TCONS_00007589 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007589
Unique NameTCONS_00007589
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length732

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007589 ID=TCONS_00007589|Name=TCONS_00007589|organism=Clytia hemisphaerica|type=transcript|length=732bp
TTGTGTTTAGAGGTGTGTGGTGGAGCAAGACCACACAACATCACAACGCA
GAAGGCTTCACCCCTCCGCATGGACAAGATGGCGGACAAAAAATAAGTAA
CGGTAACAAGAATTTATACTAAAGAAGAACacaaaaaacaacaatcttaa
aaaaaaaacacaacaagCAAAATGTCTTGCCatcaacaaaaaatgtcttt
acAAATGCTTGTGGAAAAACTTCACGTACTTTTCGCGGAAGATAAAGTCA
ACGTTGAGGAAGTTCAACAAACCATGGAGAACTATCAATCAAATTATCAA
GACTGGAAAAAATTCGCTAATTTTGATCCTCACAGGTACACGAGGAATCT
AGTGGACACTGGCAACGGGAAATTCAATCTTATTCTGTTGTGCTGGGGTG
AAGGTCAAGGAAGCGGTATACACGACCACGCGGACTCACATTGCTGGATG
AAAGTCATGGAAGGTTCACTTGCAGAAAAATTGTACGACTGgccttgcga
aaacgaaagtggtgatgacgtcatctgtgatcaaaacaaactttcgCCAC
GTCAAATTACTGAATTCGATAAAAATCAAGTCACGTATATAAACGACACA
ATCGGTCTCCATCGGGTAGAGAACAACAGTCACNAATAAAAGTCCAGATA
CGACATTTTCTCAGAAATGGAAAAACCTTTGAGTACAGTctaactttctc
taattcgaacctctattattcgaatctttctg
Run BLAST on NCBI

protein sequence of TCONS_00007589-protein

>TCONS_00007589-protein ID=TCONS_00007589-protein|Name=TCONS_00007589-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MSCHQQKMSLQMLVEKLHVLFAEDKVNVEEVQQTMENYQSNYQDWKKFAN
FDPHRYTRNLVDTGNGKFNLILLCWGEGQGSGIHDHADSHCWMKVMEGSL
AEKLYDWPCENESGDDVICDQNKLSPRQITEFDKNQVTYINDTIGLHRVE
NNSHX
Run BLAST on NCBI

transcript from alignment at sc0000078:368223..387985+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007589 ID=TCONS_00007589|Name=TCONS_00007589|organism=Clytia hemisphaerica|type=transcript|length=19763bp|location=Sequence derived from alignment at sc0000078:368223..387985+ (Clytia hemisphaerica)
TTGTGTTTAGAGGTGTGTGGTGGAGCAAGACCACACAACATCACAACGCA
GAAGGCTTCACCCCTCCGCATGGACAAGATGGCGGACAAAAAATAAGTAA
CGGTGAGTATTTTCAGTAcagtatttattttttgttttccgcTTTACTCT
TTTGGTGGTATCAAGTCATAAAGATCTTCTTTTCTCCAATTATGGTCCAA
TTAAATTGGATATATTTTAGCCATAGTTTCAGAAGCGAGAAGGGATGTCT
AACAACATcttcagttacatcaatatgccttcttacctgNttgtctcggc
ctttttataatgagcgagacatacgttctctgattacgcaatttttatat
tgacattttcgaggcattttgatgtaactgatctTTCCTTCACTTCACAG
CCACTTTTTTACAAGGACCCtggccgacgcaccggactgtccggtgtatt
tgtccggtggtaaaaagtatcctttcgctacactgGACACAATAGGTCCG
GTGTCAGTCCAGTGTTgtatacagggaattttggacgccggacacttatg
aaacaaaaaattaagaaacactgGATGCACCGGACTGGTGTTTTAATTGt
gcggtggaaaaaaatatccttctccgacaccggacattcaacttccttaa
gtccggtgagTCCGgtggtgaaaaaaattctcattttacaccagactttc
gcctgtccggtgttcgttaagtccggtgcgtcagcAGGGTCCTCTTTTAC
CATAGTCTGAATCGAAGACCTCTATCTATAGATATACCACCtatatagaa
aatatttttgctagaggatgagcagaagcctacttTTACAAATGCCTCTG
ATTATTGCAttgtttaaaacaaatttaCTTGTTGGGGCTCGTTTTATTGC
TGTATTGCATCCAATCAGATTCTAGTATTTTCCCTCACACATAATCAAAA
CAGACAATTTGTCGTTTCTGATTGTTTATTGATAAAATAACCTGTTGCat
gttaaaaaaaagaagaacaaaaaagtttgacattttttattGCTCTTTAG
GGAAAATACACCCGTATATACGGGTGACCTCCAGGAAGACCCCACAGAGA
AGAATTGGCTCAACGAGAGCTTTTAAAAGTTTGGAGTTTGAGAACATTAG
ACAAATTGGAGTTCCAGATCTTATTTACTTTATTGCATGCCTTCCACGCG
AGGCCTTTTCTAGTTTTAAAGTCGCTTTCAGAGTTATTAATGTAGGATCC
TAAGTATTTGAAGTCCTTTACTGCCTTTATGTTGACACCGTGNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCTTGTTCTAATATTATAATAGAAAAA
GTGTACCTAATCTATCTTCGATAGAAggaaaacttttataaatagtGCAT
TATCGaaacattatcaaaatatatctcaactaataataataataatgtat
acAAGTTCAAGGCACATANCCTAATggctgaaataattttttccggAAGA
CCAtataactttaaaattttgaaccttttttcTCTAGATATTGAGCTCTC
TAGAGAATATTTGCCATATTTAAATTCAAGTGAATTGTACGCAAAAGTTA
TGGAtctaaaaagttattaaaaNTACAATTGTCTTGTCTCGAATCTTTTC
GGatgttttttccaagcttcgttgagtctttctttaaagattttgacaGT
CTTTGCCTCTACAACATATANTATGGATCTAAAAAGTTattaatcttgta
gaagaaatattaaatttgcttctcttgaaaactaaaaataattatattct
cTCATCTCTTAACAagaacttcaaaaaaccatGACATTAGACATAGACTC
AAGCTGAAAATTACCAGCAAACCTGGTACAAGAATAATCCTTGTTCCGCt
aacggtaaattattctccaaaGCACAGCAAAGCATAGCAAAACACcacaa
aatgatcaaataaaaacattgatcTAAACCCCTGATTTACAGTGGCTTTA
ATGTATTGGGCTTTGCCNGTAGTAGTGGAGATGTTGTATACTTGGACCAT
ATCACAAAAGAGTCTCCTGAAATTTCAAGTGTGGGGAGGTCAAGTATGCG
CAAGCGTTCTTTATAGGACATATCTTTGCAGATAGGTACGAGTCTTGTGA
CGCGTCTTTGTACACcctcaaatatatattgtttctccactattactttt
cttctatcttcatttggattaggtttttctttcacataccactatttaaa
ttccctttaactttttgctaaattaccctctgtttcggaatgattagAAA
ATTAACAAGACGactcagagtcgaaaatttcgcaaacTATTTGATTATAG
TGGGGGCCACTACAGTATGTCGCAAAAAAGCTTctcgtgtgcagcagctt
gtgcaaagggattttatgattgaatattgtttcttgaatgtagaagatca
aaatttgagaggtggggccgggtgNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAActaacgtcattggttactatggcaa
ccaaagtaaaaagtcgtcaaaattgaaaaaaattttgttccattcgaaag
agcatgaaaaactgataaagaaaacgatctcaacctatatctgaaaatga
atatatcatgagatattaaggaaataaggcaaaaaaataaaaatttgtca
aaattcaaattttttttttggaaagaataccttccagtggtgaacataaa
atattattacgaaaaagtcagaaaatcctttttaagaagtgtattagcca
aaattgatatttttaaattttgcctgtaatAATGTGCCAACCTTCGACAG
GCAAAAATTGAAGATATcaacaagctgctgcacacgggaagacatagtgg
cctctactattattcataaatgaaataatcatattaaacGACTGGGGAAT
ACAAGGGTTGAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGAATGTCAATCGGAACCTCTAACAGAGAATAAAGTTACCCTTAC
AGAGACAAGGCGAAAAAGTGACTCTTAgagcacattttcaaaaaatgttc
taacctttttttgacttttcaagttTCGTATCTTAAATAATTCCGAGACT
TGGGAAGGTCAAAAACAGAACCTTAGTATCAGCATATACCTGGTATATAC
CTATGTATGCCTAAGTACACCCCCCCCCACACCTTCGCCATTAAAAGAAT
GCAATAAATAGAACGGGGCTAGAGCTATATTGTCACCCAAATGTGAACTG
TCCCAGTGTGGCCAAGTTACATTTCAATATCATACCAATATCTTTGACTA
TTTACAAAAATATTAAAATGTTTACACCTTGTAGGATTGtagataaatca
aaaataactgtTTCAAGGCTCgaaaagcacaaatttggaaaattacataa
atattttaaatttgatggaaattaatctaaatttttaaggccaatttttt
ttctgcaaaaatgttTTATCTTAAAGCTACTGCTACTTTGTTACTGCCGT
TACTTGCCTTGCATCCATATCATTGAGACGTGGAGTTacatattttttga
gaatttattgATTGACTAGTAGGAAGTCGATTTTGGAGCGGGTCGAtcaa
atttgattgacttccatttcttttttttgatgaATAACCAATCAATTTGT
TCCAATATTCGATAGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNttattcctatctctaaagaagggtgtcggaattagaagagggat
gtcgacattagaccaacttacggtaccagAACCCATCGATAGAAAATAAA
TCAATTGTTGAGTGGGAGCCTGGCACTGTATaaacaagccgtatatgtat
aaaagttgcgaagcgatccagagcctccctcaattcgcaagttgcaagca
aaacattttagacacacaaacactgtatattcaacaacatttttgcagtT
TTCCTTTACATTCGCTCTAGTCTTTCCAAATATCGtatcatttgcaaatt
ttttatagtcCCTCTCTATAAAAATGACATCTGTAGTCAGTGTAGTATTA
TCtctcattgatgaaaaatgaagcttcaaccgttctatttttcattttct
aaaataaataacaaaaagtttaaagaaacaacaatNNTTGCATATAACTA
ATAATGTTAAATAAGGATATAATTTCCAACAAATTGCAAGgagggaaaaa
aatcttttgggaaacatttttgtaatctgaaagaatgcctAAAGGGAAAA
AAACGTATGcggaagaaaacttcaaggtgacaacaaaagttttccatatg
AGACAAAACGTTTCCAAATAGCACAccgttatgcaaacgtcataattatt
acttttaacacttgaccgaaaatcaatcccacaatccttttcgtcttaat
taaaaagtcgtgaaagtcattactttttctttgtagttGAGTGTAATTTG
CACGCAGGCGTAGTTAACGcgaagggtgatgggattgaatttcggtcaaa
cagaaaaatcaatgtctatttttagattcactgcggtatgctattgacaa
agaaaactttccacatttaaaacacaattatataccgtgagatcaggtaa
cttgcatcgagtagaggcaaacatgcatagccctcaaataaatgacctgt
ctggtcattaatatacagttaaatcaaaacaaaaatggtggagttcattt
gttttgaaattttgttgctttgattggtcagtcatttgatggctttgtaa
gtttccctccactgatgcaagttaccggACTTCATGGTACCAAGTTTATG
ACAGTTTTCCACATTTGAAAAGTATGcaaacaaaaatgagaaaagagaCT
GTTTTAACGTTTCCAGACTAtctaaaaagaacaacaaataactatttaaa
agcaacaaaaaaaagaacgacaaaccctaactATCCAAAAACAACATATT
TTGCCGTCCCACAACCCCGACCGGAAGTGgctgtaccacccctacagaTT
CATTCATCATTGTTTGTCACAGGAATTAACTACTACATGTGGTTTTTAAA
AATGAACGCAAAATTATGCATAcgtataagtctctatttgggtgagctgg
aaggATTAGATGATCTAccgttaaaaaaaacaaacttcctcgtaactttc
tcgtgtccatcattaaaattttattacgcttcaagtcatatgattaaaat
aatttgggcgcttagcctggtttccccttccttatttatcgaaaacacac
gctctaggcgctaagaggccgcacgccgtgatggccagtaccgtaggatc
gtctaatatcgacatgcgtcttctaattttgacatagctgtaggctggtc
ttcgaaataaaaaatcaaacataaacaaatacataccaaagttatcaatc
aatcactaaattgtactctccctatcacgtaacagattgttgaaatgtaa
gaaacgtgaagtgggtttttttcgaaaagaaaactttaacgatgcgtagt
cactaaaaaactaattaccttaagggaacttattttggcgggaactaatt
ttggcgggcagcaaatatcctaaaaaaattaattttggcgggaactaatt
ttggcgaatgacagcgtaaatctgttctattttgccttattttgagcaat
tttgattaatttcaggggttatttaggcagggaaacaaaaaatttaattt
tggcgagtcagcaatatatttaattttggcgagaactaattttggcgaat
tttgtctaaattcgccaaatccgccaaaatcagttcccgccaaaataagt
tcccttaaggtagcatgctttcaacgaagatgcccaaatcacaacaacat
tttgcacgcgaggaattttttagtagacctttttaccgtgaaccgaaaat
aattaaaagaacccggtttccttatgaatttgaaaagggaccggaCACGT
GTGCTGGGTGAggcgcctagaagtttaacgccgcctcttagcgcctagag
cgcgtacttgcaataaacaataaggacggggaaaccaggtcgactaagcg
cttgaattatttttatcacgtgacttgaagagTAATTGcctaataaagtt
gtaaaattttaatgatggacacgagaaagttacgaggaagtttgtaTGCG
TTTCATGATtgtgttgtgtaaaattgcTTATAATTTAGCTGCTTAATTGA
atggattgcaatgtttactgaacttctagtttgatggatgaacttgtttg
ataagaatgataccaagaatttcaatcTTGCATGTTCATAACCTGTCAGC
TCAAAATATGGCAATAATGGGTATGTTTCTAATGGGGCATCAGAGAACtt
catagaaataaataagtGTTTCATCACATTTATAACTGGATCATTTTCAG
CACTACAGtattttcatattgacaaaCAAACTTCCGAAAGGCATCAACTG
AATACAATGCTTGaataacagaattgaaaaaaNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTGTTGGACAAATTC
TGTCTGGAGAAGCTGACATATtattaaaataatcaattttgcaGTACAGT
AAACACGGCtagcaaaaaataattaatttggtTGAATCGCAAACAAAAGT
TGCTTCAATATACggtatcttttaaacagaagGGCAAGCAAGGAGgatat
accttaagtggataaattttggcgtggatttaatttggcgattggccgaa
atacgatttttggcggggatttaatttggcgatagatcaatttcgtaaaa
tttgacgaggatttaatttggcgaattggaaattttgtcacactgaaata
gtaaaaattactcaaaattagctatactaaaaagttgtgatttttcacat
aattctatgtttgttaaatttggcggggatttaatttggcgaattgccga
atttggaaattttggcgaggatttaatttggcgaattttggctaaattcg
ccaaattcgccaaatttaatcccagccaaaatttatccacttaaggtact
cGAAGACCAAATGTAAAAAATGAGTAGTAATTTGTAGcacaataaatttt
aaaattgacttcCCTGATGTGAAGACCAACCAAACAATAAACAATAACAG
GCCAGTGTCTTCttttgcttttctttctttgctgtcgatttgattgattg
attgaaatgaAAGTCGAAACCAAACCAATGACCAAAAAAGAACGATGCCA
ATCAAGGATCGAAGCCAAGAAAAACAGGACAAATTATAGTAAATTGTAAT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAATTTACTATAACG
GAGgtaatttgttttatcatttccCGGGATGTTCTTCACGTTTGTTATCT
CCTAAATATTGACGTCACGGGTCACGGAGGGTTTACTCGTTCTTCGTATC
ATTCTGACGTATACGTCTAATTTGATATGACGGAGGTAATTTGAGTTACC
ATTTCGCTGAATATCCTTTGTATTTTATCTCCTTTATATTTTGTTATCGC
ACAACTCGGAGATTCGAAACGTTTTTCCCATCTCCTGCCTTATAGATGGT
TGAAAGAATGgaaagttaaaggtacgcacacacgatagcaaaactgcttc
gctcatgtacattcgcttcgcaaaaagttTGTCTTTGAGTTATATCTGat
caatcaaaactcaaatccaTTGTATATACAGTATCCAATCAAAGTTGATA
CAGATTTTACAGTAAGATTTTGATATAGACTTCAACAACAGTCTTGCCGT
TTTCCCTCACATCCATTTGGGTTGACCGGGTGAAGGCTCGTACACTTTCC
AAGTGAACCGCTTTGAGTGGGAATCCTAAACTTTGACGCCTGCGTAGCAA
TCGGTTGGCAAatgatatcatactccaggatgcattgtctccttattttc
cccctattttctactttcctatcttctatcctgattttctatctttctca
agtttttctaactgttttctaagtatttttctgaaatttgcccgtacaGG
TGAAACAGGTCTCccaccccggctcgaaccacaaaatgcaagcaaccttg
gtttgcAATCCCAATGCTTAACCGCTTGCAccaacgagacacggcagaaA
GCTGTCATTAACagatacttatagcgtgtaatttacagaccataattaag
aaagctcccaaccctaccggtgcccctacaaggatccctacggcgCTACA
GGATCCAAAGTTAAATCTTAGGGtacgaatgcccctaagaaggccttcgg
ccttatattgtgactctcgagctccaaccctaaccctaactgataataac
cgaacccctgTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGTT
GTAGTGTGTACACAGAATATggtatgtctttaagaacaaagttctaaatg
acttttaaaagttgttttgtaaatatttctctttgaattaagaaattcca
tcttttatcattctaatgattataatatttctttataagatgctttgttg
tctttttaatctttgtgtaaacttgcataggtttggcatattttccaact
aaatccaaccacagctTTTTTGTtctgcatacaattcaagatagCGGACA
GAAAGGGAAAAAGCTCCATAGATGTTATTATTTCTGCCTTgttaaaacaa
caaaatatttttattcactttcACCAAAACTAGGTTTCACACCaagattt
ttgtaatttttgcctaAACGCTTATTTATTTTCAGGCCAGAAGGAATTCT
TTTTTTCTGtgttcatatatttttttggtTGAGAAATCTTGAGATAGCAA
ATATATACTCCAgaaataaacttctttcttacAAATTTGCTGAGTCTCTG
ACTTTATATAGAACTTTAGCTAGGCGAACAACACAAtgtattaaaaaaca
aattacCGCAACATACATTAGTTGTGCTCGGTCAGAACACACAGGATACA
TTATTTTGTTTCTAGGCAGCAGCTTCAGCATTAAAaccctaactcttcat
acaaaatttaCAAGAAACGCATATTCGGACCCAATGCTACACACAAGAAC
TTAAGCTGAAGTCCCACAAAAGCGGGACAAGAATCAGTGTTTTTGAAGTT
TGCTAaaatagaagatctttcaaatttagTTTGTGAATAGAGCAGTGAAA
CATTCAGTCCAGCAACGGGGTTATTTTAGTCAAGTTTACTTTCTTGTCTG
AAACCAGACTGGACATCTCTGATAATCCATATCTACTCTAATACTGGCCG
GAATCTCAAAGTCGTAACACTTGTCAATCTACAAATTTTAAGTAAGATGG
TTTCCCCTAATAAAAAATGCTGGAAGGGTTAACTCAAATAGATTTGCATT
CTCTATAAATATTCTACTTAGACTCACTTATAGACTCCATTATAATATTC
TATTCAATCAAATTCTTAAAACTTTTTCTGAGAATGAAAATGAGGGAAGA
TAACTTGGTTGTAGTATTGAGTGAAATACAAAATGTaggaatagaaaata
aaatattatcatACAGTATTTTGAAAAGTATCAGTAActgtttaaaataa
tttttgcttgATTATTATATGTAATACTATATAAAAATGATAAGAAagtc
aaaaatgctgaaaaagtAAATGGTTAAAAAACGTTCATCTTGTCAAAGCT
GCTTTTCCCTGTGCATAATCATTTTAAACAAAGCcacatgattttttttg
ttgtttagtGAACATCTATAGTGCATTTTCAGGGCTTTAGATGAAAGTCG
TGATTTGTCTCAAGAGCCATATCGAGCTATTATAAACTTCTGCTATATGA
CTTATGATTGAATCACAAGGAAGGCTGActgtcaaaaataacttaaTTAA
AGCcaaattttagtatttttactTGGAAATTCAGTTTGTAGGTTGAGCAA
TATATATGATTTTACAAGTCTGTCACTGATATATTTCCCATTAGAATTGT
GGGTGTTCCTTATTCATGTTAGTATCTTCCATGAATTCACAAAAGAcgat
ttattatttattttcaataactGTATAAATTATTGATTTCTGAAAATCTT
CCTTTTAcatctttgaatattttttatcaatcactttttCCTCCTTTTAC
ATATTCACTAACATTTTCGATCTTAAAAGTCTGTAAAAGTGAAACGTTTT
TCTGGATAGAGTCGAGTAGATTGGGAAAATTATAATGAACTGGTTACGTT
TATAAGTTGTTTTTATAGTGTTGTTATATCTACAGATAAAATGGTTTTAT
TACAGAAATGCATATTATGTAGGGGTGATTCATAACATTATTTGTTCTTT
TGACTTCCTTATCATTTCTCTTGTTAGATAAGGGGATTTTATCTAACATT
AACAAGCAAAAATTGTAGGAAGCACTGCTAGTCCTCCATATAGGAATGAA
TTAAAAGAAAGTAAAGCCTAAAGAGGTAGAAATCAGAATATTAAGGAATA
CTTTCTTATTTTAGCTGTGATGTTTCGTCCGTTTCGTTgcgttttttttt
cacttttattcgaactcgaacaggaagttatttgttcgaattacagcaGA
TATGGAGGTTTTTGCGAgtgtttctccttgacgggaattgagaattagtt
cgaatcaTAGAAAGATTTTGAATNTCTTTACGAgtgtttctccttgacgg
gaattgagaattagttcgaatcaTAGAAAGATTTTGAATCAACTATGTAC
TTCAATTTGAAGcaattcttatttaaaaatatcGTGTGCCTGAGTGGTTG
TAGTTTCATTTGCTACCTTTGAATCTCAACCatttatataatttgttttg
aGGATGTTTTGATgtctaatttttcaaagagaagCTTGTTATACTCGGTC
AGTGCTTTGAGGTTATCGTTTAAATGACTTTGTCAATCACTTGTCATTGT
TCATTTTGTTTCGTTTTGATTGTTACTTATTCAATTGAGTGATATTCAAA
ATCCTTTGTTGGCatgtcaaataaaaagaaagttcgGCTAACGGCATAAA
AGTGTGTTAATTAGATCAACTGAATCTATCTGTCGCAAATGCGTTTAACA
TGTCTGCAGTGCCAGGGATAGATACGTGGAAATATATGATAgtttaatat
aatttcaaaattcattacgAGATATAGATCTTATGATGAAGCGGTCGTTT
TCTGGGAGAGGGTTATTTGAATGCACTTTATTGTAGAGAAATTTGTACac
ttatttttctcattttgtatTTTCAGGTAACAAGAATTTATACTAAAGAA
GAACacaaaaaacaacaatcttaaaaaaaaaacacaacaagCAAAATGTC
TTGCCatcaacaaaaaatgtctttacAAATGCTTGTGGAAAAACTTCACG
TACTTTTCGCGGAAGATAAAGTCAACGTTGAGGAAGTTCAACAAACCATG
GAGAACTATCAATCAAATTATCAAGACTGGAAAAAATTCGCTAATTTTGA
TCCTCACAGGTAAATCTACATGAAGGCCTTATTTTGAAATCCGGTCAact
aaaagatgaaaaatgcaaGAAGTGCTGAAATCTTTAAGAAAAATTGGAAG
ATAATGCTCTTCGAACTATAAATCTCCCTGTAAcacttttgtaatatttt
tttgtaaagttAATACCGTTATTTTGGAAATCTTGGGATTGGACACACAA
AAGTTTTTATATGACTGCGTTGTTAGTTCAACGATTTAACTGTGCACCAG
TGCAtgtttgaaattcatttttataAATCTTCCTGAAGCACTTTTGTAAC
ATTTTCCTACAAGGTTTGCTTTTGGAAATATTGCTGGAATTTGCGTTGTT
ACTTCAACGAAGATTAACTGTGTATCCATAGGACTCTATACACgtttgaa
attcattttaaaGGGAATTCCTTTACTTGCACTGTGAGTCGCATGAATAg
atatcaaaaattgattttcctaCCTATAAATACAGTTTATTCCCTAGAAA
TGTAAACCCTTTGATACAGTTACAGATATCATCCCATAGACAAATTTTGT
GCTCATCAAATTTTGATACGTATTCCAACACTGACGTCACACACCTCTCT
CACACCTGCTCACACCTCTTTTATGTCATCATGAGAAAGAAGTCAAGAGA
AAGATTTTGATGTCTACATAACTATCCTCGTGACATCACAGACTTACTAT
ATTGTTTTAACATTCGTGATGTCCCAAATATTTCTTCTCGTAATGGACAA
TGTTGACCCCTTTTTGATTCTGTGAAGTTTTTTACACCCTTTGCTATCAT
GATATTATTGTATTCTTGAAACAAACAGtctgaaaaatgttttcttatcC
CAATTTGTAGTAattggattttttctcaaaagatgTAGGGAAACTTGAAT
CGAAAGAATCTCATTGATCTTCCAAATAAATTTGAAGTTTTCATagctct
tttctttttataagaattagcgcttataagaatatcagggtgaaaatcga
ctaattgttaagaatatctttagAATACCTTGGGTGGAATTTTTCGAATT
GACAAGTGTATAGGGTGGGAAAAAAGAAGTATAAATTTAAACAGGAGATG
AGTTGTTGCGTTTATTATACGTAAAACGTAGTGTTTCGCTAACATATAAA
AAACATTGTGATAAGACTCGTCTTTGactaataaatcaaaaataagaata
tgttaagaatatctcACCCTCAGATTCAGAAAGTTGCTAAGAATACTTCA
CCCTCTGCTTAAAAAAACactatccttataaaaaaagcgtgtatataaaC
CGTTACAACAAGTCAACAAAATGTGCTCATTCTAAGGAACAAAATCGCAT
TatacatttttatattttcttcacCTCCAGGTACACGAGGAATCTAGTGG
ACACTGGCAACGGGAAATTCAATCTTATTCTGTTGTGCTGGGGTGAAGGT
CAAGGAAGGTCAGTTCTCTTTctcatatttttattatttagaagTTCCTC
ACGTTCCGGACAGTGCAAACTAACCGCATAAATCCAGACCAGATTGAGCT
ATTGCCGTGAAAGTCTCTTTTTTAATCCAGCGTTCGTCAAAGTGTTAGCT
CGATAATGGACACAATTCGGAACAGACTGGTCCGTTGCATCGAGGATTAT
CTTTGTCCGCCTCTTTTAGAAGTGTCTGTTAATTAGAGTTTACTAAATAG
TAGTTTATTTTCTATGCTTAAAAGTGAACCCATGTCGTCGAATTGAGTAG
TTATCAGCTGGAGTTAAAAACTTTAAGAAAAGATTGTCTTTCTAACGGGA
AATCCTCTTTTTATGAAAATGCTTCGAAGGAGCTTAATGAGGAGCGAACC
AAAACAGCTTCTTGTTAATTACTTCTCTTTTGGTCAGTGAAAAACCACAA
TCTTTTAATACTTGACTTGTGGGGCGTCCGAAATTCATCACGGTTTATTA
CTAGGGTTTTTATGTGATATAAGTAACTTTGTATAAGCAACTTCTTTCTG
CGCTTCATTTGCGCTTTTCTAAGAAAGTTTGCGTTCATAAGGCTCTATAC
TCACGTCAAATCGGCTTAACTCTGTTATTTGTACTTTCGAACGAAAATGA
CTAATTGGACACAAATTAAAATGACGTGATTGTAAGCATAATTTTAGCTT
CTTAATTCGAGATCCTCTACTAAATTCCTTACTAGTGTATGAAAATAACA
TGATTGATCGTTACTagtaaattttttgtcaaaatacaTTAGCTTTTCCA
TCTCTAGTGGAGCGACTCTCTAATCGctgttcttttcaaaaaaaactcaa
attctagACATGGATTAAGTTTTGTTTAATTACTTCTGACTTTGCAGGAG
GTATTTTTAATTCTTGAACAAAATTTCACCGCGGCTCCCGATTTGAATAC
AAATTGACTGGCTTCTTTATAAAAGGGTGATTTGGTACTGTGGTGAATTT
ACCTTTCGCCCGGATCGGCCCATGTCATATATAAGGGGAATCGGCTACCA
TGTTACTTTGATACAAAAGTACTgggcatagatttataaagcccgaaggg
ctagattttgTGCTTtcgctgaaaagtgtgccgaggttaggtaggaaatc
ctacctaggtcacgtgacattacaatcgAAATTCAGCACTTGGCCAATGA
GAAGCctcgcaggttttcgaaaacaatagcagtaatattttttcaatatt
tatttattttttgcttgaaagagcttaaggcacgacatctagcccttcgg
gctttacagaaatatGTGGTACCAGGAGATATGTCAGATATTGCGGTAGG
GTCGACTATGCCACGTTTCTCTCAGGTCATTCGAGTGACATTATCATGCG
TTATCAGCTCTATGTATCACGATCAAAAGATAGCAGAGTCTAATGATTTC
TCTATCTTAAGATAACGAAAGCTGTCAAGAGATACATGCCTCTGACCTGT
TTCCGCCGTTTGCACGAAACGTTCTCCTCCCTTACCTTCAAACAATTTAA
TTTCCCTTTCTACAGCGGTATACACGACCACGCGGACTCACATTGCTGGA
TGAAAGTCATGGAAGGTTCACTTGCAGAAAAATTGTACGACTGgccttgc
gaaaacgaaagtggtgatgacgtcatctgtgatcaaaacaaactttcgCC
ACGTCAAATTACTGAATTCGATAAAAATCAAGTCACGTATATAAACGGTA
GGTTTCTTCATACTTATTTCTTCCCATTTTCCCTAGACTATATTTTTTTA
CGTGTATGTGAAAATCAAACAAACGTGTGCTCTTCAAAATATACAGGTTG
tcatagtttgtttacatattttcgggaaagattttccaaatgaattcgCA
CAAATCACCTAATTTCGGACTCAAGACCTGTCAGCTGGTGTTGCGTATCA
TTCGAGctaaaaaagcaaattttctttaaatgcCCCTTATATTATACACA
GTGTgaatgtaaaccacactgaaacgaccgccttccatcacgtaTCACGC
TCGCGagagagcgcgcgcacattattaacgcctacatgtcatctccagta
cattttagattactAATTGAAAGCAGATTACAAtgtagtcatttttcatg
tctcgattattcaattccgaataaaagacatccaggaaaaaaaagagaaa
cacctgggtaatctagttaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttaa
aaaaaaacgaaagtaaatggtagacaaagtaatgagccaaggcaaaacga
gattagcgtaccactatgaaagaaaccgcctccggcggtcgattatTTAT
TCTTCTTTAGGCCATCGTTTGACATtatattatgtaaaaaaaaccttttc
ctTGATGAGATGgttcaataaaaatatttggctaattttttggcttaaat
atAATACTGTACGTCATTAGCCAGTTGTTAGTTTGTGgagaaaatattca
cacaaacgTTCTCCGAGTCACGCATAATAAATCGTTGACatccttttttt
ttaatctctTCGCAAATAAGATCAGCTTCAACAAGTAAACACCGGGAAAt
gtgccaaaaaaaattgatttcccTTCTTTTCCATAAAAGCCATATTTAAC
AGATAGATCACAAACATCACAGTAGAAAATACGGTTTACGGTTTGGAGTT
GTTAGGTTGCTAGAGCTTTCCAAATCTTAATTTCGTACTTTTCTCCAAAT
AAAAGTCCAGATACGACATTTTCTCAGAAATGGAAAAACCTTTGAGNCCC
CGGTCATAAAAGATAAGGGAATATCGATTCCCatcaagtttcagtccgtt
atttttacccccactggctgaaaaaattctaccgggtctgtgagaagggg
gtgttttagaAGAAATCAATCTTCTATTCTCTGAAATTACTTTTAAGTCT
TACTTACACTCATTTtgagggtactatgatgtaggaTTGACATTTAATAC
TTTCTTACTCTTTCTTCTTTAAATAGACACAATCGGTCTCCATCGGGTAG
AGAACAACAGTCACNAATAAAAGTCCAGATACGACATTTTCTCAGAAATG
GAAAAACCTTTGAGTACAGTctaactttctctaattcgaacctctattat
tcgaatctttctg

Coding sequence (CDS) from alignment at sc0000078:368223..387985+

>TCONS_00007589 ID=TCONS_00007589|Name=TCONS_00007589|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000078:368223..387985+ (Clytia hemisphaerica)
ATGTCTTGCCatcaacaaaaaatgtctttacAAATGCTTGTGGAAAAACT
TCACGTACTTTTCGCGGAAGATAAAGTCAACGTTGAGGAAGTTCAACAAA
CCATGGAGAACTATCAATCAAATTATCAAGACTGGAAAAAATTCGCTAAT
TTTGATCCTCACAGGTACACGAGGAATCTAGTGGACACTGGCAACGGGAA
ATTCAATCTTATTCTGTTGTGCTGGGGTGAAGGTCAAGGAAGCGGTATAC
ACGACCACGCGGACTCACATTGCTGGATGAAAGTCATGGAAGGTTCACTT
GCAGAAAAATTGTACGACTGgccttgcgaaaacgaaagtggtgatgacgt
catctgtgatcaaaacaaactttcgCCACGTCAAATTACTGAATTCGATA
AAAATCAAGTCACGTATATAAACGACACAATCGGTCTCCATCGGGTAGAG
AACAACAGTCACNAATAAATGTCTTGCCatcaacaaaaaatgtctttacA
AATGCTTGTGGAAAAACTTCACGTACTTTTCGCGGAAGATAAAGTCAACG
TTGAGGAAGTTCAACAAACCATGGAGAACTATCAATCAAATTATCAAGAC
TGGAAAAAATTCGCTAATTTTGATCCTCACAGGTACACGAGGAATCTAGT
GGACACTGGCAACGGGAAATTCAATCTTATTCTGTTGTGCTGGGGTGAAG
GTCAAGGAAGCGGTATACACGACCACGCGGACTCACATTGCTGGATGAAA
GTCATGGAAGGTTCACTTGCAGAAAAATTGTACGACTGgccttgcgaaaa
cgaaagtggtgatgacgtcatctgtgatcaaaacaaactttcgCCACGTC
AAATTACTGAATTCGATAAAAATCAAGTCACGTATATAAACGACACAATC
GGTCTCCATCGGGTAGAGAACAACAGTCACNAATAAATGTCTTGCCatca
acaaaaaatgtctttacAAATGCTTGTGGAAAAACTTCACGTACTTTTCG
CGGAAGATAAAGTCAACGTTGAGGAAGTTCAACAAACCATGGAGAACTAT
CAATCAAATTATCAAGACTGGAAAAAATTCGCTAATTTTGATCCTCACAG
GTACACGAGGAATCTAGTGGACACTGGCAACGGGAAATTCAATCTTATTC
TGTTGTGCTGGGGTGAAGGTCAAGGAAGCGGTATACACGACCACGCGGAC
TCACATTGCTGGATGAAAGTCATGGAAGGTTCACTTGCAGAAAAATTGTA
CGACTGgccttgcgaaaacgaaagtggtgatgacgtcatctgtgatcaaa
acaaactttcgCCACGTCAAATTACTGAATTCGATAAAAATCAAGTCACG
TATATAAACGACACAATCGGTCTCCATCGGGTAGAGAACAACAGTCACNA
ATAAATGTCTTGCCatcaacaaaaaatgtctttacAAATGCTTGTGGAAA
AACTTCACGTACTTTTCGCGGAAGATAAAGTCAACGTTGAGGAAGTTCAA
CAAACCATGGAGAACTATCAATCAAATTATCAAGACTGGAAAAAATTCGC
TAATTTTGATCCTCACAGGTACACGAGGAATCTAGTGGACACTGGCAACG
GGAAATTCAATCTTATTCTGTTGTGCTGGGGTGAAGGTCAAGGAAGCGGT
ATACACGACCACGCGGACTCACATTGCTGGATGAAAGTCATGGAAGGTTC
ACTTGCAGAAAAATTGTACGACTGgccttgcgaaaacgaaagtggtgatg
acgtcatctgtgatcaaaacaaactttcgCCACGTCAAATTACTGAATTC
GATAAAAATCAAGTCACGTATATAAACGACACAATCGGTCTCCATCGGGT
AGAGAACAACAGTCACNAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004283XLOC_004283Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007589-exon-sc0000078-1491911889:368223..368324TCONS_00007589-exon-sc0000078-1491911889:368223..368324Clytia hemisphaericaexon
TCONS_00007589-exon-sc0000078-1510915933:368223..368324TCONS_00007589-exon-sc0000078-1510915933:368223..368324Clytia hemisphaericaexon
TCONS_00007589-exon-sc0000078-1575043694:368223..368324TCONS_00007589-exon-sc0000078-1575043694:368223..368324Clytia hemisphaericaexon
TCONS_00007589-exon-sc0000078-1491911889:383099..383331TCONS_00007589-exon-sc0000078-1491911889:383099..383331Clytia hemisphaericaexon
TCONS_00007589-exon-sc0000078-1510915933:383099..383331TCONS_00007589-exon-sc0000078-1510915933:383099..383331Clytia hemisphaericaexon
TCONS_00007589-exon-sc0000078-1575043694:383099..383331TCONS_00007589-exon-sc0000078-1575043694:383099..383331Clytia hemisphaericaexon
TCONS_00007589-exon-sc0000078-1491911889:384703..384780TCONS_00007589-exon-sc0000078-1491911889:384703..384780Clytia hemisphaericaexon
TCONS_00007589-exon-sc0000078-1510915933:384703..384780TCONS_00007589-exon-sc0000078-1510915933:384703..384780Clytia hemisphaericaexon
TCONS_00007589-exon-sc0000078-1575043694:384703..384780TCONS_00007589-exon-sc0000078-1575043694:384703..384780Clytia hemisphaericaexon
TCONS_00007589-exon-sc0000078-1491911889:386338..386519TCONS_00007589-exon-sc0000078-1491911889:386338..386519Clytia hemisphaericaexon
TCONS_00007589-exon-sc0000078-1510915933:386338..386519TCONS_00007589-exon-sc0000078-1510915933:386338..386519Clytia hemisphaericaexon
TCONS_00007589-exon-sc0000078-1575043694:386338..386519TCONS_00007589-exon-sc0000078-1575043694:386338..386519Clytia hemisphaericaexon
TCONS_00007589-exon-sc0000078-1491911889:387849..387985TCONS_00007589-exon-sc0000078-1491911889:387849..387985Clytia hemisphaericaexon
TCONS_00007589-exon-sc0000078-1510915933:387849..387985TCONS_00007589-exon-sc0000078-1510915933:387849..387985Clytia hemisphaericaexon
TCONS_00007589-exon-sc0000078-1575043694:387849..387985TCONS_00007589-exon-sc0000078-1575043694:387849..387985Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007589-proteinTCONS_00007589-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:368223..387985 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
72.5835	68.6636	32.0893	27.3521	35.5855	25.6623	44.6529	50.7847	50.0751	43.2288	32.3012	31.4253	35.2348	34.2491	40.9842	18.6016	44.4562	36.8497	52.6404	52.9716	34.4696	32.3751	76.745	85.2785	110.922	106.211	63.7155	53.7043	28.8367	32.9759
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014710RmlC-like_jellyroll
IPR010300CDO_1
IPR011051RmlC_Cupin
Vocabulary: Molecular Function
TermDefinition
GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0005506iron ion binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Blast
[Close]
BLAST of TCONS_00007589 vs. Swiss-Prot (Human)
Match: CDO1 (Cysteine dioxygenase type 1 OS=Homo sapiens GN=CDO1 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 6.039e-49
Identity = 80/146 (54.79%), Postives = 106/146 (72.60%), Query Frame = 1 
Query:  196 SLQMLVEKLHVLFAEDKVNVEEVQQTMENYQSNYQDWKKFANFDPHRYTRNLVDTGNGKFNLILLCWGEGQGSGIHDHADSHCWMKVMEGSLAEKLYDWPCENESGDDVICDQNKLSPRQITEFDKNQVTYINDTIGLHRVENNSH 633
            +L  L+  LH LFA D+VNVEEVQ  ME Y+S+  +W  +A FD +RYTRNLVD GNGKFNL++LCWGEG GS IHDH +SHC++K+++G+L E L+ WP  ++  ++++    K S R + E   NQ  YIND+IGLHRVEN SH
Sbjct:   11 TLADLIRILHQLFAGDEVNVEEVQAIMEAYESDPTEWAMYAKFDQYRYTRNLVDQGNGKFNLMILCWGEGHGSSIHDHTNSHCFLKMLQGNLKETLFAWP--DKKSNEMV----KKSERVLRE---NQCAYINDSIGLHRVENISH 147
The following BLAST results are available for this feature:
BLAST of TCONS_00007589 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDO16.039e-4954.79Cysteine dioxygenase type 1 OS=Homo sapiens GN=CDO... [more]
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