TCONS_00007540 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007540
Unique NameTCONS_00007540
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007540 ID=TCONS_00007540|Name=TCONS_00007540|organism=Clytia hemisphaerica|type=transcript|length=3620bp
atttaagcaAGACTTAAATAAATATAGCATGCAGGGTTTATGGAGTTATA
TAAGCAAAACTGGTCAAGGTCCTGGCAAAGACTTTCAATATGATATTGGA
GAAGTAGTTGATGTTGAAAAAAAGTCTCCTTGGGTCTTACATTGCGGTAA
AAAGAAGGGAACAAATGAAGATGTTACAGTGTTTGCATGTAATGCAAAAA
ATTGCCCTCCAGATGAGtttcAGCTTGCTAAATCTTCACACAAAAGATTA
AAGACACTGAGGCATCCTAATATCATAAAATACCTTGATGGCTTTGAGTC
CGAGGAGTTGGTATATGTGGTGACAGAGAAAGTTCGACCACTCATTCATG
TCCTTCAAGATGAAGATGATAAAGATAAAAATGCAAACCTCATTTCATGG
GGAATTCACCAAATCACTAGTGGTTTGAGCTTTCTTATAAATGATGGAAA
ACTTGTCCATGGCAATGTCAATGTCTTTTCCATTTTTGTGACTATTGATG
GAGAATGGAAACTTGGGGGTGTTGAATATGTCCATCCTGTTGCCAATGAT
CCCGTTGCTAAGATATCTGCATTGACCAGATATGATCCACCAGAGGGGAT
CGCATCAAAAAAGCAAGAACCTTGGTCAATAGATGCTTGGGGTCTTGGCT
GCTTGTTATGGGAAATTTTCAATGGTCCACTTGAAAACGCCTCAAATATG
AAGAAAGTTTCCAACATTCCAAAGTCTCTGGTTATTCACTATGGAAATCT
TGTGTGTGCCAACCCACGACAAAGAACCAATCCACGAGATTTCTTAAACA
ATGCAAAGAAGCCTGGTCAATACCTCAATAATTCATTCATCACGGCAAAT
ATATTTCTTCAAGAAATTCAGcTGAAGGATATTGAAGCTCAAAAACAGTT
CTTTGGAACACTTGACAAAACAATAGATGATTTTCCAAAGGACTTTTGTA
TACATAAAGTGTTACCACAGCTTTTGAATGCATATGAGTTCAGTACCGCA
GGATCTTCTGTTCTCTCCCCTCTTTTCAAGATTGGCTTGTTACTGGACGA
CGaagcttatgaaaaaaagattttaccaTGCATCATCAAGCTGTTTTCTT
CGAATGATCGGTCCACAAGAATCCACTTGCTGCAGCAGATGGAGAAATTT
GTCAAGCATCTGCAGAAGAGTGTGGTCAATAATCAAATCTTTCCGTGTGT
AGCAACAGGTTTCGGGGATACACTCCCTGCCATGAGAGAACAGACTGTCA
AAGCGATGTTGTTATTAGCACCAAAACTATCTGACAAAGCATTAGATCAA
CTGTTACGTTACTTTGCTAAACTACAAATGGATGAACAAGCAGGAATCAG
GACTAACACAACTATATGTCTTGGTAAAATTGCAGAACATCTGTCTGATC
AAACCAGAAAGAAGGTTTTAATTCCGGCGTTCGTCCGTTCATTCCGGGAT
CCTTTTCCACCGGCACGATCGGCCGGCGTTATGGCGCTGCTGGCGACGCA
ACAATATCACGACATCAGAGAAGTGGCGGGCCGTGTGTTACCGGCCCTTT
GTCCGCTGACCACAGATCCTGAAAAGATGGTCCGAGATAATGTGTTCAAA
GCCATCAAAACGTTCCTGGAAAAACTTGAAGATTTTTCGACAAACCCTCA
AAGTCCGCTGAATAATGAAGAAGCTGCGGTAGAAGAGGCAAACGGTCAGG
GTGGTTCCACGTGGACAGGGTGGGCGGTTTCTTCATTCGCATCGAGGTTT
TATCAGCAAGGTGCTGGCGCACAAGGTGGAACGCAGAAACCAGGCCCTCC
GAATCAACAGCAAAGTAAAGATACGAACAGTGGTAACAAACCAACAGGAA
TGACATTGAAAGGGAAAGaggaggagaagaagaagaCAATGAAGAACGAA
AAACATTTGGATAGTGGTGATGATAGTGATACGTTTAAGAGTTTGGATTC
CATAAAAGATGCCCTTATGGACGTCCGCGAAGAGGTTAGTCAATATAAGT
CGAGTAAAACGAAGGACGGAAACAAAAGTGATTCAGACCAAAGTGATTAC
GGAGATTGGAAAGATGATGGATGGGGCGTGCAACAAGATGACGCCAAAGA
TAAACATGGTGGAGGTGGTTGGGATGATACGGTTGCAGATGGTTGGAATG
ATCCTAGCCCAGGTGGTTGGGATGATACGGGTACAGATGATTGGGGTGTA
AGTGAAGCACCAAAGAAGACCAATACAACAACAGCAACGAAAAAGAAGAA
TGTCGACAAACTAAAGTCGTTCAGTACGGCTAATAATGAAAAGACTGTCA
ATGCCGCAGAAGGCTGGGGTGGTTGGGATGAAAGTAATAATACGATGACA
GGTGGTTGGGATGATGCAACAAACGACGAAGGTGGAGCTGGTTGGGATGT
AGACAATTTTGTTGCAACAGATAATTTGGGTGTAGAAAGCTCAGACGGTT
GGGGTGATAGTTTTGGACTGGAAGACAATACGAACAGTGGAGACTTCTGG
GATGATAAATTTAAAGAGAAGGATAAACAGGAACTTAAGAAAAAGCGTGA
AGAAGATTTAAGGAGAAAACGCGAAGAACGAAAAGCTCAACgtgaattaa
aaaataaaaatcgccGTGAAAAAACTGTAACCTCTGGAGGAGGTATGAAA
CTTGGGGCCGTCAAAAAGAAGGATTAATGTTGTGTGTTGGGATTTTATTA
GTGAAATATATtctattatatttttatatcaatTATTACATGCCTTGCCT
AGACTTGCATGGGGGTCGGGCGTTCGGCATTTCCGTAACCTATAAAATCT
TTTCGGTATTTGGAAATCCTTAAATTTTGGTTCAGtacattttcatgcta
aatttcgGAAATGACGACAAATTTCTTCGGGTTTTCGGAAATCAAAAATA
GTACGCTCCCACCTCCTTACATCTCCAAAAAAAACTGTTAGTCACAGATG
TGAcctcggaaaaaaaattgaaaaatttctagTTGAGTTAGATGACGTTC
TCCAAAAGCTACTTGGAGAACCGCAAGTTATTCGTGTTAAACCAATTAGT
TACAATCGCTTAGTCAAGAGTTCGCTGAATGTGCCTATTAGCTCCACATT
AAACTTAATGTGCAGAAAGTTACATTTATTAGGCACAATCGATAAGCACA
TTCATTTACACATAACTGAAAAACAACTATTTAAAAAGAGTTAATCACCT
GCTGACAGATGAACCAGTAGCGCGTCATACCAAAAACTCTTTCGTAGTTC
AAGTTTCGGAAAAGTCATTTAAATTTCTGCTTTCACAATTTACCCTACAA
TCACCCTTAATATATTGTTACAATATGAAATTTATTTCCTCGAATAATAT
CAATTTTCTACCTACATATTTATAATTTTGAGttggttttttaaaattta
agctCTGTTTTGGACCCAAATTCCTACATACCCATTCCTTCGGAAACTAA
AAAATTAACCATAACTAAATATGGAAAACAACAGAGAACGTCAAAATTTA
AAGCGTTGTCTTTGTCTCCCTCACTTCGTTATTGGAATTTAGTCATAGct
ttagattattttttaattaattatttaattattaaATGCTTTTATCCTTT
ATATATAAATTACAGCAGTT
Run BLAST on NCBI

transcript from alignment at sc0000078:17272..29336+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007540 ID=TCONS_00007540|Name=TCONS_00007540|organism=Clytia hemisphaerica|type=transcript|length=12065bp|location=Sequence derived from alignment at sc0000078:17272..29336+ (Clytia hemisphaerica)
atttaagcaAGACTTAAATAAATATAGCATGCAGGGTTTATGGAGTTATA
TAAGCAAAACTGGTCAAGGTCCTGGCAAAGACTTTCAATATGATATTGGA
GAAGTAGTTGATGTTGAAAAAAAGTCTCCTTGGGTCTTACATTGCGGTAA
AAAGAAGGTATGgcttcaaaattgattttaagcTTTGCAAGCTTGGTACA
TATACTTTACTTTTGGCCCTCACTTACCGGCCATTATTATTACAATATAT
ATCTCTTTTAATTTAGTGGTAAAACAAACATATACTTTACTTTTGGCCCT
CACTTACCGGCCATTATTATTACAATATATATCTCTTTTAATTTAGTGGT
AAAACAAACGATTTGTTTTGGcttttttggaatttctttccttttgcATT
GCAGGGAACAAATGAAGATGTTACAGTGTTTGCATGTAATGCAAAAAATT
GCCCTCCAGATGAGGTAATAGTAGttcattgttatttttttttaattaaa
agccAAAAATAATAGCAATGTTTCCTTCTCAAGAAATCAAGAATTAGATA
TATGATAATCCCTGCCAAATGAAATTGTTTCTGATTGTTCTGTCCCTCGA
AGAAATAACTTTTATTTGTACATTGATAAAACCTTTGCATGGTTATTCCA
AACAAGTTGAAGCTTCTcaacttaaaatatttttttctcgtgttttaatt
ttgattttgtttttgtttttagtttcAGCTTGCTAAATCTTCACACAAAA
GATTAAAGACACTGAGGCATCCTAATATCATAAAATACCTTGATGGCTTT
GAGGTAAGTTTATTacatttaaaaaactttatacCCAATTTCTTTGCTGT
CGTGTAAGAAATCGAGGAAGGCAAATTTGGTACCAAGTTGTAGACCTATA
TTTATATGACAGCTCGTTGCAATTATTTGAAATTGGAGGAAAACCAAATA
ANCCGTGTAAGAAATCGAGGAAGGGAAATTTGGTACCAAGTTGTAGACCT
ATATTTCTATGACAGTTTGTTGTAATTATTTGAAATTGGAGGAAAACCAA
ATAAATTTGAAGAGAAAAGTATACAAGATGAAAATTCTTCTAATGTCATC
ATCCACTGACTGTTCAGATTTAACTTGAACAACAACCTTTATCAGTCAGG
GACATCTGCAATAATGCTGTGATAGCCAAGGATGTTAGCCTAATTAGGCC
AGAATTCATATCCTAGTTAGGACATAAATCAGGATATTGACATAATCCAA
GCTTAAATATCTAGACAACAAGCAACATCTGTGTCAATGTAACTTTATTA
ACTTGTTATTTGGACAAGGAAGAGTTTTGAGTTAAAAATTGGTCCTTTTT
TAGAGTGGAGTGAAAAGATATAGGaagttttaaaaaagaaagcCTTATTT
TGGCCAAAATAAGATCTTCTTCAATTAAAAatgaacatgtttttttttct
catatcCAAACTAGGCTATAAATTCTAAGCCTAATTTGGATATCATATCC
AAGTTAGGCCATAATTGGCCAAAATAGCCTAATTTGCAGTCCCTGAGGCT
TCGTTTACAGTCACCCGACCCTAAATTTTGGAGGTGGATTTAAGTCCAGC
CTGACTGTTTATAAAACTGTTCTTTGAATCTTCTGTCCTTAGTCCGAGGA
GTTGGTATATGTGGTGACAGAGAAAGTTCGACCACTCATTCATGTCCTTC
AAGATGAAGATGATAAAGATAAAAATGCAAACCTCATTTCATGGGGAATT
CACCAAATCACTGTATgatctgtttgtttttcttttgatttctatTTTTC
CTATAATTTCGACTAGTCTTGCTTGGGAAGAGCTAGCTAAGATAATAGAA
ATATTATTTAATAACGACCTAAAAACGAGGCTCTATCAATGGACAAAGCC
AATAAAGAAACCTAGTTACAATACTTTCAATATCTTTCGGTTATTATTTC
AAGATTTCATTTACATTAAGATTAAGACCATTAAGACCATGCGCAAACGA
CCGCGTTAAATCATTAATTCACGGagtattattttcatttcattcagAGT
GGTTTGAGCTTTCTTATAAATGATGGAAAACTTGTCCATGGCAATGTCAA
TGTCTTTTCCATTTTTGTGACTATTGATGGAGAATGGAAACTTGGGGGTG
TTGAATATGTCCATCCTGTTGCCAATGATCCCGTTGCTAAGATATCTGCA
TTGACCAGATATGATCCACCAGAGGGGATCGCATCAAAAAAGCAAGAACC
TTGGTATGTTTAGTAAGAAGGAACTAGTTTTGGGAATCAACAGAACCAGA
GTTTTAAACGtcgtgtattttttgaaaaaaagtcgaCTGGACAGTGATTT
GAGGTTTTAAGTTGGATTAAAACTGTTTTCATGCTtgtcaattaaaaaaa
tcaatacaCGCTAAATCAACACAAAGGATTTATATTGAGGAAGTTTAttg
tggcttggatcacgagatttacgtttggctacgtttcgagagattctccT
ATTaatgtggaggatgttttcCCCACTATTTCTACTAATAGATCTTCTGG
GAAAAAGGATTTAAACTAAGTTTGATAAATACATAGcaatttttaagcat
ttagCATCATTCTTTTTATCTTTATGACTGTTTTATAGGTCAATAGATGC
TTGGGGTCTTGGCTGCTTGTTATGGGAAATTTTCAATGGTCCACTTGAAA
ACGCCTCAAATATGAAGAAAGTTTCCAACGTAAATATAACATAAATATTA
GAACTGCTTTAAACAAAGTCAAGTTGAAGGAAAGATTCAAGCTAATTTCT
TGATATTGAGGTGAAAAgatatttttgcttgattgttgAATAAAGGGTAC
CGTTAGAAGGATTGCATTAGTCTTTTTTGCTATGTTTTATTGCAACTTTA
AATAAAGAGTAATTCATTTTCTTAGATTCCAAAGTCTCTGGTTATTCACT
ATGGAAATCTTGTGTGTGCCAACCCACGACAAAGAACCAATCCACGAGAT
TTCTTAAACAATGCAAAGAAGCCTGGTCAATACCTCAATAATTCATTCAT
CACGGCAAATATATTTCTTCAAGAAATTCAGGTACAAAAAATCTAACGTT
GGATCACTTCAAGAAGCACATCTTCAAGTTTTAGCTTATTATTATGATTC
AAAGATAACAAAAGATAAAAGCATGAATGAAAATATCGAACCCAACAGTT
TTAATTGACTAACATGTCAGATATGTTTCATATCTTTTACGGATAATGAT
CtgatagaaaatttcatttttcattatttcagcTGAAGGATATTGAAGCT
CAAAAACAGTTCTTTGGAACACTTGACAAAACAATAGATGATTTTCCAAA
GGACTTTTGTATACATAAAGTGTTACCACAGCTTTTGAATGCATATGAGT
TCAGTACCGCAGGATCTTCTGTTCTCTCCCCTCTTTTCAAGGTGAATTGA
TTTGACTTTTCTAACTATACTTTGGCCCATTTTTTTCTAACTGTANAATC
AATACACGCTAAATCAACACAAAGGATTTATATTGAGGAAGTTTAttgtg
gcttggatcacgagatttacgtttggctacgtttcgagagattctccTAT
TaatgtggaggatgttttcCCCACTATTTCTACTAATAGATCTTCTGGGA
AAAAGGATTTAAACTAAGTTTGATAAATACATAGcaatttttaagcattt
agCATCATTCTTTTTATCTTTATGACTGTTTTATAGGTCAATAGATGCTT
GGGGTCTTGGCTGCTTGTTATGGGAAATTTTCAATGGTCCACTTGAAAAC
GCCTCAAATATGAAGAAAGTTTCCAACGTAAATATAACATAAATATTAGA
ACTGCTTTAAACAAAGTCAAGTTGAAGGAAAGATTCAAGCTAATTTCTTG
ATATTGAGGTGAAAAgatatttttgcttgattgttgAATAAAGGGTACCG
TTAGAAGGATTGCATTAGTCTTTTTTGCTATGTTTTATTGCAACTTTAAA
TAAAGAGTAATTCATTTTCTTAGATTCCAAAGTCTCTGGTTATTCACTAT
GGAAATCTTGTGTGTGCCAACCCACGACAAAGAACCAATCCACGAGATTT
CTTAAACAATGCAAAGAAGCCTGGTCAATACCTCAATAATTCATTCATCA
CGGCAAATATATTTCTTCAAGAAATTCAGGTACAAAAAATCTAACGTTGG
ATCACTTCAAGAAGCACATCTTCAAGTTTTAGCTTATTATTATGATTCAA
AGATAACAAAAGATAAAAGCATGAATGAAAATATCGAACCCAACAGTTTT
AATTGACTAACATGTCAGATATGTTTCATATCTTTTACGGATAATGATCt
gatagaaaatttcatttttcattatttcagcTGAAGGATATTGAAGCTCA
AAAACAGTTCTTTGGAACACTTGACAAAACAATAGATGATTTTCCAAAGG
ACTTTTGTATACATAAAGTGTTACCACAGCTTTTGAATGCATATGAGTTC
AGTACCGCAGGATCTTCTGTTCTCTCCCCTCTTTTCAAGGTGAATTGATT
TGACTTTTCTAACTATACTTTGGCCCATTTTTTTCTAACTGTAATTTGGC
CCAATGTTACAATGGCTGTAATGTGGAGATTATTTTAgatacaaaattga
aaatcaaggTTCCATTGTGTTTGGATCGTGGAATTATCATTTACCTAACT
CATTGCTACACTATAACTATACTTCTTTCTCTCTTTCGGCAGATTGGCTT
GTTACTGGACGACGaagcttatgaaaaaaagattttaccaTGCATCATCA
AGCTGTTTTCTTCGAATGATCGGTCCACAAGAATCCACTTGCTGCAGCAG
GTTTATCCATCATTCTCATTTTGATAGATTTCTTAGCTTTATGTTAGACC
AAGAATTTTTCCCTTTTCATTGATAATGCTTCTGCTAATTAAAAactatg
ttttttttctatctatTGGTTGGTGACTCGAGCGTCTTTGGCACCGTGGA
ATATGGGAGGGCCCTCATATTTTGCaggttaaattttttaaaaccttaaa
aacTCTTTATACGACTAGGTGACGTTTTTgcaaaaacaggaaaattttcT
TCATCGACCAACCAAGGCGGGCAgcgttttttggcaaaattttaaCCCCC
AACCTCGTTGTATTTCTCTAACCTATAAACCAATCTAACCTGTGTACACA
AAAAACACTAGCttcttcttaattttctttAGATGGAGAAATTTGTCAAG
CATCTGCAGAAGAGTGTGGTCAATAATCAAATCTTTCCGTGTGTAGCAAC
AGGTTTCGGGGATACACTCCCTGCCATGAGAGAACAGACTGTCAAAGTAA
TCCATCGGTTGTATATTATATTTTAAGTTTATGTATTTCGTCTTTTCTAT
CCTGTTTCTGGTTGAATTTTGGAGCTCGAAAAACCTTTCATGAAATTTCA
GTCTTGTCTAGATTGCACTTAGGTAAAGATGAGGGTAATTGTTCGTATCc
acattttttcgaaaaaatatcttCATCTGACATCATCATGTACAGGCTAT
GCTGCATTATAGCTCTCTTcattcatgaaattttggttttgtcTAGATTG
CACTTGGGTAAAGATAGTAGAGTATAGTCTTAGACTGAATGCGATGAGGG
TAATATTGTTCGTATCCACATTTctagaaaaaacattttcatctGACATC
AATCATAATgtacatatgctacattatagCTACTTTTCATTCATGAATTA
CTCATCCCTTACAGGCGATGTTGTTATTAGCACCAAAACTATCTGACAAA
GCATTAGATCAACTGTTACGTTACTTTGCTAAACTACAAATGGATGAACA
AGCAGGAATCAGGACTAACACAACTATATGTCTTGGTAAAATTGCAGAAC
ATCTGTCTGATCAAGTAAGCAAAGCTGTTTTGTTTTCACCGagtttattt
ttaccatttttgagTCTTTGAACATCCATTGCTAACCtttgcaatatttt
tacaaagctAACTGTGATTCGCCTTTAAATCCTCTTCTGTCCAATATGTA
ACTTAAGGgatttaattttcgcgagacagCTTGCCTCGCGAAATAATTTG
ATGTTCGCGGGACTGTAAATTTTCACGAAGATTTAATTTCGTAAATTGgc
gaattttttcagattttcacatttttcgttAGTTTGATTACGAGATTTTG
Tgtgtacagtagagtctccataactcaaacggctacgaggaatgaaaatt
tgtactagtaatcgtatggtttggagtgcaattaacgattaatcacgagt
aacaaaggagaaaatagtaatttgcacgagtccgaaggacaaGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNctagaaaagaataaggggacaaaagt
gtcccccgccgaagagtgcaaaaagtggtaatagtgcaattaacgattaa
ttgcactcctctaaaccaatcagattcgagtaattttgcacggctgacga
ttaattcgaataatagagacattcgagtaataGAGACTCGTTTAAGAGAG
TTCCTTAGCTGAAAGAATTTTTAgcgtaaaaaaattaaatttcgcgaatt
tagcGAGAGAtgagagtttgaaaattttcgcgaaggattatattttgcga
aaaaggcgaaattcgcgaaaattcgcgaagtataatccccgcaaaaattt
ACTCCCTTAAGATTATTCTATTTTTTCGAAGTAATAAATAACCGTATAGT
TTTATGTGGCCCATTGATTGAATGATTGTACTTCAACATGATAGCCATTT
ACATTGCTGTGATGTTGTTTTTCAGACCAGAAAGAAGGTTTTAATTCCGG
CGTTCGTCCGTTCATTCCGGGATCCTTTTCCACCGGCACGATCGGCCGGC
GTTATGGCGCTGCTGGCGACGCAACAATATCACGACATCAGAGAAGTGGC
GGGCCGTGTGTTACCGGCCCTTTGTCCGCTGACCACAGATCCTGAAAAGA
TGGTCCGAGATAATGTAAGCTAAGTTTTAAGCAGGTTCTTCTTTTTACTC
ATTGTTTGCGttgatattttttacaaaataataaaGTTAGTACCGCCAAT
CTGGATTCATATTATAAATGAGACAGGTTGTAACTTTCATCACCTTCAAA
CAGgagattttttttctatctaCTTCAAGTAAATTAatgataatttttat
tttttctacgatttttttttacaattttctaaGGTGTTCAAAGCCATCAA
AACGTTCCTGGAAAAACTTGAAGATTTTTCGACAAACCCTCAAAGTCCGC
TGAATAATGAAGGTACGTTTAGCGATTTCAAGGATAGACAGCTGCAGTTT
TTCCACACTTATAAGTTACTGTTGCAAGATTTTAAGAACCGATTCAGGGA
ACAGAATTTGCTTTGCAATTAAAATAGCAAACCCTAAACGATGTGGTTCC
AGTTTTACTTGTTTTACATCCTTTTGCAATTCGCCTGAATGATGGCTTTG
TTCTGCAGTTCACCCAAGGGCCAAGTGACGAACACTGAATTATTGGATGA
TGATAGGATGTCCACTACACTAGAGTCCAAAAGTCTATCAAGGGTGTGCG
AAAGCTTTAGGAAGGTTACCTAGTCTAGATGTAGActactaatttaaaac
tttatacTAAAATGCtactaaaattatttcaaactaAAAAGAGAGACGCG
CcccagagagagagagagcaagAATTAGTATAATTATAATTATGAAAACT
CTCTCTCGTGCGATTTTTTATAGCAGACTTACTCTTTTTCGGCTTTGTGG
CAGAGTTACCCTTATATAATGGTCTGGAAATCGAGACAAGAAGGTTACgc
gattttttttaaaaccttGATAACCCAGCGTACTTTGACGGAgataaaat
gaatatttttacttattatTCCTCTACAGAAGCTGCGGTAGAAGAGGCAA
ACGGTCAGGGTGGTTCCACGTGGACAGGGTGGGCGGTTTCTTCATTCGCA
TCGAGGTTTTATCAGCAAGGTGCTGGCGCACAAGGTGGAACGCAGAAACC
AGGCCCTCCGAATCAACAGCAAAGTAAAGGTATATTCGCTATGTGCTATT
CCACCCACCGAAAAGAACATCAATATCAATTAATTCATTTTTGCTTAGAA
ATTAGCTCTAGCCATTGCGTTTTTGTTTGCAACTTGTTCCGTGTTCCTAG
TTGTCTTAGAGAATGAAAATTGTTCAAGCTATAAAAGCAACACCCATTAT
TGATATATCGGGAGGTGTATTTCTGAAGAGTGGCTTAGTTTACCCAGTCA
TGGATGGATTTCTCTTCGTTTGAATCGCATTTGTTCCCCTTTTTCAGGAC
TTTAAACTATTGAGGTTTTTCAAGTAACGTAAGTTCCTcaattatggaag
caaacgttcgaatctgtagagacGATCCCTTACGTAATTCGAACGTTAGC
TTCTATAATGGTGGAAGTTACGCAACttagaaaacatgaaaaacctccCA
TGCTTGATTTATTGTTAAACCTCTTTTAACGTTCTTCATACGTTCGAAAA
AGATACGAACAGTGGTAACAAACCAACAGGAATGACATTGAAAGGGAAAG
aggaggagaagaagaagaCAATGAAGAACGAAAAACATTTGGATAGTGGT
GATGATAGTGATACGTTTAAGGTTTGTGGATTTTTTGTCATAGCAACTAC
ACCAGTTCAAACGTCCGTTAGATTCTGTTATTTTACCCATGTAGCAATCC
ACCTTTACCGGAATGTATTAGCTCTTTTCATCCCACTTTTCGTATACATG
TAACACGGTATGCCAGTCTTCCCTTTCTCATTACGTTTTGAGCACTTCAC
TATTCTTCCTNATGCCAGTCTTCCCTTTCTCATTATGTTTTGAGCACTTC
ACTATTCTTCCTTTTTTGTTAGAGTTTGGATTCCATAAAAGATGCCCTTA
TGGACGTCCGCGAAGAGGTTAGTCAATATAAGGTAAGACCTATCCCTTTT
ATACAAAAAACATTAGATTTCACTCAGTGATTTCTTACGAAGAGGTTAGT
CAATATAAGGTAAGACCTATCCCTTTTATACAAAAAACATTAGATTTAAC
TCAGTGATTTCTTACGAAGATCTTAGTCAATATAAGGTAAGACCTATCCC
TTTTATACAAAAAACATTAGATTTAACTCAGTGATTTCCTACGAAGAAGT
TAGTCAATATAAGGTAAGACCTATCCCTTTTATACAAAAAACATTAGATT
TAACTCAGTGATTTCTTACGAAGAAGTTAGTCAATATAAGGTAAGACCTA
TCCCTTTTATACAAAAAACATTAGATTTAACTCAGTGATTTCTTACGAAG
AGGTTAGTCAATATAAGGTAAGACCTATCCCTTTTATACAAAAAACATTA
GATTTAACTCAGTGATTTCTTACGAAGAGGTTAGTCAATATAAGGTAAGA
CCAATCCCTTTTATACAAAAAACATTAGATTTAACTCCAGTGATTTCTTA
CGATTATCGAAAGACTTGAAGCCAGGATGGCTTACAGCCCGCTCTAAtgt
caattataatttttatgtAAAGAGTATGGTGTATAAAAATACGGATAACT
TTGTCTTTTCCTTTTCAGTCGAGTAAAACGAAGGACGGAAACAAAAGTGA
TTCAGACCAAAGTGATTACGGAGATTGGAAAGATGATGGATGGGGCGTGC
AACAAGATGACGCCAAAGATAAACATGGTGGAGGTGGTTGGGATGATACG
GTTGCAGATGGTTGGAATGATCCTAGCCCAGGTGGTTGGGATGATACGGG
TACAGATGATTGGGGTGTAAGTGAAGCACCAAAGAAGACCAATACAACAA
CAGCAACGAAAAAGGTTTGGAATTTATTTGCCCCTACTTTTACCGGAGGA
AAGGAATGATTTTCTTCAGGAATGGCACGAATTATGTGGTTTTACTGCTA
GAGTCTTTCTCGGTTCCTGTTAAGTCGAATTTGAACTAAAAACTAAGTCT
CTACAAAGTTTAAATTTGCTATCCTATTTTTCATTCATAGAAGAATGTCG
ACAAACTAAAGTCGTTCAGTACGGCTAATAATGAAAAGACTGTCAATGCC
GCAGAAGGCTGGGGTGGTTGGGATGAAAGTAATAATACGATGACAGGTGG
TTGGGATGATGCAACAAACGACGAAGGTGGAGCTGGTTGGGATGTAGACA
ATTTTGTTGCAACAGATAATTTGGGTGTAGAAAGCTCAGACGGTTGGGGT
GATAGTTTTGGACTGGAAGACAATACGAACAGTGGAGACTTCTGGGATGA
TAAATTTAAAGAGAAGGATAAACAGGAACTTAAGAAAAAGCGTGAAGAAG
ATTTAAGGAGAAAACGCGAAGAACGAAAAGCTCAACgtgaattaaaaaat
aaaaatcgccGTGAAAAAACTGTAACCTCTGGAGGAGGTATGAAACTTGG
GGCCGTCAAAAAGAAGGATTAATGTTGTGTGTTGGGATTTTATTAGTGAA
ATATATtctattatatttttatatcaatTATTACATGCCTTGCCTAGACT
TGCATGGGGGTCGGGCGTTCGGCATTTCCGTAACCTATAAAATCTTTTCG
GTATTTGGAAATCCTTAAATTTTGGTTCAGtacattttcatgctaaattt
cgGAAATGACGACAAATTTCTTCGGGTTTTCGGAAATCAAAAATAGTACG
CTCCCACCTCCTTACATCTCCAAAAAAAACTGTTAGTCACAGATGTGAcc
tcggaaaaaaaattgaaaaatttctagTTGAGTTAGATGACGTTCTCCAA
AAGCTACTTGGAGAACCGCAAGTTATTCGTGTTAAACCAATTAGTTACAA
TCGCTTAGTCAAGAGTTCGCTGAATGTGCCTATTAGCTCCACATTAAACT
TAATGTGCAGAAAGTTACATTTATTAGGCACAATCGATAAGCACATTCAT
TTACACATAACTGAAAAACAACTATTTAAAAAGAGTTAATCACCTGCTGA
CAGATGAACCAGTAGCGCGTCATACCAAAAACTCTTTCGTAGTTCAAGTT
TCGGAAAAGTCATTTAAATTTCTGCTTTCACAATTTACCCTACAATCACC
CTTAATATATTGTTACAATATGAAATTTATTTCCTCGAATAATATCAATT
TTCTACCTACATATTTATAATTTTGAGttggttttttaaaatttaagctC
TGTTTTGGACCCAAATTCCTACATACCCATTCCTTCGGAAACTAAAAAAT
TAACCATAACTAAATATGGAAAACAACAGAGAACGTCAAAATTTAAAGCG
TTGTCTTTGTCTCCCTCACTTCGTTATTGGAATTTAGTCATAGctttaga
ttattttttaattaattatttaattattaaATGCTTTTATCCTTTATATA
TAAATTACAGCAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004263XLOC_004263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007540-exon-sc0000078-1491911889:17272..17428TCONS_00007540-exon-sc0000078-1491911889:17272..17428Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:17272..17428TCONS_00007540-exon-sc0000078-1510915933:17272..17428Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:17272..17428TCONS_00007540-exon-sc0000078-1575043694:17272..17428Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1491911889:17676..17735TCONS_00007540-exon-sc0000078-1491911889:17676..17735Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:17676..17735TCONS_00007540-exon-sc0000078-1510915933:17676..17735Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:17676..17735TCONS_00007540-exon-sc0000078-1575043694:17676..17735Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1491911889:17994..18074TCONS_00007540-exon-sc0000078-1491911889:17994..18074Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:17994..18074TCONS_00007540-exon-sc0000078-1510915933:17994..18074Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:17994..18074TCONS_00007540-exon-sc0000078-1575043694:17994..18074Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1491911889:18914..19033TCONS_00007540-exon-sc0000078-1491911889:18914..19033Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:18914..19033TCONS_00007540-exon-sc0000078-1510915933:18914..19033Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:18914..19033TCONS_00007540-exon-sc0000078-1575043694:18914..19033Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1491911889:19319..19524TCONS_00007540-exon-sc0000078-1491911889:19319..19524Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:19319..19524TCONS_00007540-exon-sc0000078-1510915933:19319..19524Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:19319..19524TCONS_00007540-exon-sc0000078-1575043694:19319..19524Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1491911889:21008..21098TCONS_00007540-exon-sc0000078-1491911889:21008..21098Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:21008..21098TCONS_00007540-exon-sc0000078-1510915933:21008..21098Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:21008..21098TCONS_00007540-exon-sc0000078-1575043694:21008..21098Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1491911889:21295..21450TCONS_00007540-exon-sc0000078-1491911889:21295..21450Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:21295..21450TCONS_00007540-exon-sc0000078-1510915933:21295..21450Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:21295..21450TCONS_00007540-exon-sc0000078-1575043694:21295..21450Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1491911889:21652..21810TCONS_00007540-exon-sc0000078-1491911889:21652..21810Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:21652..21810TCONS_00007540-exon-sc0000078-1510915933:21652..21810Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:21652..21810TCONS_00007540-exon-sc0000078-1575043694:21652..21810Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1491911889:22014..22121TCONS_00007540-exon-sc0000078-1491911889:22014..22121Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:22014..22121TCONS_00007540-exon-sc0000078-1510915933:22014..22121Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:22014..22121TCONS_00007540-exon-sc0000078-1575043694:22014..22121Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1491911889:22504..22617TCONS_00007540-exon-sc0000078-1491911889:22504..22617Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:22504..22617TCONS_00007540-exon-sc0000078-1510915933:22504..22617Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:22504..22617TCONS_00007540-exon-sc0000078-1575043694:22504..22617Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1491911889:23036..23185TCONS_00007540-exon-sc0000078-1491911889:23036..23185Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:23036..23185TCONS_00007540-exon-sc0000078-1510915933:23036..23185Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:23036..23185TCONS_00007540-exon-sc0000078-1575043694:23036..23185Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1491911889:24747..24935TCONS_00007540-exon-sc0000078-1491911889:24747..24935Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:24747..24935TCONS_00007540-exon-sc0000078-1510915933:24747..24935Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:24747..24935TCONS_00007540-exon-sc0000078-1575043694:24747..24935Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1491911889:25155..25233TCONS_00007540-exon-sc0000078-1491911889:25155..25233Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:25155..25233TCONS_00007540-exon-sc0000078-1510915933:25155..25233Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:25155..25233TCONS_00007540-exon-sc0000078-1575043694:25155..25233Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1491911889:25851..26000TCONS_00007540-exon-sc0000078-1491911889:25851..26000Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:25851..26000TCONS_00007540-exon-sc0000078-1510915933:25851..26000Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:25851..26000TCONS_00007540-exon-sc0000078-1575043694:25851..26000Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1491911889:26474..26592TCONS_00007540-exon-sc0000078-1491911889:26474..26592Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:26474..26592TCONS_00007540-exon-sc0000078-1510915933:26474..26592Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:26474..26592TCONS_00007540-exon-sc0000078-1575043694:26474..26592Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1491911889:26844..26903TCONS_00007540-exon-sc0000078-1491911889:26844..26903Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:26844..26903TCONS_00007540-exon-sc0000078-1510915933:26844..26903Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:26844..26903TCONS_00007540-exon-sc0000078-1575043694:26844..26903Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1491911889:27540..27785TCONS_00007540-exon-sc0000078-1491911889:27540..27785Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:27540..27785TCONS_00007540-exon-sc0000078-1510915933:27540..27785Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:27540..27785TCONS_00007540-exon-sc0000078-1575043694:27540..27785Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1491911889:27962..29336TCONS_00007540-exon-sc0000078-1491911889:27962..29336Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1510915933:27962..29336TCONS_00007540-exon-sc0000078-1510915933:27962..29336Clytia hemisphaericaexon
TCONS_00007540-exon-sc0000078-1575043694:27962..29336TCONS_00007540-exon-sc0000078-1575043694:27962..29336Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:17272..29336 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.40149	1.23349	1.34823	0.63202	1.78577	0.00900981	0.157547	0.618381	1.93832	2.86436	1.81588	1.03215	1.87714	1.29692	2.11609	1.92932	2.62755	2.30195	0.890639	1.716	1.36345	1.27379	2.43462	1.59895	0.0325346	0.0337126	1.0071	1.42612	2.49147	2.12788
Blast
[Close]
BLAST of TCONS_00007540 vs. Swiss-Prot (Human)
Match: SCYL1 (N-terminal kinase-like protein OS=Homo sapiens GN=SCYL1 PE=1 SV=1)

HSP 1 Score: 544.273 bits (1401), Expect = 2.533e-176
Identity = 268/537 (49.91%), Postives = 364/537 (67.78%), Query Frame = 2 
Query:   71 PGKDFQYD-IGEVVDVEKKSPWVLHCGKKKGTNEDVTVFACNAKNCPPDEFQLAKSSHKRLKTLRHPNIIKYLDGFESEELVYVVTEKVRPLIHVLQDEDDKDKNANL-ISWGIHQITSGLSFLINDGKLVHGNVNVFSIFVTIDGEWKLGGVEYVHPVAND----PVAKISALTRYDPPEGIASKKQ---EPWSIDAWGLGCLLWEIFNGPLENASNMKKVSNIPKSLVIHYGNLVCANPRQRTNPRDFLNNAKKPGQYLNNSFITANIFLQEIQLKDIEAQKQFFGTLDKTIDDFPKDFCIHKVLPQLLNAYEFSTAGSSVLSPLFKIGLLLDDEAYEKKILPCIIKLFSSNDRSTRIHLLQQMEKFVKHLQKSVVNNQIFPCVATGFGDTLPAMREQTVKAMLLLAPKLSDKALD-QLLRYFAKLQM-DEQAGIRTNTTICLGKIAEHLSDQTRKKVLIPAFVRSFRDPFPPARSAGVMALLATQQYHDIREVAGRVLPALCPLTTDPEKMVRDNVFKAIKTFLEKLEDFSTNP 1648
            P +DF ++ I E  +     PW LH G+KK T   V++F  + K    ++ Q+AK++ KR KTLRHPNI+ Y+DG E+E+ ++VVTE V PL   L+   +      L ISWG+HQI   LSFL+ND  L+H NV + ++FV   GEWKLGG++Y++    +    P   I  L +YDPPE   S  +   E WS D W LGCL+WE+FNGPL  A+ ++    IPK+LV HY  LV ANP+ R NP  FL N + PG +++N F+  N+FL+EIQ+K+   +++FF  L K++D FP+DFC HKVLPQLL A+EF  AG+ VL+PLFK+G  L  E Y++KI+P ++K+FSS DR+ RI LLQQME+F+++L +  VN QIFP V  GF DT PA+REQTVK+MLLLAPKL++  L+ +L+++FA+LQ  DEQ  IR NTT+CLGKI  +LS  TR +VL  AF R+ RDPF P+R AGV+   AT   + + + A ++LP LC LT DPEK VRD  FKAI++FL KLE  S +P
Sbjct:    8 PVRDFPFELIPEPPEGGLPGPWALHRGRKKATGSPVSIFVYDVKPGAEEQTQVAKAAFKRFKTLRHPNILAYIDGLETEKCLHVVTEAVTPLGIYLKARVEAGGLKELEISWGLHQIVKALSFLVNDCSLIHNNVCMAAVFVDRAGEWKLGGLDYMYSAQGNGGGPPRKGIPELEQYDPPELADSSGRVVREKWSADMWRLGCLIWEVFNGPLPRAAALRNPGKIPKTLVPHYCELVGANPKVRPNPARFLQNCRAPGGFMSNRFVETNLFLEEIQIKEPAEKQKFFQELSKSLDAFPEDFCRHKVLPQLLTAFEFGNAGAVVLTPLFKVGKFLSAEEYQQKIIPVVVKMFSSTDRAMRIRLLQQMEQFIQYLDEPTVNTQIFPHVVHGFLDTNPAIREQTVKSMLLLAPKLNEANLNVELMKHFARLQAKDEQGPIRCNTTVCLGKIGSYLSASTRHRVLTSAFSRATRDPFAPSRVAGVLGFAATHNLYSMNDCAQKILPVLCGLTVDPEKSVRDQAFKAIRSFLSKLESVSEDP 544
The following BLAST results are available for this feature:
BLAST of TCONS_00007540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCYL12.533e-17649.91N-terminal kinase-like protein OS=Homo sapiens GN=... [more]
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