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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007537 ID=TCONS_00007537|Name=TCONS_00007537|organism=Clytia hemisphaerica|type=transcript|length=3620bpRun BLAST on NCBI protein sequence of TCONS_00007537-protein >TCONS_00007537-protein ID=TCONS_00007537-protein|Name=TCONS_00007537-protein|organism=Clytia hemisphaerica|type=polypeptide|length=891bp FKQDLNKYSMQGLWSYISKTGQGPGKDFQYDIGEVVDVEKKSPWVLHCGKRun BLAST on NCBI transcript from alignment at sc0000078:17272..29336+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007537 ID=TCONS_00007537|Name=TCONS_00007537|organism=Clytia hemisphaerica|type=transcript|length=12065bp|location=Sequence derived from alignment at sc0000078:17272..29336+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000078:17272..29336+ >TCONS_00007537 ID=TCONS_00007537|Name=TCONS_00007537|organism=Clytia hemisphaerica|type=CDS|length=48168bp|location=Sequence derived from alignment at sc0000078:17272..29336+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007537 vs. Swiss-Prot (Human)
Match: SCYL1 (N-terminal kinase-like protein OS=Homo sapiens GN=SCYL1 PE=1 SV=1) HSP 1 Score: 544.273 bits (1401), Expect = 2.533e-176 Identity = 268/537 (49.91%), Postives = 364/537 (67.78%), Query Frame = 2
Query: 71 PGKDFQYD-IGEVVDVEKKSPWVLHCGKKKGTNEDVTVFACNAKNCPPDEFQLAKSSHKRLKTLRHPNIIKYLDGFESEELVYVVTEKVRPLIHVLQDEDDKDKNANL-ISWGIHQITSGLSFLINDGKLVHGNVNVFSIFVTIDGEWKLGGVEYVHPVAND----PVAKISALTRYDPPEGIASKKQ---EPWSIDAWGLGCLLWEIFNGPLENASNMKKVSNIPKSLVIHYGNLVCANPRQRTNPRDFLNNAKKPGQYLNNSFITANIFLQEIQLKDIEAQKQFFGTLDKTIDDFPKDFCIHKVLPQLLNAYEFSTAGSSVLSPLFKIGLLLDDEAYEKKILPCIIKLFSSNDRSTRIHLLQQMEKFVKHLQKSVVNNQIFPCVATGFGDTLPAMREQTVKAMLLLAPKLSDKALD-QLLRYFAKLQM-DEQAGIRTNTTICLGKIAEHLSDQTRKKVLIPAFVRSFRDPFPPARSAGVMALLATQQYHDIREVAGRVLPALCPLTTDPEKMVRDNVFKAIKTFLEKLEDFSTNP 1648
P +DF ++ I E + PW LH G+KK T V++F + K ++ Q+AK++ KR KTLRHPNI+ Y+DG E+E+ ++VVTE V PL L+ + L ISWG+HQI LSFL+ND L+H NV + ++FV GEWKLGG++Y++ + P I L +YDPPE S + E WS D W LGCL+WE+FNGPL A+ ++ IPK+LV HY LV ANP+ R NP FL N + PG +++N F+ N+FL+EIQ+K+ +++FF L K++D FP+DFC HKVLPQLL A+EF AG+ VL+PLFK+G L E Y++KI+P ++K+FSS DR+ RI LLQQME+F+++L + VN QIFP V GF DT PA+REQTVK+MLLLAPKL++ L+ +L+++FA+LQ DEQ IR NTT+CLGKI +LS TR +VL AF R+ RDPF P+R AGV+ AT + + + A ++LP LC LT DPEK VRD FKAI++FL KLE S +P
Sbjct: 8 PVRDFPFELIPEPPEGGLPGPWALHRGRKKATGSPVSIFVYDVKPGAEEQTQVAKAAFKRFKTLRHPNILAYIDGLETEKCLHVVTEAVTPLGIYLKARVEAGGLKELEISWGLHQIVKALSFLVNDCSLIHNNVCMAAVFVDRAGEWKLGGLDYMYSAQGNGGGPPRKGIPELEQYDPPELADSSGRVVREKWSADMWRLGCLIWEVFNGPLPRAAALRNPGKIPKTLVPHYCELVGANPKVRPNPARFLQNCRAPGGFMSNRFVETNLFLEEIQIKEPAEKQKFFQELSKSLDAFPEDFCRHKVLPQLLTAFEFGNAGAVVLTPLFKVGKFLSAEEYQQKIIPVVVKMFSSTDRAMRIRLLQQMEQFIQYLDEPTVNTQIFPHVVHGFLDTNPAIREQTVKSMLLLAPKLNEANLNVELMKHFARLQAKDEQGPIRCNTTVCLGKIGSYLSASTRHRVLTSAFSRATRDPFAPSRVAGVLGFAATHNLYSMNDCAQKILPVLCGLTVDPEKSVRDQAFKAIRSFLSKLESVSEDP 544 The following BLAST results are available for this feature:
BLAST of TCONS_00007537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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