaGTGCTTCCTTAAGCCAGTCTATTGGAAAGTCCTACCGCACACA
TATGATGTTACCCAAATGATAAATGACGGGCTGtgaaaaacattgaacat
gtacctaatcaatgttttttgacctaTTAGTGATAATGGGGTCCCCAAAT
TTAGCattgtttttttaaattagcAATTTGTATGATAAAACATCtttaag
aaattttcaaattgactTTTTGATTGTTTAGAATCAATCCTTTTGAAAGT
GAGTTCCTATTAGCAAGTGCTTGTTATATTTCATGAAAtacaagtttatt
tttcttctatcATTTGTGTTGAAGAATTAGTAAACAGAATGTACCGGGTG
TTTCAAATAAAGTGTACAAGTTTGAAGTGAGGTTGCGAGAAAAGTAAAAA
TGTTATATATTAATTCAAACTTTTCGCCATTCAAAGGAGGAAAGGCtaac
taaaattttgagctaGATCATACTTGCTTTTGCTTCACACATTCAAAAGT
TATAAACTAATAAAGACTATTCGAAAAaatactctttcaaaaaaaccGTC
TAACAAATATGTTTCTAGTTGATTTGCCATTTTTTAGGGattcaaatatt
caaatatttttaggtCTCTTATTAACCCTTTAAACATTGAAAAACATGTA
TATACATCCAAAATCTCCATTCCAAGACTTTTGGCCATAGTTCTTAACCA
CTTGATTTTTACTTTCTTAGAAGGAATATTAAAGATTGCTTTCTAAATGA
TACCAAAATGAGCTCATGACATTCCATGCTATAAGCTTTTATGGCATATA
TAATCTGTAATTTCATAAGAaatattaaaaagaaatcaactttttcaaaa
aaaacaacaggGCCCAAGCCCAAAAGGTTAATGCAGATtcaaagtattta
gaaaataGAGAGATCTGTATATAGGGGGTGAAACACAAATAAGGGTTTAG
ACTCCTTTCCAGACTCCTTTCCACACTATGGTTGACTGGAATTTTTCACA
GGGAAGTGGTAAtaagatttttaagattgttgaAGATTATATTTTCAAAC
ACTTACAACATAAACTTAACCAAACAGCATATTCTGtagttttttgcaaa
ttttggacCTTCAGAATCATTTTTTAAACAAGTGAAGAACAAGAACTCTG
TTAAGTTCTTTAAATTAACTTATGTCTATATTCTCTATAACACAAGTCGT
TTCATGCAATATACAAATTTGGATCGAAATTGAAGTCCCTAGTTTAAGTC
GAAGAATTAATTTGGATTTGAACTAATATTAACTGTAAATCAGTCGATAT
AATATTGTACTAGAacattgttgaaaattttttcttagtttCCCTCTCCT
AGGAATAATTTATAATAGTGGAACTAGTTTTGTGAATCACTATTACTAAA
TTGTTGATGAACTTATTTATTTGACAGCGAAACTGAGTGACAGAGTAAAT
TGTTTAAAGTTTTGTCATTAAAATGCACAGTAATTGGCATTGATTTAGTT
AATTGCCAGCAAAATTGACTTTTACTTCCTGAAGATAATATATAATCTAT
AAGCTATGtcataatttttgttttctgaGCCACTGCCTTCTTGTAATATT
TATGtttgttgaattttgaaacaggtcagaaaaactttttgttatacTTC
AGTgacaaatttggtatttttattctAATTAAAGGCATTTTAGATTGTTT
TACATTATATGTAAATGTAGTGTTATTAAAAGTTGGTTGTCATTCATCAA
GTTTATTTTTTCTCGTTTTGTGGCTTACCAAATATTGATTCTGTGGTGTC
TTATTACTGTACGTTCTAtctcattttttttcaagtcagaaataTTGCAT
GATTAATAGATGTATTATTGTTGTTGGTAAAGCAAAGATTTGTAAACTTG
AGTTCTTATTTAATTGATAATAAGTAGAAATATGATAAATGCAGCTAAAT
GGTACAATCTTTTAAGACTTAAACTCCAACTTTGCTTATTTCTTagatga
taaaaatgaaatgatgCATCATGAGTGAATTTGTTGAAGATGATGACAAT
GATAAAGTCAGAGCTGCTATAGTTGCCCGATATGAACGTGGTCCTGAAGG
CCCCATTGAACCCTGGGAAGATgctagttttattgtttatcAAGTGTGTG
ACCGATATGGGTTTCTTCACAAGAACCCTCTCCCTCaatatgaaaaagat
gaaaaggTGATGGAATTGGAGAGAGAACGagccaaaaaatggctgaaaat
gattgcTGGATGGGAGACATATTTTATTGATAATAAAGTCTCTGAAAAGC
TCCGGAGACGTGTTTATAAAGGAATACCTGATAGCATAAGAGGTAGTGCC
TGGAAAATGATGTTGAACATTGATCATGTGGCAAAAGCAGGCGTCTATAC
ACGTTTTAAGAATATCGCCTTAGAAAATAGTCCTGATATTCGACAAATTG
ATTTAGATGTCAATAGGACTTACAGGGACCACATAATGTTCAGGGACAGG
TTCTCGATAAAACAGCAAGCATTGTTTAATGTTTTAGCTGCATATTCTCT
TTACAACACTGATGTAGGTTACTGCCAAGGAATGAGTGGTATAACTGCAT
TATTGTTGATGTACATGAACGAAGAAGATGCTTTTTGGGCTCTTTCAGAA
CTTTTGAATGATAAGAAACATGCTATGCATGGATTGTTTATACCTGGATT
TCCAAAGTTATTGAGGTTACAAGATCAtcatgataaaattttgaagaagt
tTTTACCAAAGATATACAAGCATCTTGATCGTGAAGGTGTCAATACAAGT
TTGTATACGTTGAAATGGTTTATGCAATGTTTTCTGGATCGATTACCGTT
TTCATTAGTGCTTAGATTGTATGATGTTTTTATATTGGAGGGTGATCGCA
TTTTAACTGCTATGGCTTACCATATTTTAAAGATGTTTCGAAAGCAAATA
TTGAAGATGGATTTAGAGGGTATTGCTCCTTTGTTACAAGAAGATGTACC
TGGATATAATTTTGATAACGATGAAATAATGGAATCACTCCAAGAAACTA
TAGCTgaattaaaacgtggaaaacttgaTAAAGCCCCTCCACCTACTGAG
GCTGAACAACCAAGCAAGCCACTAGGTACGTTACCTCAGCGCAATTCGTA
CATCACTGCATCTAAAAGGGCTAGAAGTATAGGTGATCGTAAAAGCACAA
TCGAAGTCCCAATGGGTCGCCCTCCCTCGCCAACACCTTCAGATAAGAAT
CACGCAAATGGAAACACCTCACCTGAGCAAATTGAATACAAAGGGCTTGT
TATTAAACAGCCGAAAACACATGTGATCACACAACCAGCACCTAATCACT
ATGATCGCAAGGGGAGCTCTCCTCAACCTCTACCTTCCTATTCAgagttt
attgaaaagaaaaatcagctGCAAAACCAAATATCAGGACATTCAGACAC
TTCATCGTTTGGTCAAAGGAGTCCACCCTTACGTTCGGTTCCTCCGCCAG
CAAGTTCTCCATTTTCACCACCAGCAGGTTCACCCTCTCGTAATAGTCCA
ATTCTTGTAAGAAGCTCCATGAAAGTTGATaagaagtccaaaaaaggtaa
aaaagaaaatgacagtAAGTTTTATGTGGAAGACACTGTTGATTTCCATT
CAAGCTATAGCATCAGTTCTTCCAACTTTAGCGAGCAAATGTATCGCGGC
CCAAGCCCTACCTCACCGACTATATGGTCTGCAGAGGTGCAAAGCTCTCG
TGGATACACAACATCAGTATCATCATCTGAAGACCAACGATCACCAAGAC
CAAATGGTTATTCAGGCCCTAAAATGCCCCCTCGAGATTATGATGACGAT
GACGAGGAATTGCATCATTCAAAttcgagaaaaattaaaaacaggaAAGG
TACAACTCATAGAGTTTTGAATAGTGATGGTTTGAGACCTAACGAGGCTG
CAAATGAGACACGATTATAATAGTATTATTTTTggactttatatattttt
tgaaaagagaaattaGGGAGCCACTTTAAGATTAAACTTTAGGCTTAATA
TTAGGTAGATTGTACCCATACTAAAGATTCTATGAatactttttgctttt
gttctttcttaaaaaacttaaacCTGCATCCTACTTGACTGAAGCTTTGA
TGATTTGATAAagtgtttttattatttttttggtctatttttttttagat
aaagCACTTTTGATCAAACCTCAATAGACCCCTTAATCTATTTCAAATTC
TATTTTAACTTCGTTACATATGTATGTTATTATATAATAAGTAATTTTAT
TATGTTGACGTAAATGATTGCTTTACCAGTAAGCTGAGCATTTGatattg
aaacttgaaattcgCTGTTACTACCAAAAGCTGTTTTTATCGACGTTCTG
ACCAAAATTTGTGGAAGAATTgagttttgttttcattttgagaaaatgca
AATGGCCGTTTTGTACAAATACTTTAGATATTTTCTAGTTTTCATATAAT
AAGGATATTATTAGCGATAATATTATGAATAATTTCTTATGTAAATAAAT
TAATTTCGAGATTCTTGAGTATTTTccaacattattattattattatgta
aCTGTTTATATTTTCCCTTGatcattatatttttttgttgttatGCTTAA
GTTcactttttcaaatcttttgttgAACATTTTAGGGATTAcatttgatt
ttgaagaaaGGTGGTATCAGGGAATAATGTTCTCTTTTGTTTTCATCTTG
ATAAGATGGAAAGTATACATTTGGCTGTGAaatttatcttcttttttttt
tgcacaaaaagagGGCGAGAGGGAGAATGAATTTGAGAATTTAGAGGCAG
ATGTCTTAGTTTTTCCTTCGTTTTCTTTCGAAATGTATTTCTGTGGAATG
GACGGTAGTCTATTTATAACAAACAtggtatttttcttttattctttaat
cTAAGTTTCAATATCATCggtaaattttaaaaaccaaCTGTCAACTTTCT
CGTTTTCGTATCAAACTATTTGTCTCATAGTAATGTTTACACATTATGTA
ATTGGATCTCATCCAACTCTCTATAATGAAATACGTGCAGAAACAAGCAA
TTAATCGACTACAACTCAAGCATTGACAAAATTGACATCATAAATCCTTT
TATAACCGTCCTCTCTTTTTTTGCATTGTAAGCTAGAAAGACATTCTCGA
AATT Coding sequence (CDS) from alignment at sc0000078:501112..514365+ >TCONS_00007595 ID=TCONS_00007595|Name=TCONS_00007595|organism=Clytia hemisphaerica|type=CDS|length=1950bp|location=Sequence derived from alignment at sc0000078:501112..514365+ (Clytia hemisphaerica)
ATGAGTGAATTTGTTGAAGATGATGACAATGATAAAGTCAGAGCTGCTAT
AGTTGCCCGATATGAACGTGGTCCTGAAGGCCCCATTGAACCCTGGGAAG
ATgctagttttattgtttatcAAGTGTGTGACCGATATGGGTTTCTTCAC
AAGAACCCTCTCCCTCaatatgaaaaagatgaaaaggTGATGGAATTGGA
GAGAGAACGagccaaaaaatggctgaaaatgattgcTGGATGGGAGACAT
ATTTTATTGATAATAAAGTCTCTGAAAAGCTCCGGAGACGTGTTTATAAA
GGAATACCTGATAGCATAAGAGGTAGTGCCTGGAAAATGATGTTGAACAT
TGATCATGTGGCAAAAGCAGGCGTCTATACACGTTTTAAGAATATCGCCT
TAGAAAATAGTCCTGATATTCGACAAATTGATTTAGATGTCAATAGGACT
TACAGGGACCACATAATGTTCAGGGACAGGTTCTCGATAAAACAGCAAGC
ATTGTTTAATGTTTTAGCTGCATATTCTCTTTACAACACTGATGTAGGTT
ACTGCCAAGGAATGAGTGGTATAACTGCATTATTGTTGATGTACATGAAC
GAAGAAGATGCTTTTTGGGCTCTTTCAGAACTTTTGAATGATAAGAAACA
TGCTATGCATGGATTGTTTATACCTGGATTTCCAAAGTTATTGAGGTTAC
AAGATCAtcatgataaaattttgaagaagttTTTACCAAAGATATACAAG
CATCTTGATCGTGAAGGTGTCAATACAAGTTTGTATACGTTGAAATGGTT
TATGCAATGTTTTCTGGATCGATTACCGTTTTCATTAGTGCTTAGATTGT
ATGATGTTTTTATATTGGAGGGTGATCGCATTTTAACTGCTATGGCTTAC
CATATTTTAAAGATGTTTCGAAAGCAAATATTGAAGATGGATTTAGAGGG
TATTGCTCCTTTGTTACAAGAAGATGTACCTGGATATAATTTTGATAACG
ATGAAATAATGGAATCACTCCAAGAAACTATAGCTgaattaaaacgtgga
aaacttgaTAAAGCCCCTCCACCTACTGAGGCTGAACAACCAAGCAAGCC
ACTAGGTACGTTACCTCAGCGCAATTCGTACATCACTGCATCTAAAAGGG
CTAGAAGTATAGGTGATCGTAAAAGCACAATCGAAGTCCCAATGGGTCGC
CCTCCCTCGCCAACACCTTCAGATAAGAATCACGCAAATGGAAACACCTC
ACCTGAGCAAATTGAATACAAAGGGCTTGTTATTAAACAGCCGAAAACAC
ATGTGATCACACAACCAGCACCTAATCACTATGATCGCAAGGGGAGCTCT
CCTCAACCTCTACCTTCCTATTCAgagtttattgaaaagaaaaatcagct
GCAAAACCAAATATCAGGACATTCAGACACTTCATCGTTTGGTCAAAGGA
GTCCACCCTTACGTTCGGTTCCTCCGCCAGCAAGTTCTCCATTTTCACCA
CCAGCAGGTTCACCCTCTCGTAATAGTCCAATTCTTGTAAGAAGCTCCAT
GAAAGTTGATaagaagtccaaaaaaggtaaaaaagaaaatgacagtAAGT
TTTATGTGGAAGACACTGTTGATTTCCATTCAAGCTATAGCATCAGTTCT
TCCAACTTTAGCGAGCAAATGTATCGCGGCCCAAGCCCTACCTCACCGAC
TATATGGTCTGCAGAGGTGCAAAGCTCTCGTGGATACACAACATCAGTAT
CATCATCTGAAGACCAACGATCACCAAGACCAAATGGTTATTCAGGCCCT
AAAATGCCCCCTCGAGATTATGATGACGATGACGAGGAATTGCATCATTC
AAAttcgagaaaaattaaaaacaggaAAGGTACAACTCATAGAGTTTTGA
ATAGTGATGGTTTGAGACCTAACGAGGCTGCAAATGAGACACGATTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007595-exon-sc0000078-1491911889:501112..501223 | TCONS_00007595-exon-sc0000078-1491911889:501112..501223 | Clytia hemisphaerica | exon |
| TCONS_00007595-exon-sc0000078-1510915933:501112..501223 | TCONS_00007595-exon-sc0000078-1510915933:501112..501223 | Clytia hemisphaerica | exon |
| TCONS_00007595-exon-sc0000078-1575043694:501112..501223 | TCONS_00007595-exon-sc0000078-1575043694:501112..501223 | Clytia hemisphaerica | exon |
| TCONS_00007595-exon-sc0000078-1491911889:511158..514365 | TCONS_00007595-exon-sc0000078-1491911889:511158..514365 | Clytia hemisphaerica | exon |
| TCONS_00007595-exon-sc0000078-1510915933:511158..514365 | TCONS_00007595-exon-sc0000078-1510915933:511158..514365 | Clytia hemisphaerica | exon |
| TCONS_00007595-exon-sc0000078-1575043694:511158..514365 | TCONS_00007595-exon-sc0000078-1575043694:511158..514365 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:501112..514365 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000195 | Rab-GTPase-TBC_dom |
Blast
BLAST of TCONS_00007595 vs. Swiss-Prot (Human)
Match: US6NL (USP6 N-terminal-like protein OS=Homo sapiens GN=USP6NL PE=1 SV=3) HSP 1 Score: 436.032 bits (1120), Expect = 4.116e-136 Identity = 209/364 (57.42%), Postives = 270/364 (74.18%), Query Frame = 2
Query: 176 RAAIVARYERGPEGP-IEPWEDASFIVYQVCDRYGFLHKNPLPQYE-KDEKVMELERERAKKWLKMIAGWETYFIDNKVSEKLRRRVYKGIPDSIRGSAWKMMLNIDHVAKA--GVYTRFKNIALENSPDIRQIDLDVNRTYRDHIMFRDRFSIKQQALFNVLAAYSLYNTDVGYCQGMSGITALLLMYMNEEDAFWALSELLNDKKHAMHGLFIPGFPKLLRLQDHHDKILKKFLPKIYKHLDREGVNTSLYTLKWFMQCFLDRLPFSLVLRLYDVFILEGDRILTAMAYHILKMFRKQILKMDLEGIAPLLQEDVP-GYNFDNDEIMESLQETIAELKRGKLDKAPPPTEAEQPSKPLGTLP 1252
RA IVA+Y+RG EG IEPWEDA ++VY+V DR+GFLH+ LP + E+ LE ER KWLKM+ GWE Y K +EK RR+YKGIP +RG W ++L I + + +Y++ K+ A SPDIRQIDLDVNRT+RDHIMFRDR+ +KQQ+LF+VLAAYS+YNT+VGYCQGMS ITALLLMYMNEEDAFWAL +L + KHAMHG F+ GFPKLLR Q+HH+KIL KFL K+ +HLD + + TS YT+KWF QCFLDR PF+L LR++D++I EG+R+LTAM+Y ILK+ +K ++K+ +E + QE + + F++D ++E LQ ++ ELKR KLD P E E P KPLG LP
Sbjct: 15 RAEIVAKYDRGREGAEIEPWEDADYLVYKVTDRFGFLHEEELPDHNVAVERQKHLEIERTTKWLKMLKGWEKY----KNTEKFHRRIYKGIPLQLRGEVWALLLEIPKMKEETRDLYSKLKHRARGCSPDIRQIDLDVNRTFRDHIMFRDRYGVKQQSLFHVLAAYSIYNTEVGYCQGMSQITALLLMYMNEEDAFWALVKLFSGPKHAMHGFFVQGFPKLLRFQEHHEKILNKFLSKLKQHLDSQEIYTSFYTMKWFFQCFLDRTPFTLNLRIWDIYIFEGERVLTAMSYTILKLHKKHLMKLSMEELVEFFQETLAKDFFFEDDFVIEQLQISMTELKRAKLDLPEPGKEDEYPKKPLGQLP 374
The following BLAST results are available for this feature:
|
