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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007583 ID=TCONS_00007583|Name=TCONS_00007583|organism=Clytia hemisphaerica|type=transcript|length=1559bp
acttgttgatgttgtcaaagagattcaaCATTGTTGACTTAATAATGGCA
AACACAGTTGAAAATTTAattacaaagataaaaagtttaCCTGTAAAAAC
TCAGCGGGGTATTTCAGCCATCATAGGCGCAACAGTTGCAGATGCAGCCA
CAAGACCATTACATTGGGTTTACAAACAACCAACCTTAGACGCCACCATC
AGTGAGTCAACCACACCTGAATTTTGGCCCGAAAGCAAAAGCCCTTTCTA
CACTTTGCCACTAGGTGCAACAAGCAATTATAATGATGTTGCTGTTTCCT
CTCTAACCTCCCTATATGAGAATGGTGGTGAGCTGAATATGAAACATCTT
TGTGAGACCTTCAAGAAGGATTTTGGACCGGGAACCATTTATGAAGAAGC
ATTAACACGTAGACCTACTGATCGATCAAAGTTACCGATGGAAGGGCATT
GGCTGCATAAAGGAGTCATTTTGTTTCTCGAGAATTATGCAACAAGAGGA
GAAATTAAGAATCTGGGTGACTCTACTCATAATGAATCTGATGGGTTTTG
TGCAGCTCTTCCAATCATCGTCAAACATGCTGGCAGTGATGATATGTGGG
AACAGGCTTCAAAAGCAGCAATGTTGTTGAATACCAACCCTAAGATTCTC
AATATGTTTGAGGCAGGAGCTCTTCTGATCAGCAACCATATTTTAGGTGA
AGAAGAAGCATTTAGTAAGGTCACAAATGTTGTCAAAGACAAATTACCTG
ATGTTTATGAGTTAATGGTTGAAGTAGAGGAAGCTAAATCCATGCCGTTT
ATTACAACAGTTGCTCAATTTGGAAAGGCTTGTTATCTACCAGGGTCTTT
TCAAGGTGCGCTATTAGCAATGCAGCAAACATCATCCTTTGTTGATGCAG
TTCGATTGAATATACGTGCCGGTGGTTGTAACTGTAGCCGATCAAATCTC
ATTGGTGCTTGCTATGGTGCTAAATATGGTATTGATGGCATACCAATTGA
TTGgttaaagaaagttaaaaatattgaGAATACCATGGAGAAAGCTATAC
AACTTTTGAATGCttaaaaaattatattgcaCCAGCTAGAAACATACCCT
AGTAGTAGTAATAAATTAATGAAAGTCATAAAATAGCCCattattcattt
tctttttctctgtATAACTCAGTTATTTATTTTCAGCGTGATTTTTTAGT
CTTTTAGTCCtttcagattttttcttttctacgtaTTTATATTCCCACGT
ACATCACTAAATATTTCCTGTACTTATTTATTTAATGTATTATTGTGTAA
CTTTTTTTGACTAGTTTGTGTGGCCTGATTTGTCTGTGGTTTATCAATCA
TAATACCCTATTCAATTTATGATATACCTGTACCGTATTGTACTGTATAG
CAAAGGTTTGATACttaaaagcaaaataaataatcaatttcttcaaacaa
aacattttaaCTTGCAAATGCTTTAATTAATCGAAATCAAAGATTGCTTT
TAGGATTAATAACCAGTacgtaatttctttcttttgtatttGATTCAAAA
TTTCTAGAA Run BLAST on NCBI protein sequence of TCONS_00007583-protein >TCONS_00007583-protein ID=TCONS_00007583-protein|Name=TCONS_00007583-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
LLMLSKRFNIVDLIMANTVENLITKIKSLPVKTQRGISAIIGATVADAAT
RPLHWVYKQPTLDATISESTTPEFWPESKSPFYTLPLGATSNYNDVAVSS
LTSLYENGGELNMKHLCETFKKDFGPGTIYEEALTRRPTDRSKLPMEGHW
LHKGVILFLENYATRGEIKNLGDSTHNESDGFCAALPIIVKHAGSDDMWE
QASKAAMLLNTNPKILNMFEAGALLISNHILGEEEAFSKVTNVVKDKLPD
VYELMVEVEEAKSMPFITTVAQFGKACYLPGSFQGALLAMQQTSSFVDAV
RLNIRAGGCNCSRSNLIGACYGAKYGIDGIPIDWLKKVKNIENTMEKAIQ
LLNA Run BLAST on NCBI transcript from alignment at sc0000078:335812..341615+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007583 ID=TCONS_00007583|Name=TCONS_00007583|organism=Clytia hemisphaerica|type=transcript|length=5804bp|location=Sequence derived from alignment at sc0000078:335812..341615+ (Clytia hemisphaerica)
acttgttgatgttgtcaaagagattcaaCAGTAGGTTAACAGTTCAGAAA
TTAATAATTCCATGTTCCGTTCACTTGttccaagttagagccgttACTTT
GGCCATTTTAcatccattttattttaagaaataaatccCACCCCAAAATA
GCCATTCTACAtgcattgcaaaaaaacatgcagacgttttcttttttaat
ggcTCAATTTTTCTGTTTGCTTTTTTGCAAAAACCCCATATTGTgctaaa
atcttgaaaaaaggcTTAAAACCCACACTTTAAATCCTGTAAAATCTGGG
TATAGGAGTTTTAGTCTAAtccaacaaagcatcttataattatcatcatc
attttcaagGTACCCAGTGGCGTAGCCAGGATTTTCAAGGGGTgtcgcaa
atttcaattttcaaatgggcGGTTAGAGGGCGGTTGTTAATTTCATCAGG
GCGGTGTTAAAATATAACGCCCaaatacttccaaacaaccgggGGACGTT
ATGGGCTGCAGATCCCAATACCTGTGAACCCCAAACACAGGCCACGTTGC
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NNNNNNNNNNNNNTCCTCTTACCAGcgctttttatttcttgtctttcaaa
aacttttgtttgtcaaaaaaggGTGTCGCTGAGTCTTCAGGAGCGACACC
CTAGTGACGCCACTGGTACCTCTGGATATGGAGAACAAAAAAATTAGGAA
TAAGTTTATTTGACCCCTGAAACCCAATATAATAAAACAAGCAAAAtcca
aattaaaaatttttttcaactaaacaaaaattttttttttggacctacct
ccgggtgccccgctggaggtcctatgaattaacctctgtctgttcgttcg
ttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgtt
cgttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNggaaatatgccggaaaaactgtttt
tttggcattttctcgagattttatcattagttttttctgattttttgctc
aaagatgcgtgttaacaatgcccaaatcatggccgagtccgatttttcag
aaaatgttttttccagccaaaaaagccggaaatttccgtttttgcagatt
tgcaGATTTTTTCGTTTCATGTCTTTGTTTTTTTCAAACAaaaacatcat
ttataagaatgtccacgattaagcatggttcaattttcaatgaaactgat
tttggtacaggaactttctaaaaatcgccagaacagccgagaattgctgg
attccatgaatttctcgagttgttctcgtattattctgcattttcatact
attgttctcatttttcaattgtcttattacatcaatcttcaggtaggtcc
attcagcatgtagcttgttttacAGTTGTTGACTTAATAATGGCAAACAC
AGTTGAAAATTTAattacaaagataaaaagtttaCCTGTAAAAACTCAGC
GGGGTATTTCAGCCATCATAGGCGCAACAGTTGCAGATGCAGCCACAAGA
CCATTACATTGGGTTTACAAACAACCAACCTTAGACGCCACCATCAGTGA
GTCAACCACACCTGAATTTTGGCCCGAAAGCAAAAGCCCTTTCTACACTT
TGCCACTAGGTGCAACAAGCAATTATAATGATGTTGCTGTTTCCTCTCTA
ACCTCCCTATATGAGAATGGTGGTGAGCTGAATATGAAACATCTTTGTGA
GACCTTCAAGAAGGATTTTGGACCGGGAACCATTTATGAAGAAGCATTAA
CACGTAGACCTACTGATCGATCAAAGTTACCGATGGAAGGGCATTGGCTG
CATAAAGGAGTCATTTTGTTTCTCGAGAATTATGCAACAAGAGGAGAAAT
TAAGAATCTGGGTGACTCTACTCATAATGAATCTGATGGGTTTTGTGCAG
CTCTTCCAATCATCGTCAAACATGCTGGCAGTGATGATATGTGGGAACAG
GCTTCAAAAGCAGCAATGTTGTTGAATACCAACCCTAAGATTCTCAATAT
GTTTGAGGCAGGAGCTCTTCTGATCAGCAACCATATTTTAGGTGAAGAAG
AAGCATTTAGTAAGGTCACAAATGTTGTCAAAGACAAATTACCTGATGTT
TATGAGTTAATGGTTGAAGTAGAGGAAGCTAAATCCATGCCGTTTATTAC
AACAGTTGCTCAATTTGGAAAGGCTTGTTATCTACCAGGGTCTTTTCAAG
GTGCGCTATTAGCAATGCAGCAAACATCATCCTTTGTTGATGCAGTTCGA
TTGAATATACGTGCCGGTGGTTGTAACTGTAGCCGATCAAATCTCATTGG
TGCTTGCTATGGTGCTAAATATGGTATTGATGGCATACCAATTGATTGgt
taaagaaagttaaaaatattgaGAATACCATGGAGAAAGCTATACAACTT
TTGAATGCttaaaaaattatattgcaCCAGCTAGAAACATACCCTAGTAG
TAGTAATAAATTAATGAAAGTCATAAAATAGCCCattattcattttcttt
ttctctgtATAACTCAGTTATTTATTTTCAGCGTGATTTTTTAGTCTTTT
AGTCCtttcagattttttcttttctacgtaTTTATATTCCCACGTACATC
ACTAAATATTTCCTGTACTTATTTATTTAATGTATTATTGTGTAACTTTT
TTTGACTAGTTTGTGTGGCCTGATTTGTCTGTGGTTTATCAATCATAATA
CCCTATTCAATTTATGATATACCTGTACCGTATTGTACTGTATAGCAAAG
GTTTGATACttaaaagcaaaataaataatcaatttcttcaaacaaaacat
tttaaCTTGCAAATGCTTTAATTAATCGAAATCAAAGATTGCTTTTAGGA
TTAATAACCAGTacgtaatttctttcttttgtatttGATTCAAAATTTCT
AGAA Coding sequence (CDS) from alignment at sc0000078:335812..341615+ >TCONS_00007583 ID=TCONS_00007583|Name=TCONS_00007583|organism=Clytia hemisphaerica|type=CDS|length=2130bp|location=Sequence derived from alignment at sc0000078:335812..341615+ (Clytia hemisphaerica)
ttgttgatgttgtcaaagagattcaaCATTGTTGACTTAATAATGGCAAA
CACAGTTGAAAATTTAattacaaagataaaaagtttaCCTGTAAAAACTC
AGCGGGGTATTTCAGCCATCATAGGCGCAACAGTTGCAGATGCAGCCACA
AGACCATTACATTGGGTTTACAAACAACCAACCTTAGACGCCACCATCAG
TGAGTCAACCACACCTGAATTTTGGCCCGAAAGCAAAAGCCCTTTCTACA
CTTTGCCACTAGGTGCAACAAGCAATTATAATGATGTTGCTGTTTCCTCT
CTAACCTCCCTATATGAGAATGGTGGTGAGCTGAATATGAAACATCTTTG
TGAGACCTTCAAGAAGGATTTTGGACCGGGAACCATTTATGAAGAAGCAT
TAACACGTAGACCTACTGATCGATCAAAGTTACCGATGGAAGGGCATTGG
CTGCATAAAGGAGTCATTTTGTTTCTCGAGAATTATGCAACAAGAGGAGA
AATTAAGAATCTGGGTGACTCTACTCATAATGAATCTGATGGGTTTTGTG
CAGCTCTTCCAATCATCGTCAAACATGCTGGCAGTGATGATATGTGGGAA
CAGGCTTCAAAAGCAGCAATGTTGTTGAATACCAACCCTAAGATTCTCAA
TATGTTTGAGGCAGGAGCTCTTCTGATCAGCAACCATATTTTAGGTGAAG
AAGAAGCATTTAGTAAGGTCACAAATGTTGTCAAAGACAAATTACCTGAT
GTTTATGAGTTAATGGTTGAAGTAGAGGAAGCTAAATCCATGCCGTTTAT
TACAACAGTTGCTCAATTTGGAAAGGCTTGTTATCTACCAGGGTCTTTTC
AAGGTGCGCTATTAGCAATGCAGCAAACATCATCCTTTGTTGATGCAGTT
CGATTGAATATACGTGCCGGTGGTTGTAACTGTAGCCGATCAAATCTCAT
TGGTGCTTGCTATGGTGCTAAATATGGTATTGATGGCATACCAATTGATT
GgttaaagaaagttaaaaatattgaGAATACCATGGAGAAAGCTATACAA
CTTTTGAATGCttaattgttgatgttgtcaaagagattcaaCATTGTTGA
CTTAATAATGGCAAACACAGTTGAAAATTTAattacaaagataaaaagtt
taCCTGTAAAAACTCAGCGGGGTATTTCAGCCATCATAGGCGCAACAGTT
GCAGATGCAGCCACAAGACCATTACATTGGGTTTACAAACAACCAACCTT
AGACGCCACCATCAGTGAGTCAACCACACCTGAATTTTGGCCCGAAAGCA
AAAGCCCTTTCTACACTTTGCCACTAGGTGCAACAAGCAATTATAATGAT
GTTGCTGTTTCCTCTCTAACCTCCCTATATGAGAATGGTGGTGAGCTGAA
TATGAAACATCTTTGTGAGACCTTCAAGAAGGATTTTGGACCGGGAACCA
TTTATGAAGAAGCATTAACACGTAGACCTACTGATCGATCAAAGTTACCG
ATGGAAGGGCATTGGCTGCATAAAGGAGTCATTTTGTTTCTCGAGAATTA
TGCAACAAGAGGAGAAATTAAGAATCTGGGTGACTCTACTCATAATGAAT
CTGATGGGTTTTGTGCAGCTCTTCCAATCATCGTCAAACATGCTGGCAGT
GATGATATGTGGGAACAGGCTTCAAAAGCAGCAATGTTGTTGAATACCAA
CCCTAAGATTCTCAATATGTTTGAGGCAGGAGCTCTTCTGATCAGCAACC
ATATTTTAGGTGAAGAAGAAGCATTTAGTAAGGTCACAAATGTTGTCAAA
GACAAATTACCTGATGTTTATGAGTTAATGGTTGAAGTAGAGGAAGCTAA
ATCCATGCCGTTTATTACAACAGTTGCTCAATTTGGAAAGGCTTGTTATC
TACCAGGGTCTTTTCAAGGTGCGCTATTAGCAATGCAGCAAACATCATCC
TTTGTTGATGCAGTTCGATTGAATATACGTGCCGGTGGTTGTAACTGTAG
CCGATCAAATCTCATTGGTGCTTGCTATGGTGCTAAATATGGTATTGATG
GCATACCAATTGATTGgttaaagaaagttaaaaatattgaGAATACCATG
GAGAAAGCTATACAACTTTTGAATGCttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007583-exon-sc0000078-1491911889:335812..335841 | TCONS_00007583-exon-sc0000078-1491911889:335812..335841 | Clytia hemisphaerica | exon |
| TCONS_00007583-exon-sc0000078-1510915933:335812..335841 | TCONS_00007583-exon-sc0000078-1510915933:335812..335841 | Clytia hemisphaerica | exon |
| TCONS_00007583-exon-sc0000078-1575043694:335812..335841 | TCONS_00007583-exon-sc0000078-1575043694:335812..335841 | Clytia hemisphaerica | exon |
| TCONS_00007583-exon-sc0000078-1491911889:340087..341615 | TCONS_00007583-exon-sc0000078-1491911889:340087..341615 | Clytia hemisphaerica | exon |
| TCONS_00007583-exon-sc0000078-1510915933:340087..341615 | TCONS_00007583-exon-sc0000078-1510915933:340087..341615 | Clytia hemisphaerica | exon |
| TCONS_00007583-exon-sc0000078-1575043694:340087..341615 | TCONS_00007583-exon-sc0000078-1575043694:340087..341615 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000078 | supercontig | sc0000078:335812..341615 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR005502 | Ribosyl_crysJ1 |
Blast
The following BLAST results are available for this feature:
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