TCONS_00007535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007535
Unique NameTCONS_00007535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3704

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007535 ID=TCONS_00007535|Name=TCONS_00007535|organism=Clytia hemisphaerica|type=transcript|length=3704bp
TGAGACCTTTTTTAGAGAACAATTCAGAGTTGTTAGTACTAGGTTTATTC
AATAGTTTCTTCAATGTAAAGCTCTGGTATAataatcatattttttttta
tttaagcaAGACTTAAATAAATATAGCATGCAGGGTTTATGGAGTTATAT
AAGCAAAACTGGTCAAGGTCCTGGCAAAGACTTTCAATATGATATTGGAG
AAGTAGTTGATGTTGAAAAAAAGTCTCCTTGGGTCTTACATTGCGGTAAA
AAGAAGGGAACAAATGAAGATGTTACAGTGTTTGCATGTAATGCAAAAAA
TTGCCCTCCAGATGAGtttcAGCTTGCTAAATCTTCACACAAAAGATTAA
AGACACTGAGGCATCCTAATATCATAAAATACCTTGATGGCTTTGAGTCC
GAGGAGTTGGTATATGTGGTGACAGAGAAAGTTCGACCACTCATTCATGT
CCTTCAAGATGAAGATGATAAAGATAAAAATGCAAACCTCATTTCATGGG
GAATTCACCAAATCACTAGTGGTTTGAGCTTTCTTATAAATGATGGAAAA
CTTGTCCATGGCAATGTCAATGTCTTTTCCATTTTTGTGACTATTGATGG
AGAATGGAAACTTGGGGGTGTTGAATATGTCCATCCTGTTGCCAATGATC
CCGTTGCTAAGATATCTGCATTGACCAGATATGATCCACCAGAGGGGATC
GCATCAAAAAAGCAAGAACCTTGGTCAATAGATGCTTGGGGTCTTGGCTG
CTTGTTATGGGAAATTTTCAATGGTCCACTTGAAAACGCCTCAAATATGA
AGAAAGTTTCCAACATTCCAAAGTCTCTGGTTATTCACTATGGAAATCTT
GTGTGTGCCAACCCACGACAAAGAACCAATCCACGAGATTTCTTAAACAA
TGCAAAGAAGCCTGGTCAATACCTCAATAATTCATTCATCACGGCAAATA
TATTTCTTCAAGAAATTCAGcTGAAGGATATTGAAGCTCAAAAACAGTTC
TTTGGAACACTTGACAAAACAATAGATGATTTTCCAAAGGACTTTTGTAT
ACATAAAGTGTTACCACAGCTTTTGAATGCATATGAGTTCAGTACCGCAG
GATCTTCTGTTCTCTCCCCTCTTTTCAAGATTGGCTTGTTACTGGACGAC
GaagcttatgaaaaaaagattttaccaTGCATCATCAAGCTGTTTTCTTC
GAATGATCGGTCCACAAGAATCCACTTGCTGCAGCAGATGGAGAAATTTG
TCAAGCATCTGCAGAAGAGTGTGGTCAATAATCAAATCTTTCCGTGTGTA
GCAACAGGTTTCGGGGATACACTCCCTGCCATGAGAGAACAGACTGTCAA
AGCGATGTTGTTATTAGCACCAAAACTATCTGACAAAGCATTAGATCAAC
TGTTACGTTACTTTGCTAAACTACAAATGGATGAACAAGCAGGAATCAGG
ACTAACACAACTATATGTCTTGGTAAAATTGCAGAACATCTGTCTGATCA
AACCAGAAAGAAGGTTTTAATTCCGGCGTTCGTCCGTTCATTCCGGGATC
CTTTTCCACCGGCACGATCGGCCGGCGTTATGGCGCTGCTGGCGACGCAA
CAATATCACGACATCAGAGAAGTGGCGGGCCGTGTGTTACCGGCCCTTTG
TCCGCTGACCACAGATCCTGAAAAGATGGTCCGAGATAATGTGTTCAAAG
CCATCAAAACGTTCCTGGAAAAACTTGAAGATTTTTCGACAAACCCTCAA
AGTCCGCTGAATAATGAAGAAGCTGCGGTAGAAGAGGCAAACGGTCAGGG
TGGTTCCACGTGGACAGGGTGGGCGGTTTCTTCATTCGCATCGAGGTTTT
ATCAGCAAGGTGCTGGCGCACAAGGTGGAACGCAGAAACCAGGCCCTCCG
AATCAACAGCAAAGTAAAGATACGAACAGTGGTAACAAACCAACAGGAAT
GACATTGAAAGGGAAAGaggaggagaagaagaagaCAATGAAGAACGAAA
AACATTTGGATAGTGGTGATGATAGTGATACGTTTAAGAGTTTGGATTCC
ATAAAAGATGCCCTTATGGACGTCCGCGAAGAGTCGAGTAAAACGAAGGA
CGGAAACAAAAGTGATTCAGACCAAAGTGATTACGGAGATTGGAAAGATG
ATGGATGGGGCGTGCAACAAGATGACGCCAAAGATAAACATGGTGGAGGT
GGTTGGGATGATACGGTTGCAGATGGTTGGAATGATCCTAGCCCAGGTGG
TTGGGATGATACGGGTACAGATGATTGGGGTGTAAGTGAAGCACCAAAGA
AGACCAATACAACAACAGCAACGAAAAAGAAGAATGTCGACAAACTAAAG
TCGTTCAGTACGGCTAATAATGAAAAGACTGTCAATGCCGCAGAAGGCTG
GGGTGGTTGGGATGAAAGTAATAATACGATGACAGGTGGTTGGGATGATG
CAACAAACGACGAAGGTGGAGCTGGTTGGGATGTAGACAATTTTGTTGCA
ACAGATAATTTGGGTGTAGAAAGCTCAGACGGTTGGGGTGATAGTTTTGG
ACTGGAAGACAATACGAACAGTGGAGACTTCTGGGATGATAAATTTAAAG
AGAAGGATAAACAGGAACTTAAGAAAAAGCGTGAAGAAGATTTAAGGAGA
AAACGCGAAGAACGAAAAGCTCAACgtgaattaaaaaataaaaatcgccG
TGAAAAAACTGTAACCTCTGGAGGAGGTATGAAACTTGGGGCCGTCAAAA
AGAAGGATTAATGTTGTGTGTTGGGATTTTATTAGTGAAATATATtctat
tatatttttatatcaatTATTACATGCCTTGCCTAGACTTGCATGGGGGT
CGGGCGTTCGGCATTTCCGTAACCTATAAAATCTTTTCGGTATTTGGAAA
TCCTTAAATTTTGGTTCAGtacattttcatgctaaatttcgGAAATGACG
ACAAATTTCTTCGGGTTTTCGGAAATCAAAAATAGTACGCTCCCACCTCC
TTACATCTCCAAAAAAAACTGTTAGTCACAGATGTGAcctcggaaaaaaa
attgaaaaatttctagTTGAGTTAGATGACGTTCTCCAAAAGCTACTTGG
AGAACCGCAAGTTATTCGTGTTAAACCAATTAGTTACAATCGCTTAGTCA
AGAGTTCGCTGAATGTGCCTATTAGCTCCACATTAAACTTAATGTGCAGA
AAGTTACATTTATTAGGCACAATCGATAAGCACATTCATTTACACATAAC
TGAAAAACAACTATTTAAAAAGAGTTAATCACCTGCTGACAGATGAACCA
GTAGCGCGTCATACCAAAAACTCTTTCGTAGTTCAAGTTTCGGAAAAGTC
ATTTAAATTTCTGCTTTCACAATTTACCCTACAATCACCCTTAATATATT
GTTACAATATGAAATTTATTTCCTCGAATAATATCAATTTTCTACCTACA
TATTTATAATTTTGAGttggttttttaaaatttaagctCTGTTTTGGACC
CAAATTCCTACATACCCATTCCTTCGGAAACTAAAAAATTAACCATAACT
AAATATGGAAAACAACAGAGAACGTCAAAATTTAAAGCGTTGTCTTTGTC
TCCCTCACTTCGTTATTGGAATTTAGTCATAGctttagattattttttaa
ttaattatttaattattaaATGCTTTTATCCTTTATATATAAATTACAGC
AGTT
Run BLAST on NCBI

transcript from alignment at sc0000078:17173..29336+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007535 ID=TCONS_00007535|Name=TCONS_00007535|organism=Clytia hemisphaerica|type=transcript|length=12164bp|location=Sequence derived from alignment at sc0000078:17173..29336+ (Clytia hemisphaerica)
TGAGACCTTTTTTAGAGAACAATTCAGAGTTGTTAGTACTAGGTTTATTC
AATAGTTTCTTCAATGTAAAGCTCTGGTATAataatcatattttttttta
tttaagcaAGACTTAAATAAATATAGCATGCAGGGTTTATGGAGTTATAT
AAGCAAAACTGGTCAAGGTCCTGGCAAAGACTTTCAATATGATATTGGAG
AAGTAGTTGATGTTGAAAAAAAGTCTCCTTGGGTCTTACATTGCGGTAAA
AAGAAGGTATGgcttcaaaattgattttaagcTTTGCAAGCTTGGTACAT
ATACTTTACTTTTGGCCCTCACTTACCGGCCATTATTATTACAATATATA
TCTCTTTTAATTTAGTGGTAAAACAAACATATACTTTACTTTTGGCCCTC
ACTTACCGGCCATTATTATTACAATATATATCTCTTTTAATTTAGTGGTA
AAACAAACGATTTGTTTTGGcttttttggaatttctttccttttgcATTG
CAGGGAACAAATGAAGATGTTACAGTGTTTGCATGTAATGCAAAAAATTG
CCCTCCAGATGAGGTAATAGTAGttcattgttatttttttttaattaaaa
gccAAAAATAATAGCAATGTTTCCTTCTCAAGAAATCAAGAATTAGATAT
ATGATAATCCCTGCCAAATGAAATTGTTTCTGATTGTTCTGTCCCTCGAA
GAAATAACTTTTATTTGTACATTGATAAAACCTTTGCATGGTTATTCCAA
ACAAGTTGAAGCTTCTcaacttaaaatatttttttctcgtgttttaattt
tgattttgtttttgtttttagtttcAGCTTGCTAAATCTTCACACAAAAG
ATTAAAGACACTGAGGCATCCTAATATCATAAAATACCTTGATGGCTTTG
AGGTAAGTTTATTacatttaaaaaactttatacCCAATTTCTTTGCTGTC
GTGTAAGAAATCGAGGAAGGCAAATTTGGTACCAAGTTGTAGACCTATAT
TTATATGACAGCTCGTTGCAATTATTTGAAATTGGAGGAAAACCAAATAA
NCCGTGTAAGAAATCGAGGAAGGGAAATTTGGTACCAAGTTGTAGACCTA
TATTTCTATGACAGTTTGTTGTAATTATTTGAAATTGGAGGAAAACCAAA
TAAATTTGAAGAGAAAAGTATACAAGATGAAAATTCTTCTAATGTCATCA
TCCACTGACTGTTCAGATTTAACTTGAACAACAACCTTTATCAGTCAGGG
ACATCTGCAATAATGCTGTGATAGCCAAGGATGTTAGCCTAATTAGGCCA
GAATTCATATCCTAGTTAGGACATAAATCAGGATATTGACATAATCCAAG
CTTAAATATCTAGACAACAAGCAACATCTGTGTCAATGTAACTTTATTAA
CTTGTTATTTGGACAAGGAAGAGTTTTGAGTTAAAAATTGGTCCTTTTTT
AGAGTGGAGTGAAAAGATATAGGaagttttaaaaaagaaagcCTTATTTT
GGCCAAAATAAGATCTTCTTCAATTAAAAatgaacatgtttttttttctc
atatcCAAACTAGGCTATAAATTCTAAGCCTAATTTGGATATCATATCCA
AGTTAGGCCATAATTGGCCAAAATAGCCTAATTTGCAGTCCCTGAGGCTT
CGTTTACAGTCACCCGACCCTAAATTTTGGAGGTGGATTTAAGTCCAGCC
TGACTGTTTATAAAACTGTTCTTTGAATCTTCTGTCCTTAGTCCGAGGAG
TTGGTATATGTGGTGACAGAGAAAGTTCGACCACTCATTCATGTCCTTCA
AGATGAAGATGATAAAGATAAAAATGCAAACCTCATTTCATGGGGAATTC
ACCAAATCACTGTATgatctgtttgtttttcttttgatttctatTTTTCC
TATAATTTCGACTAGTCTTGCTTGGGAAGAGCTAGCTAAGATAATAGAAA
TATTATTTAATAACGACCTAAAAACGAGGCTCTATCAATGGACAAAGCCA
ATAAAGAAACCTAGTTACAATACTTTCAATATCTTTCGGTTATTATTTCA
AGATTTCATTTACATTAAGATTAAGACCATTAAGACCATGCGCAAACGAC
CGCGTTAAATCATTAATTCACGGagtattattttcatttcattcagAGTG
GTTTGAGCTTTCTTATAAATGATGGAAAACTTGTCCATGGCAATGTCAAT
GTCTTTTCCATTTTTGTGACTATTGATGGAGAATGGAAACTTGGGGGTGT
TGAATATGTCCATCCTGTTGCCAATGATCCCGTTGCTAAGATATCTGCAT
TGACCAGATATGATCCACCAGAGGGGATCGCATCAAAAAAGCAAGAACCT
TGGTATGTTTAGTAAGAAGGAACTAGTTTTGGGAATCAACAGAACCAGAG
TTTTAAACGtcgtgtattttttgaaaaaaagtcgaCTGGACAGTGATTTG
AGGTTTTAAGTTGGATTAAAACTGTTTTCATGCTtgtcaattaaaaaaat
caatacaCGCTAAATCAACACAAAGGATTTATATTGAGGAAGTTTAttgt
ggcttggatcacgagatttacgtttggctacgtttcgagagattctccTA
TTaatgtggaggatgttttcCCCACTATTTCTACTAATAGATCTTCTGGG
AAAAAGGATTTAAACTAAGTTTGATAAATACATAGcaatttttaagcatt
tagCATCATTCTTTTTATCTTTATGACTGTTTTATAGGTCAATAGATGCT
TGGGGTCTTGGCTGCTTGTTATGGGAAATTTTCAATGGTCCACTTGAAAA
CGCCTCAAATATGAAGAAAGTTTCCAACGTAAATATAACATAAATATTAG
AACTGCTTTAAACAAAGTCAAGTTGAAGGAAAGATTCAAGCTAATTTCTT
GATATTGAGGTGAAAAgatatttttgcttgattgttgAATAAAGGGTACC
GTTAGAAGGATTGCATTAGTCTTTTTTGCTATGTTTTATTGCAACTTTAA
ATAAAGAGTAATTCATTTTCTTAGATTCCAAAGTCTCTGGTTATTCACTA
TGGAAATCTTGTGTGTGCCAACCCACGACAAAGAACCAATCCACGAGATT
TCTTAAACAATGCAAAGAAGCCTGGTCAATACCTCAATAATTCATTCATC
ACGGCAAATATATTTCTTCAAGAAATTCAGGTACAAAAAATCTAACGTTG
GATCACTTCAAGAAGCACATCTTCAAGTTTTAGCTTATTATTATGATTCA
AAGATAACAAAAGATAAAAGCATGAATGAAAATATCGAACCCAACAGTTT
TAATTGACTAACATGTCAGATATGTTTCATATCTTTTACGGATAATGATC
tgatagaaaatttcatttttcattatttcagcTGAAGGATATTGAAGCTC
AAAAACAGTTCTTTGGAACACTTGACAAAACAATAGATGATTTTCCAAAG
GACTTTTGTATACATAAAGTGTTACCACAGCTTTTGAATGCATATGAGTT
CAGTACCGCAGGATCTTCTGTTCTCTCCCCTCTTTTCAAGGTGAATTGAT
TTGACTTTTCTAACTATACTTTGGCCCATTTTTTTCTAACTGTANAATCA
ATACACGCTAAATCAACACAAAGGATTTATATTGAGGAAGTTTAttgtgg
cttggatcacgagatttacgtttggctacgtttcgagagattctccTATT
aatgtggaggatgttttcCCCACTATTTCTACTAATAGATCTTCTGGGAA
AAAGGATTTAAACTAAGTTTGATAAATACATAGcaatttttaagcattta
gCATCATTCTTTTTATCTTTATGACTGTTTTATAGGTCAATAGATGCTTG
GGGTCTTGGCTGCTTGTTATGGGAAATTTTCAATGGTCCACTTGAAAACG
CCTCAAATATGAAGAAAGTTTCCAACGTAAATATAACATAAATATTAGAA
CTGCTTTAAACAAAGTCAAGTTGAAGGAAAGATTCAAGCTAATTTCTTGA
TATTGAGGTGAAAAgatatttttgcttgattgttgAATAAAGGGTACCGT
TAGAAGGATTGCATTAGTCTTTTTTGCTATGTTTTATTGCAACTTTAAAT
AAAGAGTAATTCATTTTCTTAGATTCCAAAGTCTCTGGTTATTCACTATG
GAAATCTTGTGTGTGCCAACCCACGACAAAGAACCAATCCACGAGATTTC
TTAAACAATGCAAAGAAGCCTGGTCAATACCTCAATAATTCATTCATCAC
GGCAAATATATTTCTTCAAGAAATTCAGGTACAAAAAATCTAACGTTGGA
TCACTTCAAGAAGCACATCTTCAAGTTTTAGCTTATTATTATGATTCAAA
GATAACAAAAGATAAAAGCATGAATGAAAATATCGAACCCAACAGTTTTA
ATTGACTAACATGTCAGATATGTTTCATATCTTTTACGGATAATGATCtg
atagaaaatttcatttttcattatttcagcTGAAGGATATTGAAGCTCAA
AAACAGTTCTTTGGAACACTTGACAAAACAATAGATGATTTTCCAAAGGA
CTTTTGTATACATAAAGTGTTACCACAGCTTTTGAATGCATATGAGTTCA
GTACCGCAGGATCTTCTGTTCTCTCCCCTCTTTTCAAGGTGAATTGATTT
GACTTTTCTAACTATACTTTGGCCCATTTTTTTCTAACTGTAATTTGGCC
CAATGTTACAATGGCTGTAATGTGGAGATTATTTTAgatacaaaattgaa
aatcaaggTTCCATTGTGTTTGGATCGTGGAATTATCATTTACCTAACTC
ATTGCTACACTATAACTATACTTCTTTCTCTCTTTCGGCAGATTGGCTTG
TTACTGGACGACGaagcttatgaaaaaaagattttaccaTGCATCATCAA
GCTGTTTTCTTCGAATGATCGGTCCACAAGAATCCACTTGCTGCAGCAGG
TTTATCCATCATTCTCATTTTGATAGATTTCTTAGCTTTATGTTAGACCA
AGAATTTTTCCCTTTTCATTGATAATGCTTCTGCTAATTAAAAactatgt
tttttttctatctatTGGTTGGTGACTCGAGCGTCTTTGGCACCGTGGAA
TATGGGAGGGCCCTCATATTTTGCaggttaaattttttaaaaccttaaaa
acTCTTTATACGACTAGGTGACGTTTTTgcaaaaacaggaaaattttcTT
CATCGACCAACCAAGGCGGGCAgcgttttttggcaaaattttaaCCCCCA
ACCTCGTTGTATTTCTCTAACCTATAAACCAATCTAACCTGTGTACACAA
AAAACACTAGCttcttcttaattttctttAGATGGAGAAATTTGTCAAGC
ATCTGCAGAAGAGTGTGGTCAATAATCAAATCTTTCCGTGTGTAGCAACA
GGTTTCGGGGATACACTCCCTGCCATGAGAGAACAGACTGTCAAAGTAAT
CCATCGGTTGTATATTATATTTTAAGTTTATGTATTTCGTCTTTTCTATC
CTGTTTCTGGTTGAATTTTGGAGCTCGAAAAACCTTTCATGAAATTTCAG
TCTTGTCTAGATTGCACTTAGGTAAAGATGAGGGTAATTGTTCGTATCca
cattttttcgaaaaaatatcttCATCTGACATCATCATGTACAGGCTATG
CTGCATTATAGCTCTCTTcattcatgaaattttggttttgtcTAGATTGC
ACTTGGGTAAAGATAGTAGAGTATAGTCTTAGACTGAATGCGATGAGGGT
AATATTGTTCGTATCCACATTTctagaaaaaacattttcatctGACATCA
ATCATAATgtacatatgctacattatagCTACTTTTCATTCATGAATTAC
TCATCCCTTACAGGCGATGTTGTTATTAGCACCAAAACTATCTGACAAAG
CATTAGATCAACTGTTACGTTACTTTGCTAAACTACAAATGGATGAACAA
GCAGGAATCAGGACTAACACAACTATATGTCTTGGTAAAATTGCAGAACA
TCTGTCTGATCAAGTAAGCAAAGCTGTTTTGTTTTCACCGagtttatttt
taccatttttgagTCTTTGAACATCCATTGCTAACCtttgcaatattttt
acaaagctAACTGTGATTCGCCTTTAAATCCTCTTCTGTCCAATATGTAA
CTTAAGGgatttaattttcgcgagacagCTTGCCTCGCGAAATAATTTGA
TGTTCGCGGGACTGTAAATTTTCACGAAGATTTAATTTCGTAAATTGgcg
aattttttcagattttcacatttttcgttAGTTTGATTACGAGATTTTGT
gtgtacagtagagtctccataactcaaacggctacgaggaatgaaaattt
gtactagtaatcgtatggtttggagtgcaattaacgattaatcacgagta
acaaaggagaaaatagtaatttgcacgagtccgaaggacaaGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNctagaaaagaataaggggacaaaagtg
tcccccgccgaagagtgcaaaaagtggtaatagtgcaattaacgattaat
tgcactcctctaaaccaatcagattcgagtaattttgcacggctgacgat
taattcgaataatagagacattcgagtaataGAGACTCGTTTAAGAGAGT
TCCTTAGCTGAAAGAATTTTTAgcgtaaaaaaattaaatttcgcgaattt
agcGAGAGAtgagagtttgaaaattttcgcgaaggattatattttgcgaa
aaaggcgaaattcgcgaaaattcgcgaagtataatccccgcaaaaatttA
CTCCCTTAAGATTATTCTATTTTTTCGAAGTAATAAATAACCGTATAGTT
TTATGTGGCCCATTGATTGAATGATTGTACTTCAACATGATAGCCATTTA
CATTGCTGTGATGTTGTTTTTCAGACCAGAAAGAAGGTTTTAATTCCGGC
GTTCGTCCGTTCATTCCGGGATCCTTTTCCACCGGCACGATCGGCCGGCG
TTATGGCGCTGCTGGCGACGCAACAATATCACGACATCAGAGAAGTGGCG
GGCCGTGTGTTACCGGCCCTTTGTCCGCTGACCACAGATCCTGAAAAGAT
GGTCCGAGATAATGTAAGCTAAGTTTTAAGCAGGTTCTTCTTTTTACTCA
TTGTTTGCGttgatattttttacaaaataataaaGTTAGTACCGCCAATC
TGGATTCATATTATAAATGAGACAGGTTGTAACTTTCATCACCTTCAAAC
AGgagattttttttctatctaCTTCAAGTAAATTAatgataatttttatt
ttttctacgatttttttttacaattttctaaGGTGTTCAAAGCCATCAAA
ACGTTCCTGGAAAAACTTGAAGATTTTTCGACAAACCCTCAAAGTCCGCT
GAATAATGAAGGTACGTTTAGCGATTTCAAGGATAGACAGCTGCAGTTTT
TCCACACTTATAAGTTACTGTTGCAAGATTTTAAGAACCGATTCAGGGAA
CAGAATTTGCTTTGCAATTAAAATAGCAAACCCTAAACGATGTGGTTCCA
GTTTTACTTGTTTTACATCCTTTTGCAATTCGCCTGAATGATGGCTTTGT
TCTGCAGTTCACCCAAGGGCCAAGTGACGAACACTGAATTATTGGATGAT
GATAGGATGTCCACTACACTAGAGTCCAAAAGTCTATCAAGGGTGTGCGA
AAGCTTTAGGAAGGTTACCTAGTCTAGATGTAGActactaatttaaaact
ttatacTAAAATGCtactaaaattatttcaaactaAAAAGAGAGACGCGC
cccagagagagagagagcaagAATTAGTATAATTATAATTATGAAAACTC
TCTCTCGTGCGATTTTTTATAGCAGACTTACTCTTTTTCGGCTTTGTGGC
AGAGTTACCCTTATATAATGGTCTGGAAATCGAGACAAGAAGGTTACgcg
attttttttaaaaccttGATAACCCAGCGTACTTTGACGGAgataaaatg
aatatttttacttattatTCCTCTACAGAAGCTGCGGTAGAAGAGGCAAA
CGGTCAGGGTGGTTCCACGTGGACAGGGTGGGCGGTTTCTTCATTCGCAT
CGAGGTTTTATCAGCAAGGTGCTGGCGCACAAGGTGGAACGCAGAAACCA
GGCCCTCCGAATCAACAGCAAAGTAAAGGTATATTCGCTATGTGCTATTC
CACCCACCGAAAAGAACATCAATATCAATTAATTCATTTTTGCTTAGAAA
TTAGCTCTAGCCATTGCGTTTTTGTTTGCAACTTGTTCCGTGTTCCTAGT
TGTCTTAGAGAATGAAAATTGTTCAAGCTATAAAAGCAACACCCATTATT
GATATATCGGGAGGTGTATTTCTGAAGAGTGGCTTAGTTTACCCAGTCAT
GGATGGATTTCTCTTCGTTTGAATCGCATTTGTTCCCCTTTTTCAGGACT
TTAAACTATTGAGGTTTTTCAAGTAACGTAAGTTCCTcaattatggaagc
aaacgttcgaatctgtagagacGATCCCTTACGTAATTCGAACGTTAGCT
TCTATAATGGTGGAAGTTACGCAACttagaaaacatgaaaaacctccCAT
GCTTGATTTATTGTTAAACCTCTTTTAACGTTCTTCATACGTTCGAAAAA
GATACGAACAGTGGTAACAAACCAACAGGAATGACATTGAAAGGGAAAGa
ggaggagaagaagaagaCAATGAAGAACGAAAAACATTTGGATAGTGGTG
ATGATAGTGATACGTTTAAGGTTTGTGGATTTTTTGTCATAGCAACTACA
CCAGTTCAAACGTCCGTTAGATTCTGTTATTTTACCCATGTAGCAATCCA
CCTTTACCGGAATGTATTAGCTCTTTTCATCCCACTTTTCGTATACATGT
AACACGGTATGCCAGTCTTCCCTTTCTCATTACGTTTTGAGCACTTCACT
ATTCTTCCTNATGCCAGTCTTCCCTTTCTCATTATGTTTTGAGCACTTCA
CTATTCTTCCTTTTTTGTTAGAGTTTGGATTCCATAAAAGATGCCCTTAT
GGACGTCCGCGAAGAGGTTAGTCAATATAAGGTAAGACCTATCCCTTTTA
TACAAAAAACATTAGATTTCACTCAGTGATTTCTTACGAAGAGGTTAGTC
AATATAAGGTAAGACCTATCCCTTTTATACAAAAAACATTAGATTTAACT
CAGTGATTTCTTACGAAGATCTTAGTCAATATAAGGTAAGACCTATCCCT
TTTATACAAAAAACATTAGATTTAACTCAGTGATTTCCTACGAAGAAGTT
AGTCAATATAAGGTAAGACCTATCCCTTTTATACAAAAAACATTAGATTT
AACTCAGTGATTTCTTACGAAGAAGTTAGTCAATATAAGGTAAGACCTAT
CCCTTTTATACAAAAAACATTAGATTTAACTCAGTGATTTCTTACGAAGA
GGTTAGTCAATATAAGGTAAGACCTATCCCTTTTATACAAAAAACATTAG
ATTTAACTCAGTGATTTCTTACGAAGAGGTTAGTCAATATAAGGTAAGAC
CAATCCCTTTTATACAAAAAACATTAGATTTAACTCCAGTGATTTCTTAC
GATTATCGAAAGACTTGAAGCCAGGATGGCTTACAGCCCGCTCTAAtgtc
aattataatttttatgtAAAGAGTATGGTGTATAAAAATACGGATAACTT
TGTCTTTTCCTTTTCAGTCGAGTAAAACGAAGGACGGAAACAAAAGTGAT
TCAGACCAAAGTGATTACGGAGATTGGAAAGATGATGGATGGGGCGTGCA
ACAAGATGACGCCAAAGATAAACATGGTGGAGGTGGTTGGGATGATACGG
TTGCAGATGGTTGGAATGATCCTAGCCCAGGTGGTTGGGATGATACGGGT
ACAGATGATTGGGGTGTAAGTGAAGCACCAAAGAAGACCAATACAACAAC
AGCAACGAAAAAGGTTTGGAATTTATTTGCCCCTACTTTTACCGGAGGAA
AGGAATGATTTTCTTCAGGAATGGCACGAATTATGTGGTTTTACTGCTAG
AGTCTTTCTCGGTTCCTGTTAAGTCGAATTTGAACTAAAAACTAAGTCTC
TACAAAGTTTAAATTTGCTATCCTATTTTTCATTCATAGAAGAATGTCGA
CAAACTAAAGTCGTTCAGTACGGCTAATAATGAAAAGACTGTCAATGCCG
CAGAAGGCTGGGGTGGTTGGGATGAAAGTAATAATACGATGACAGGTGGT
TGGGATGATGCAACAAACGACGAAGGTGGAGCTGGTTGGGATGTAGACAA
TTTTGTTGCAACAGATAATTTGGGTGTAGAAAGCTCAGACGGTTGGGGTG
ATAGTTTTGGACTGGAAGACAATACGAACAGTGGAGACTTCTGGGATGAT
AAATTTAAAGAGAAGGATAAACAGGAACTTAAGAAAAAGCGTGAAGAAGA
TTTAAGGAGAAAACGCGAAGAACGAAAAGCTCAACgtgaattaaaaaata
aaaatcgccGTGAAAAAACTGTAACCTCTGGAGGAGGTATGAAACTTGGG
GCCGTCAAAAAGAAGGATTAATGTTGTGTGTTGGGATTTTATTAGTGAAA
TATATtctattatatttttatatcaatTATTACATGCCTTGCCTAGACTT
GCATGGGGGTCGGGCGTTCGGCATTTCCGTAACCTATAAAATCTTTTCGG
TATTTGGAAATCCTTAAATTTTGGTTCAGtacattttcatgctaaatttc
gGAAATGACGACAAATTTCTTCGGGTTTTCGGAAATCAAAAATAGTACGC
TCCCACCTCCTTACATCTCCAAAAAAAACTGTTAGTCACAGATGTGAcct
cggaaaaaaaattgaaaaatttctagTTGAGTTAGATGACGTTCTCCAAA
AGCTACTTGGAGAACCGCAAGTTATTCGTGTTAAACCAATTAGTTACAAT
CGCTTAGTCAAGAGTTCGCTGAATGTGCCTATTAGCTCCACATTAAACTT
AATGTGCAGAAAGTTACATTTATTAGGCACAATCGATAAGCACATTCATT
TACACATAACTGAAAAACAACTATTTAAAAAGAGTTAATCACCTGCTGAC
AGATGAACCAGTAGCGCGTCATACCAAAAACTCTTTCGTAGTTCAAGTTT
CGGAAAAGTCATTTAAATTTCTGCTTTCACAATTTACCCTACAATCACCC
TTAATATATTGTTACAATATGAAATTTATTTCCTCGAATAATATCAATTT
TCTACCTACATATTTATAATTTTGAGttggttttttaaaatttaagctCT
GTTTTGGACCCAAATTCCTACATACCCATTCCTTCGGAAACTAAAAAATT
AACCATAACTAAATATGGAAAACAACAGAGAACGTCAAAATTTAAAGCGT
TGTCTTTGTCTCCCTCACTTCGTTATTGGAATTTAGTCATAGctttagat
tattttttaattaattatttaattattaaATGCTTTTATCCTTTATATAT
AAATTACAGCAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004263XLOC_004263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007535-exon-sc0000078-1491911889:17173..17428TCONS_00007535-exon-sc0000078-1491911889:17173..17428Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:17173..17428TCONS_00007535-exon-sc0000078-1510915933:17173..17428Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:17173..17428TCONS_00007535-exon-sc0000078-1575043694:17173..17428Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1491911889:17676..17735TCONS_00007535-exon-sc0000078-1491911889:17676..17735Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:17676..17735TCONS_00007535-exon-sc0000078-1510915933:17676..17735Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:17676..17735TCONS_00007535-exon-sc0000078-1575043694:17676..17735Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1491911889:17994..18074TCONS_00007535-exon-sc0000078-1491911889:17994..18074Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:17994..18074TCONS_00007535-exon-sc0000078-1510915933:17994..18074Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:17994..18074TCONS_00007535-exon-sc0000078-1575043694:17994..18074Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1491911889:18914..19033TCONS_00007535-exon-sc0000078-1491911889:18914..19033Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:18914..19033TCONS_00007535-exon-sc0000078-1510915933:18914..19033Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:18914..19033TCONS_00007535-exon-sc0000078-1575043694:18914..19033Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1491911889:19319..19524TCONS_00007535-exon-sc0000078-1491911889:19319..19524Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:19319..19524TCONS_00007535-exon-sc0000078-1510915933:19319..19524Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:19319..19524TCONS_00007535-exon-sc0000078-1575043694:19319..19524Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1491911889:21008..21098TCONS_00007535-exon-sc0000078-1491911889:21008..21098Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:21008..21098TCONS_00007535-exon-sc0000078-1510915933:21008..21098Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:21008..21098TCONS_00007535-exon-sc0000078-1575043694:21008..21098Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1491911889:21295..21450TCONS_00007535-exon-sc0000078-1491911889:21295..21450Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:21295..21450TCONS_00007535-exon-sc0000078-1510915933:21295..21450Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:21295..21450TCONS_00007535-exon-sc0000078-1575043694:21295..21450Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1491911889:21652..21810TCONS_00007535-exon-sc0000078-1491911889:21652..21810Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:21652..21810TCONS_00007535-exon-sc0000078-1510915933:21652..21810Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:21652..21810TCONS_00007535-exon-sc0000078-1575043694:21652..21810Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1491911889:22014..22121TCONS_00007535-exon-sc0000078-1491911889:22014..22121Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:22014..22121TCONS_00007535-exon-sc0000078-1510915933:22014..22121Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:22014..22121TCONS_00007535-exon-sc0000078-1575043694:22014..22121Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1491911889:22504..22617TCONS_00007535-exon-sc0000078-1491911889:22504..22617Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:22504..22617TCONS_00007535-exon-sc0000078-1510915933:22504..22617Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:22504..22617TCONS_00007535-exon-sc0000078-1575043694:22504..22617Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1491911889:23036..23185TCONS_00007535-exon-sc0000078-1491911889:23036..23185Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:23036..23185TCONS_00007535-exon-sc0000078-1510915933:23036..23185Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:23036..23185TCONS_00007535-exon-sc0000078-1575043694:23036..23185Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1491911889:24747..24935TCONS_00007535-exon-sc0000078-1491911889:24747..24935Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:24747..24935TCONS_00007535-exon-sc0000078-1510915933:24747..24935Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:24747..24935TCONS_00007535-exon-sc0000078-1575043694:24747..24935Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1491911889:25155..25233TCONS_00007535-exon-sc0000078-1491911889:25155..25233Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:25155..25233TCONS_00007535-exon-sc0000078-1510915933:25155..25233Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:25155..25233TCONS_00007535-exon-sc0000078-1575043694:25155..25233Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1491911889:25851..26000TCONS_00007535-exon-sc0000078-1491911889:25851..26000Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:25851..26000TCONS_00007535-exon-sc0000078-1510915933:25851..26000Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:25851..26000TCONS_00007535-exon-sc0000078-1575043694:25851..26000Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1491911889:26474..26592TCONS_00007535-exon-sc0000078-1491911889:26474..26592Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:26474..26592TCONS_00007535-exon-sc0000078-1510915933:26474..26592Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:26474..26592TCONS_00007535-exon-sc0000078-1575043694:26474..26592Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1491911889:26844..26888TCONS_00007535-exon-sc0000078-1491911889:26844..26888Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:26844..26888TCONS_00007535-exon-sc0000078-1510915933:26844..26888Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:26844..26888TCONS_00007535-exon-sc0000078-1575043694:26844..26888Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1491911889:27540..27785TCONS_00007535-exon-sc0000078-1491911889:27540..27785Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:27540..27785TCONS_00007535-exon-sc0000078-1510915933:27540..27785Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:27540..27785TCONS_00007535-exon-sc0000078-1575043694:27540..27785Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1491911889:27962..29336TCONS_00007535-exon-sc0000078-1491911889:27962..29336Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1510915933:27962..29336TCONS_00007535-exon-sc0000078-1510915933:27962..29336Clytia hemisphaericaexon
TCONS_00007535-exon-sc0000078-1575043694:27962..29336TCONS_00007535-exon-sc0000078-1575043694:27962..29336Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:17173..29336 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.497665	0.384647	0.245844	0.191031	1.4466	1.60872	2.06911	1.59166	0.302856	0.194793	0.518808	0.338888	0.321169	0.862582	0.106678	0.566209	0.67835	0.832142	0.516901	0.299977	0.483663	0.357228	0	1.36673	1.48988	1.93769	0.565018	0	0.664621	1.23278
Blast
[Close]
BLAST of TCONS_00007535 vs. Swiss-Prot (Human)
Match: SCYL1 (N-terminal kinase-like protein OS=Homo sapiens GN=SCYL1 PE=1 SV=1)

HSP 1 Score: 543.888 bits (1400), Expect = 7.506e-176
Identity = 268/537 (49.91%), Postives = 364/537 (67.78%), Query Frame = 2 
Query:  170 PGKDFQYD-IGEVVDVEKKSPWVLHCGKKKGTNEDVTVFACNAKNCPPDEFQLAKSSHKRLKTLRHPNIIKYLDGFESEELVYVVTEKVRPLIHVLQDEDDKDKNANL-ISWGIHQITSGLSFLINDGKLVHGNVNVFSIFVTIDGEWKLGGVEYVHPVAND----PVAKISALTRYDPPEGIASKKQ---EPWSIDAWGLGCLLWEIFNGPLENASNMKKVSNIPKSLVIHYGNLVCANPRQRTNPRDFLNNAKKPGQYLNNSFITANIFLQEIQLKDIEAQKQFFGTLDKTIDDFPKDFCIHKVLPQLLNAYEFSTAGSSVLSPLFKIGLLLDDEAYEKKILPCIIKLFSSNDRSTRIHLLQQMEKFVKHLQKSVVNNQIFPCVATGFGDTLPAMREQTVKAMLLLAPKLSDKALD-QLLRYFAKLQM-DEQAGIRTNTTICLGKIAEHLSDQTRKKVLIPAFVRSFRDPFPPARSAGVMALLATQQYHDIREVAGRVLPALCPLTTDPEKMVRDNVFKAIKTFLEKLEDFSTNP 1747
            P +DF ++ I E  +     PW LH G+KK T   V++F  + K    ++ Q+AK++ KR KTLRHPNI+ Y+DG E+E+ ++VVTE V PL   L+   +      L ISWG+HQI   LSFL+ND  L+H NV + ++FV   GEWKLGG++Y++    +    P   I  L +YDPPE   S  +   E WS D W LGCL+WE+FNGPL  A+ ++    IPK+LV HY  LV ANP+ R NP  FL N + PG +++N F+  N+FL+EIQ+K+   +++FF  L K++D FP+DFC HKVLPQLL A+EF  AG+ VL+PLFK+G  L  E Y++KI+P ++K+FSS DR+ RI LLQQME+F+++L +  VN QIFP V  GF DT PA+REQTVK+MLLLAPKL++  L+ +L+++FA+LQ  DEQ  IR NTT+CLGKI  +LS  TR +VL  AF R+ RDPF P+R AGV+   AT   + + + A ++LP LC LT DPEK VRD  FKAI++FL KLE  S +P
Sbjct:    8 PVRDFPFELIPEPPEGGLPGPWALHRGRKKATGSPVSIFVYDVKPGAEEQTQVAKAAFKRFKTLRHPNILAYIDGLETEKCLHVVTEAVTPLGIYLKARVEAGGLKELEISWGLHQIVKALSFLVNDCSLIHNNVCMAAVFVDRAGEWKLGGLDYMYSAQGNGGGPPRKGIPELEQYDPPELADSSGRVVREKWSADMWRLGCLIWEVFNGPLPRAAALRNPGKIPKTLVPHYCELVGANPKVRPNPARFLQNCRAPGGFMSNRFVETNLFLEEIQIKEPAEKQKFFQELSKSLDAFPEDFCRHKVLPQLLTAFEFGNAGAVVLTPLFKVGKFLSAEEYQQKIIPVVVKMFSSTDRAMRIRLLQQMEQFIQYLDEPTVNTQIFPHVVHGFLDTNPAIREQTVKSMLLLAPKLNEANLNVELMKHFARLQAKDEQGPIRCNTTVCLGKIGSYLSASTRHRVLTSAFSRATRDPFAPSRVAGVLGFAATHNLYSMNDCAQKILPVLCGLTVDPEKSVRDQAFKAIRSFLSKLESVSEDP 544
The following BLAST results are available for this feature:
BLAST of TCONS_00007535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCYL17.506e-17649.91N-terminal kinase-like protein OS=Homo sapiens GN=... [more]
back to top