|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007559 ID=TCONS_00007559|Name=TCONS_00007559|organism=Clytia hemisphaerica|type=transcript|length=684bp
tcaaatattttcaaagaagagCACAACAAATTACGAGCGAGTAGtgcATT
ATGAATTCAAAGCAAACAAAAGAGAGGAGAAGaagtgaaaagattttttt
gtaaataaccATTTGGAAAGATAGGACACCTACATTTAGCAACTTTCTGC
AGAAGAAAATGCGTACGAGGAGGTGGCTCTAGAAACGAGGAGAGATTTTT
TGTAAACTGGAGAGAACACGAGAAAGATGTATAAATTCGTACACAtcaac
attttttatatttcaagacttttttttatcatataCTTTCACGCACCACA
ATTTGTTTATACTGGCTCCGAAGGCGAAGTTCGGATTGTACTAGACTCAT
TATCAAACCCATACGGGGTCACTTCTGAAAATAAGTGCTGTGACGGAGGA
ATTAGAGATACTTTAACGTCGAAATGTCGTACGCCGTGTCGTATGCAGGT
CAAGTTTTGTATAACACCTGGTGATTTTTACCAAGTTCAGCAGTGCACTA
TGGGTAAAAGGACATCAGAGACTTTTCAAGGAAACGAAATTTCATTTGAG
TTGCCTGATTTAAATTTGAAGGAGCCTGTGTATGAGAATTATCAGCAGAT
TTCAAACACGacgaatttggaaaaatttgagaaagctGATGCATTGGTTT
TTCGAATCAAACACGCGCTAAGGGAGGAggtatg Run BLAST on NCBI transcript from alignment at sc0000078:185241..186932+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007559 ID=TCONS_00007559|Name=TCONS_00007559|organism=Clytia hemisphaerica|type=transcript|length=1692bp|location=Sequence derived from alignment at sc0000078:185241..186932+ (Clytia hemisphaerica)
tcaaatattttcaaagaagagCACAACAAATTACGAGCGAGTAGGTAGGT
GTGAGAGCATGTAGTATTTCATAAATTCCACTGAGCTGCATGAAATTATC
TTTCGTCAAAATCTAGATGCGATTTTCAAGCCGAAAATCATGGGGTATTT
ATTTGATGATTATAAATGcgtgatatttttaaaaaccttttctCATGCGG
AGATTTTGAATTGGAAAAGCAATTCAATGATAAAGTAAACATGTGTGTAT
TTATATGTTATATGCAATTTCTTTCATTGACTTTCGTTCGTTACACTTTG
TTacgacttcattttttttctcacttcgatattttctttctttttttgca
tttataAATATTAATTTGTGCATGCGCAGTAGATGAAACCACATGCTATC
AATTTTTCACGATCTTAGTCTCCAAGTGAAGTTGTTCGATGCTCGCGGAA
TGACAGTATGGATTGTTCTCTCGTCAAGTACTGGTTTAAAGTTGGAAGAG
CCATTATTTTTCAGCTTTCGtgttttttcttgcttgagatcttttttttt
atcGCAGGGTGTTTACTCTAGAAAGTTGGTAAgcaaatgagaaagaaaaa
aagaggcAAGAATAGTTTTTGagacaatttctttttttttcttcgtgaag
aaaatgtttgaaaattctttGTATTATGATGTTAAGTTCGAGTATTGATA
AATAACAAATCTGTGAAGATTTGAGACCGAATTGTGAATTAATAATATAA
CGTTTGGGGGAAAGACAATATTTTTACGAGTGGGGTCGAGAgtaactttt
tttgagaaaaaagagagaTACTATATACTACGTAAAGGATCTAAGGAACT
CTATGTCTTATTTATAAGGGGAAAATTATCAGTAAATTTGTATGCGAAGT
ATAGGTAGACGAGTATACCGAAATTATGATTTTCTTGAAGTTTTTTTCGT
TGGAAAATTAAATTGTATTTTGTAGAAAACGCCTCCAAAGTGTGTGGACT
TCTCATTATTTATTCTACTCTTTTGTgttgtaatatatttttttgttttc
agtgcATTATGAATTCAAAGCAAACAAAAGAGAGGAGAAGaagtgaaaag
atttttttgtaaataaccATTTGGAAAGATAGGACACCTACATTTAGCAA
CTTTCTGCAGAAGAAAATGCGTACGAGGAGGTGGCTCTAGAAACGAGGAG
AGATTTTTTGTAAACTGGAGAGAACACGAGAAAGATGTATAAATTCGTAC
ACAtcaacattttttatatttcaagacttttttttatcatataCTTTCAC
GCACCACAATTTGTTTATACTGGCTCCGAAGGCGAAGTTCGGATTGTACT
AGACTCATTATCAAACCCATACGGGGTCACTTCTGAAAATAAGTGCTGTG
ACGGAGGAATTAGAGATACTTTAACGTCGAAATGTCGTACGCCGTGTCGT
ATGCAGGTCAAGTTTTGTATAACACCTGGTGATTTTTACCAAGTTCAGCA
GTGCACTATGGGTAAAAGGACATCAGAGACTTTTCAAGGAAACGAAATTT
CATTTGAGTTGCCTGATTTAAATTTGAAGGAGCCTGTGTATGAGAATTAT
CAGCAGATTTCAAACACGacgaatttggaaaaatttgagaaagctGATGC
ATTGGTTTTTCGAATCAAACACGCGCTAAGGGAGGAggtatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007559-exon-sc0000078-1491911889:185241..185284 | TCONS_00007559-exon-sc0000078-1491911889:185241..185284 | Clytia hemisphaerica | exon |
| TCONS_00007559-exon-sc0000078-1510915933:185241..185284 | TCONS_00007559-exon-sc0000078-1510915933:185241..185284 | Clytia hemisphaerica | exon |
| TCONS_00007559-exon-sc0000078-1575043694:185241..185284 | TCONS_00007559-exon-sc0000078-1575043694:185241..185284 | Clytia hemisphaerica | exon |
| TCONS_00007559-exon-sc0000078-1491911889:186293..186932 | TCONS_00007559-exon-sc0000078-1491911889:186293..186932 | Clytia hemisphaerica | exon |
| TCONS_00007559-exon-sc0000078-1510915933:186293..186932 | TCONS_00007559-exon-sc0000078-1510915933:186293..186932 | Clytia hemisphaerica | exon |
| TCONS_00007559-exon-sc0000078-1575043694:186293..186932 | TCONS_00007559-exon-sc0000078-1575043694:186293..186932 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:185241..186932 + |
Blast
The following BLAST results are available for this feature:
|
