TCONS_00007570 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00007570
Unique Name	TCONS_00007570
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3699

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000078:247391..253574+

transcript sequence

>TCONS_00007570 ID=TCONS_00007570|Name=TCONS_00007570|organism=Clytia hemisphaerica|type=transcript|length=3699bp
tttagaaaaaaatactttgactAGACATCAGTCATGAAGAAAAAGGGTCG
AATAATTCCCCTCtttcttttcattgaaatattgTCCATAGTCAGCGCTT
ATGAAGTGTTACCTGGGTTAGATGTTTTGAGTGCAGGATTCGATGCCGCT
TCTTGGAGCAGCAAGTCTCGTATATTTGATTTGGCAAATCAAGAACAGTC
ACAAAAAGTTTACGTTCAATCTATTGATAAGACGTACGTGGCGCCCGACT
TCGTGACGGTGGTGACGCACGGCGCACAATCAAAACGCGTGGAAGAATCC
TGTGTCGGAGTTTACACTCATTTTAGTGAGTACATTCATACGTATCAATC
CTCAGTCGGTTTCGACGTTGGTATACACACTGGCAACTTCAGTCTGGGAA
TCTCCGCTCATAAAGACGTTCACAAAATCTACGAGTCGATCACTAAAGAA
GGACAGGCTATCGGATCATCTGAATCATGGTGGGGTGTTTTCGAAGCCAC
CCTTCCTCCACCCTTCTTAATGGGCGAAAAAATGTCTCCCATGTTTCAAC
AAACTATGGCGTATTTGAACAAAATGGGCACACCTCAGACAGAAGCGCAG
CAAACTATTTACAACCAAGTGTTAGGGAGCTTTGGAACACACTACGTCAC
ATCGGTAATAACCGGAGGGCGCGCCAAAATGACCAATTTTGTTAACAGCA
GTTATCACAAGGAACATTCTGAAACAACTGTATCGACTCAAgtttccatt
ggatttgaaTGGAAGAAATTTGCTTTATCATTGTCAGATAAAgcgaaaga
ttttgaaaagaaacTGACTGAGGATTTCAGGAACAACTCCAACCAAGTCT
TAACTTTCCAACCTGATGTCAAAGAAATACATCAATCAAAAGCACCTTGG
TTAAAATGGGAACAGGTTGTGGCACAAGAACCTACTGTGGTCAACACATC
AGCAAGTAGTCTGGCAAACCTGttctttcaaaatgttgaaGTAATGAATC
ACANTGTGGTCAACACATCAGCAAGTAGTCTGGCAAACCTGttctttcaa
aatgttgaaGTAATGAATCACATGCAACAGACCATCGATTATTACACACA
GCACCAACACTTACCGAAACTGTCAGATATAAAGCCATTGAAATTGAACC
CACTTCTTCCAATAGAATCAAACAAAATCGAGTTTAGACCAGATGAAGAT
ACTCAGAAGAGCAGTCCTGCTCCAGGATTGAAGATTGTTGGGTGTGGTTT
TGATGCAACTACACTGCTTTCCAAAACCTGCTTGTTTGAATCACAATCCC
CAGATCTACCTTCGACCAAATGGCAGGATCCGTATTATCCTAATATAATA
TACGATGTCCCTTTTGgttattttgcaaCAAATACACCAGAATCCCTCCT
GGTTGATGCCACAGTGGTGATGCAATCGATTGATGATTATGTTGAAAAAT
CGGTTTACTACGAATCACACCACCACAGTGGATTTTTAGGCTTTGGCTCG
AAAACAGAGACTAAAACAACTAAGAAATATTATCAAAACTTCTATGCACA
TAACTATAAACTCGTTTTATCCCTCCGACAAATCGCATGGTACACTTTGA
GACTATCTGAGTTCCCCTTACCTAAGTTCAGTAGAACCTTTCAACAATCA
CTGGATTACTTACCAAAAACCTTCAATGCTTCAGATGCACATGGGATGAC
catctttaaaatgttctttgatGCTTTTGGCACAGATGTTGTCACATCAG
CTGACATGGGAGgcatggtatgggctgaaaACTGGTTTGAATCGTGTCTA
AGCAAGATATACTCGGATATTTGCATCACACACACTGTAAATCGTGGCTG
GTGGTTCGTCCACCATCATGATATCACGAAAAAGTGTGATAAACGTATCA
TCAATGATCTAAAGAAGTATTCAGAAGCTCATTACGAAATGCTGGGTGGA
ACTTCtggtcaaatcaaacaaaaagatTGGGATGAATGGGTTTCCAGCGT
TAAATATGATCCAAGACCGGTCAAATATAGCTTAGCTCCAATCCATTATT
TGTTGGCCGATTCTCATCCGAAGAAGAAGTCTTTGGAGGCAGCTACGCTA
CATTTCTTGAAAACAAGTCATGAGGAGCAACAGAAGTTGATTGTAGAGTT
GAAAAAAGTTAGACCACCACCTGCTAGTATCTGTAAAAAGATTCATCCGC
CCAAACTGAACGAGattCTTCAAGAAGACTACACCAAACCTTTATTAGAT
GCAGACCCCAGCGATGTATTGTGTCCGTTTGTTGGTTACCATGGTGCTTA
TTGTCCAAAAGCATTGTCCAAAAGTAATTTGAAATTCATCTCTGATAAAG
TCAAAGGTCAAAGCTCACTTCCACGCGGCGTTGGTCTCACGATCGATGTT
ACGACCGGTGAATTGAAACTTCCTGCACTGAACTACATTGATTCAAAGGA
TGAAACATGGTCTGATCCACAGACTGGTGATATCTTTAAAATCCCAGTCG
GGGTGTCATTGACTATCAATGGAACTGAATCCGAAAATAAACCGATAATC
CGAGTTTTCAAATCGGAACAAGAATTGACTTCCGTTTGGGAATCTGGATA
CAAATCAGGCACGTGGTTAGGTGGAGAATTCGGTCAAAGTAAAGGTGTCT
TGGATTTGTACACTAAATTCTTTTCCAAGCAACAAGCTACTTCGATCAAT
CAACACCCACAGAGTTTATACAAGTTATCCTTGGCAGGCGAATGGGAGAA
AAATTTGAACGATTACGTGAAATATGCGTTGAAAGCTTTGCCAGAGAAGT
ATGACGAGAATATTTACGATCGATTCATGGATACGTGGGGTACACACGTG
GCTGAGAAAACATTGGTCGGAGGTATGTCTGAGCAGCAAGTAATTATGAA
GGACTGTATGTGGCAGAACAAGTATTTAACAGGAGGAATAACCGATCCTC
AGCTTCGACAATTCTTGGAAATGGAGTTGGGAATGAAGACACCGCCCAGT
GGATATTACAAAGAACGAAGACAAATGCATATCGATCATAGAATTGGAGG
GAATCCGGAAGTTAAGGATAAAGCAACTTGGATTAAGACTTTGGGCAAAA
ATCCAGCACTGGTGAAAATATANATTCTGATTTTACCACAGGGAATCCGG
AAGTTAAGGATAAAGCAACTTGGATTAAGACTTTGGGCAAAAATCCAGCA
CTGGTGAAAATATATGCTCAAGTAGAATGGTCAATAGTCGCTGAAAAATC
TGGTGTGGTCTCCAAAGCAATTGTCGCAAACTTAAAGAAAGCTGTGCAAA
ATCGAATGACATTGAGTGAAAATCGACGAGTTAAGGAAGCCACAGAAACA
GCAAAGAAGAGATTAGAATATCTCCAAGGACCTCGTTCTGTTGTTGCTAT
GGTAGCACATGGCCGTAGAGGAACCATTGCGCCACAACTTGAGACAGGTA
AATACTTGACCTTGAAAGGATTCAAAGAATGTCCGCCTGGTTTAAACATC
GCGCAATCAAAATCCACCTGTAATACCGGCCTGTATATCACATCTTGGAA
CCATTTCCGATTAACGGAACCACTCCGGTATGAACGAAACGAAAAGGGCG
AAATGCGGtctgtccggtgttttgatttgGATTCCCGACGTCAATGCATC
ACTCATTATGGACCCTGGGTAAGAAATGGTTGTTCACTGCAACCTTACG

Run BLAST on NCBI

transcript from alignment at sc0000078:247391..253574+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00007570 ID=TCONS_00007570|Name=TCONS_00007570|organism=Clytia hemisphaerica|type=transcript|length=6184bp|location=Sequence derived from alignment at sc0000078:247391..253574+ (Clytia hemisphaerica)
tttagaaaaaaatactttgactAGACATCAGTCATGAAGAAAAAGGGTCG
AATAATTCCCCTCtttcttttcattgaaatattgTCCATAGTCAGCGCTT
ATGAAGTGTTACCTGGGTTAGATGTTTTGAGTGCAGGATTCGATGCCGCT
TCTTGGAGCAGCAAGTCTCGTATATTTGATTTGGCAAATCAAGAACAGTC
ACAAAAAGTTTACGTTCAATCTATTGATAAGACGTACGTGGCGCCCGACT
TCGTGACGGTGGTGACGCACGGCGCACAATCAAAACGCGTGGAAGAATCC
TGTGTCGGAGTTTACACTCATTTTAGGTAGGTCAACTTTCTTTCTTGTgg
ttcaaaagaaaattgattacAATAAACGAATCTCATTCTTCAAACTTTGG
AGGACATTAAAGGCCGTCTCCACTTCTCCActcaatcgcactttttggct
tcaatcctttttgctttgaaaaaagattacgttatAAGAATGTTGCGCGC
GCTCGAATAAAAAGTTGAACacgtttcaacttttttcaaccgttacgtca
aatcgcgccaatggagttgcttcatttttcttttgacaaatagcgtggaa
gctttgctcgaaaaagtgcgattgaagcgcgcacaagtggagaccggcct
tacgGTCTCTTTGTTGAAATAAGCAAtcgtttgaaaatgattttttactt
tatttttatgCAGTGAGTACATTCATACGTATCAATCCTCAGTCGGTTTC
GACGTTGGTATACACACTGGCAACTTCAGTCTGGGAATCTCCGCTCATAA
AGACGTTCACAAAATCTACGAGTCGATCACTAAAGAAGGACAGGCTATCG
GATCATCTGAATCATGGTGGGGTGTTTTCGAAGCCACCCTTCCTCCACCC
TTCTTAATGGGCGAAAAAATGTCTCCCATGTTTCAACAAACTATGGCGTA
TTTGAACAAAATGGGCACACCTCAGACAGAAGCGCAGCAAACTATTTACA
ACCAAGTGTTAGGGAGCTTTGGAACACACTACGTCACATCGGTAATAACC
GGAGGGCGCGCCAAAATGACCAATTTTGTTAACAGCAGTTATCACAAGGA
ACATTCTGAAACAACTGTATCGACTCAAgtttccattggatttgaaTGGA
AGAAATTTGCTTTATCATTGTCAGATAAAgcgaaagattttgaaaagaaa
cTGACTGAGGATTTCAGGAACAACTCCAACCAAGTCTTAACTTTCCAACC
TGATGTCAAAGAAATACATCAATCAAAAGCACCTTGGTTAAAATGGGAAC
AGGTTGTGGCACAAGAACCTACTGTGGTCAACACATCAGCAAGTAGTCTG
GCAAACCTGttctttcaaaatgttgaaGTAATGAATCACANTGTGGTCAA
CACATCAGCAAGTAGTCTGGCAAACCTGttctttcaaaatgttgaaGTAA
TGAATCACATGCAACAGACCATCGATTATTACACACAGCACCAACACTTA
CCGAAACTGTCAGATATAAAGCCATTGAAATTGAACCCACTTCTTCCAAT
AGAATCAAACAAAATCGAGTTTAGACCAGATGAAGATACTCAGAAGAGCA
GTCCTGCTCCAGGATTGAAGATTGTTGGGTGTGGTTTTGATGCAACTACA
CTGCTTTCCAAAACCTGCTTGTTTGAATCACAATCCCCAGATCTACCTTC
GACCAAATGGCAGGATCCGTATTATCCTAATATAATATACGATGTCCCTT
TTGgttattttgcaaCAAATACACCAGAATCCCTCCTGGTTGATGCCACA
GTGGTGATGCAATCGATTGATGATTATGTTGAAAAATCGGTTTACTACGA
ATCACACCACCACAGTGGATTTTTAGGCTTTGGCTCGAAAACAGAGACTA
AAACAACTAAGAAATATTATCAAAACTTCTATGCACATAACTATAAACTC
GTTTTATCCCTCCGACAAATCGCATGGTACACTTTGAGACTATCTGAGTT
CCCCTTACCTAAGTTCAGTAGAACCTTTCAACAATCACTGGATTACTTAC
CAAAAACCTTCAATGCTTCAGATGCACATGGGATGACcatctttaaaatg
ttctttgatGCTTTTGGCACAGATGTTGTCACATCAGCTGACATGGGAGG
TAATTTATTCTaacattttctttctattttaaACGGTGAAATAAGAATAC
TGTTACAGACCCTCTTTTTATGCCCTTATCTTATNCATTGGTGAGCTTTC
CAGTTGATGTGATTTTTTCGATTGGAAGGATACGTTCGTTGTAGTAAAGA
ATTCCATTTTTCTCAGATGAAATGTTTGCCAATCTCTTTGATGGTGTAAA
TTTCTTCACTTCATGGGTTGCTTTCATAAAGAAATATTCCTGTGCCAACG
CGTTGTTATCCTTTGAAGATGGTTGTGGTAGACACGACTTGAGTTTGAGG
AATTTGATCACAAGAGCAAGAGTTGAGGTGGCTTTCTTCCAACCATATTT
GTTAGGATCAATGATGTATNCTTGAATCGGCGCACAGGGATGACATAATC
CGGTCCTTGAGAGGGCTTTAATACTTACAATCGAGGAGTTCTAAAGTTTA
CCTTTATCATTTCTTCGTGTaggcatggtatgggctgaaaACTGGTTTGA
ATCGTGTCTAAGCAAGATATACTCGGATATTTGCATCACACACACTGTAA
ATCGTGGCTGGTGGTTCGTCCACCATCATGATATCACGAAAAAGTGTGAT
AAACGTATCATCAATGATCTAAAGAAGTATTCAGAAGCTCATTACGAAAT
GCTGGGTGGAACTTCtggtcaaatcaaacaaaaagatTGGGATGAATGGG
TTTCCAGCGTTAAATATGATCCAAGACCGGTCAAATATAGCTTAGCTCCA
ATCCATTATTTGTTGGCCGATTCTCATCCGAAGAAGAAGTCTTTGGAGGC
AGCTACGCTACATTTCTTGAAAACAAGTCATGAGGAGCAACAGAAGTTGA
TTGTAGAGTTGAAAAAAGTTAGACCACCACCTGCTAGTATCTGTAAAAAG
ATTCATCCGCCCAAACTGAACGAGgttagtttgtttacattcatcAGGCC
GTTTCACGGTCGGAATGAACCATAGATAATCAGGACTGTAAAGTAAatag
taagtatattcatctggtggctgtcggctatccccttttctatttgcgct
agacctgggagatcgaatgctgaggtggagcgccacacctactctcagct
ctcagtaacttaccgcctagatcagattacccaatctaagctactcatct
gctgagttggcggtgaccggggatcgaacccacaacccttagattaTAAG
GCAAATGccctaccgactgagctacccggacacaaatcaggactgattgc
caACAACAAACTTCCGGTTGGTTAaacacaaaaatgacaaaagtcGTTAT
GAGAGCgcggtggtcctgattacccatgattacTTTCGACCGTGAAATTG
CCTATTATAGTCAGTGTCGGACGTTTGATGAAAAGCATCACATATCATTA
CGctataaatttttttctattgatACTTTTCTGGCGAAAAGATTAGTTAA
CATGATAAGAAACACGACATTAACTTTTTAAGATCACGCAATCTTTTAAG
CCAGTGAGCTAAAACATTAACGAGTTTATGTAACGGAGAcagtaaggttc
taatttgactagatcctgaccagctgaggacgaaggtaaatcagcacttt
taccgtccacGATTTTGTGGGTCAGAAGTGCGGGTTTTTTTCcgaatcgc
ttcagtcactctatcGTCCTCAAAagagcaaatacataaactcgctatta
tgaATTCACATCCAAATGGAAACACCGATGATATTATTCTTTTTGTTTGT
TCTGCTTTGTCATTAAAAGATGCGTGGTTGATTtaaatataatcaaaaat
gtttttagattCTTCAAGAAGACTACACCAAACCTTTATTAGATGCAGAC
CCCAGCGATGTATTGTGTCCGTTTGTTGGTTACCATGGTGCTTATTGTCC
AAAAGCATTGTCCAAAAGTAATTTGAAATTCATCTCTGATAAAGTCAAAG
GTCAAAGCTCACTTCCACGCGGCGTTGGTCTCACGATCGATGTTACGACC
GGTGAATTGAAACTTCCTGCACTGAACTACATTGATTCAAAGGATGAAAC
ATGGTCTGATCCACAGACTGGTGATATCTTTAAAATCCCAGTCGGGGTGT
CATTGACTATCAATGGAACTGAATCCGAAAATAAACCGATAATCCGAGTT
TTCAAATCGGAACAAGAATTGACTTCCGTTTGGGAATCTGGATACAAATC
AGGCACGTGGTTAGGTGGAGAATTCGGTCAAAGTAAAGGTGTCTTGGATT
TGTACACTAAATTCTTTTCCAAGCAACAAGCTACTTCGATCAATCAACAC
CCACAGAGTTTATACAAGTTATCCTTGGCAGGCGAATGGGAGAAAAATTT
GAACGATTACGTGAAATATGCGTTGAAAGCTTTGCCAGAGAAGTATGACG
AGAATATTTACGATCGATTCATGGATACGTGGGGTACACACGTGGCTGAG
AAAACATTGGTCGGAGGTTAGTTTTATATTATTAGTTGCCGAAAACCTAG
ATTAAAAGTTTTACTgtgagaaaaaataatataatttggATAGTCGTCTT
GTGGATgttcaaaagaaaataacagACACCTTTTCTCATAGGTTTCGGAC
ACTGAATCCTTTAATACCTACGAGGAGCACTCTACTAACTTACTTAATCT
AGCCAAGATAACAATTCTATTTCATTTTCTCTCAAAGGTATGTCTGAGCA
GCAAGTAATTATGAAGGACTGTATGTGGCAGAACAAGTATTTAACAGGAG
GAATAACCGATCCTCAGCTTCGACAATTCTTGGAAATGGAGTTGGGAATG
AAGACACCGCCCAGTGGATATTACAAAGAACGAAGACAAATGCATATCGA
TCATAGAATTGGAGGTAAACGCTTATTGTACAAGCATTTTTTTACTTGTA
AAGTTTTAACAAATCTTTAGACATCTTGATGATAGCACAGATGACAAATG
TGTTGAAGACAGTGGGGTCAGCACTAAAATCCTGGACATACTAAAAGGAA
TTTCGAGAATTTCTTGCATACCACCACCCCATTTTGgagaagtggtattt
tagtacctATGTACTAAAAGTTAGAGGGAAATTTTGACACATAGACCACc
caatttttgtattttcaggACAAATTTTGTCTTGTCGGAACCATTTTTCT
CAAGAGTGGTGAAATTGCAACAGAAtgttcatttttctcaaaaattgata
cttttaaaCAATGAAGCTTTATAAATTGAGCAAACATTAAAGACATTTGA
CTTGACCatacaaatttaaattttttgaaaaattgcaaaaattctgaata
aaaaatcataaaattatgaaaattactAATTTTAGTATCAGGAAAATTGG
CCGTATTAATACCGTCATTCTGATTTTACCACAGGGAATCCGGAAGTTAA
GGATAAAGCAACTTGGATTAAGACTTTGGGCAAAAATCCAGCACTGGTGA
AAATATANATTCTGATTTTACCACAGGGAATCCGGAAGTTAAGGATAAAG
CAACTTGGATTAAGACTTTGGGCAAAAATCCAGCACTGGTGAAAATATAT
GCTCAAGTAGAATGGTCAATAGTCGCTGAAAAATCTGGTGTGGTCTCCAA
AGCAATTGTCGCAAACTTAAAGAAAGCTGTGCAAAATCGAATGACATTGA
GTGAAAATCGACGAGTTAAGGAAGCCACAGAAACAGCAAAGAAGAGATTA
GAATATCTCCAAGGACCTCGTTCTGTTGTTGCTATGGTAGCACATGGCCG
TAGAGGAACCATTGCGCCACAACTTGAGACAGGTAAATACTTGACCTTGA
AAGGATTCAAAGAATGTCCGCCTGGTTTAAACATCGCGCAATCAAAATCC
ACCTGTAATACCGGCCTGTATATCACATCTTGGAACCATTTCCGATTAAC
GGAACCACTCCGGTATGAACGAAACGAAAAGGGCGAAATGCGGtctgtcc
ggtgttttgatttgGATTCCCGACGTCAATGCATCACTCATTATGGACCC
TGGGTAAGAAATGGTTGTTCACTGCAACCTTACG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004277	XLOC_004277	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000078	supercontig	sc0000078:247391..253574 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.402517	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00007570 vs. Swiss-Prot (Human)

BLAST of TCONS_00007570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00007570 (transcript) - C. hemisphaerica