TCONS_00007530 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007530
Unique NameTCONS_00007530
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007530 ID=TCONS_00007530|Name=TCONS_00007530|organism=Clytia hemisphaerica|type=transcript|length=1298bp
CTTACACTTTTAGTAAATCACAAAACTGCTGTCAAATTTATTTCAGACCC
ACGGTACTCAAGATTCTCTGTTTTTCAACAGTCTCAGATCTTGGATACAA
AGGGTCATCAGTTACCAAAAATCCATGGCAAACATTTAGCTTATAACCTT
CAAATACTTGATAACCGTATTGATCTGTTGGGTGACTCTGACCGGAGTGA
TATCCGTAAGAGGGCATGCCGTAACGAAGATTTGTGTTTATAGTACGGGC
CGTAATCGCATCAGCAATGCCACGACGTCTGTGTTCAGGATACGTATACA
TACGTTCTTGAACACCATTTGAAGAAATAGTCATCCACCCAACAATCTCG
TTTGTTTGTTTATGATACGCTCCTATCGTCATCTNTTCTTGAACACCATT
TGAGGAAATAGTCATCCACCCAACAATCTCGTTTGTTTGTTTATGGTACG
CTCCTATCGTCATCCGGTTCTGTATAGCAAATCGAATTTCATCTTGAATC
AATATTGGTTGAAAATGTTTGATCTTGGTATGGAAATCATTCATGTTGCA
AAAACCAATACGGTAATTTTCCAATTCTTGTTCAACAGCTTCGTCTTGGA
TGTTTGTATTCCTGTATGTTAAGAATATAGGTTCCTCAAAAGAGCTTTGT
GGAGGAAATCCAGTTGCAATGAGTAATTGATCAACGATACGTTGGTCTGT
CTCTTGTATGCCTTGACCTTTCTGGTAAACTGATAACAAATCGTTGAAAT
CAGAATCAGTGAGTTGGTCAAAATCCTTGCACCAGACTTGGTAAACATGC
TCATATCCCATTTCCTCCGTATTTGGTTTACAAGTGAGATCATTTATTTG
ATACCCAACTAAAGGGCTTTTAAGCATGATTTTGGTGCTTTTCTCAGCAT
ATGCGTGATCAGAGTAAATCTCAACGAACTGCTTGAAGTAAGGATGTGAG
AGGCTGCCAATAACAGGGATGACAGATGGATCAGTTCTGGAGCACCGCCA
TAAACCTTGCAGGAAAGAGTTTCTCAAACTTCCAGTAATAGACTTCAATT
TCAACATTCTCATTTTCGTAAGTCTTTGATTGCGTTAAAATCCCTCATAA
TAATAACAACGGTTTATAGATAGACGGTAAAGCTTTTCACGAGAGAGCCA
CCAATCTTGTATTTTTGTGGTTAAAATGTCAAAGTGCAAAGGACTTGCAG
CTGCTATGCGTGTTACATCTGTGTTGAATATCTATCAATTCTATAAGACA
ATTCTATAAGTGCAACTTTACACATGATTAACGAGAGCTCGAGAGTTG
Run BLAST on NCBI

protein sequence of TCONS_00007530-protein

>TCONS_00007530-protein ID=TCONS_00007530-protein|Name=TCONS_00007530-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MRMLKLKSITGSLRNSFLQGLWRCSRTDPSVIPVIGSLSHPYFKQFVEIY
SDHAYAEKSTKIMLKSPLVGYQINDLTCKPNTEEMGYEHVYQVWCKDFDQ
LTDSDFNDLLSVYQKGQGIQETDQRIVDQLLIATGFPPQSSFEEPIFLTY
RNTNIQDEAVEQELENYRIGFCNMNDFHTKIKHFQPILIQDEIRFAIQNR
MTIGAYHKQTNEIVGWMTISSNGVQEXMTIGAYHKQTNEIVGWMTISSNG
VQERMYTYPEHRRRGIADAITARTINTNLRYGMPSYGYHSGQSHPTDQYG
YQVFEGYKLNVCHGFLVTDDPLYPRSETVEKQRILSTVGLK
Run BLAST on NCBI

transcript from alignment at sc0000077:720080..721377

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007530 ID=TCONS_00007530|Name=TCONS_00007530|organism=Clytia hemisphaerica|type=transcript|length=1298bp|location=Sequence derived from alignment at sc0000077:720080..721377 (Clytia hemisphaerica)
CAACTCTCGAGCTCTCGTTAATCATGTGTAAAGTTGCACTTATAGAATTG TCTTATAGAATTGATAGATATTCAACACAGATGTAACACGCATAGCAGCT GCAAGTCCTTTGCACTTTGACATTTTAACCACAAAAATACAAGATTGGTG GCTCTCTCGTGAAAAGCTTTACCGTCTATCTATAAACCGTTGTTATTATT ATGAGGGATTTTAACGCAATCAAAGACTTACGAAAATGAGAATGTTGAAA TTGAAGTCTATTACTGGAAGTTTGAGAAACTCTTTCCTGCAAGGTTTATG GCGGTGCTCCAGAACTGATCCATCTGTCATCCCTGTTATTGGCAGCCTCT CACATCCTTACTTCAAGCAGTTCGTTGAGATTTACTCTGATCACGCATAT GCTGAGAAAAGCACCAAAATCATGCTTAAAAGCCCTTTAGTTGGGTATCA AATAAATGATCTCACTTGTAAACCAAATACGGAGGAAATGGGATATGAGC ATGTTTACCAAGTCTGGTGCAAGGATTTTGACCAACTCACTGATTCTGAT TTCAACGATTTGTTATCAGTTTACCAGAAAGGTCAAGGCATACAAGAGAC AGACCAACGTATCGTTGATCAATTACTCATTGCAACTGGATTTCCTCCAC AAAGCTCTTTTGAGGAACCTATATTCTTAACATACAGGAATACAAACATC CAAGACGAAGCTGTTGAACAAGAATTGGAAAATTACCGTATTGGTTTTTG CAACATGAATGATTTCCATACCAAGATCAAACATTTTCAACCAATATTGA TTCAAGATGAAATTCGATTTGCTATACAGAACCGGATGACGATAGGAGCG TACCATAAACAAACAAACGAGATTGTTGGGTGGATGACTATTTCCTCAAA TGGTGTTCAAGAANAGATGACGATAGGAGCGTATCATAAACAAACAAACG AGATTGTTGGGTGGATGACTATTTCTTCAAATGGTGTTCAAGAACGTATG TATACGTATCCTGAACACAGACGTCGTGGCATTGCTGATGCGATTACGGC CCGTACTATAAACACAAATCTTCGTTACGGCATGCCCTCTTACGGATATC ACTCCGGTCAGAGTCACCCAACAGATCAATACGGTTATCAAGTATTTGAA GGTTATAAGCTAAATGTTTGCCATGGATTTTTGGTAACTGATGACCCTTT GTATCCAAGATCTGAGACTGTTGAAAAACAGAGAATCTTGAGTACCGTGG GTCTGAAATAAATTTGACAGCAGTTTTGTGATTTACTAAAAGTGTAAG

Coding sequence (CDS) from alignment at sc0000077:720080..721377

>TCONS_00007530 ID=TCONS_00007530|Name=TCONS_00007530|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0000077:720080..721377 (Clytia hemisphaerica)
ATGAGAATGTTGAAATTGAAGTCTATTACTGGAAGTTTGAGAAACTCTTT
CCTGCAAGGTTTATGGCGGTGCTCCAGAACTGATCCATCTGTCATCCCTG
TTATTGGCAGCCTCTCACATCCTTACTTCAAGCAGTTCGTTGAGATTTAC
TCTGATCACGCATATGCTGAGAAAAGCACCAAAATCATGCTTAAAAGCCC
TTTAGTTGGGTATCAAATAAATGATCTCACTTGTAAACCAAATACGGAGG
AAATGGGATATGAGCATGTTTACCAAGTCTGGTGCAAGGATTTTGACCAA
CTCACTGATTCTGATTTCAACGATTTGTTATCAGTTTACCAGAAAGGTCA
AGGCATACAAGAGACAGACCAACGTATCGTTGATCAATTACTCATTGCAA
CTGGATTTCCTCCACAAAGCTCTTTTGAGGAACCTATATTCTTAACATAC
AGGAATACAAACATCCAAGACGAAGCTGTTGAACAAGAATTGGAAAATTA
CCGTATTGGTTTTTGCAACATGAATGATTTCCATACCAAGATCAAACATT
TTCAACCAATATTGATTCAAGATGAAATTCGATTTGCTATACAGAACCGG
ATGACGATAGGAGCGTACCATAAACAAACAAACGAGATTGTTGGGTGGAT
GACTATTTCCTCAAATGGTGTTCAAGAANAGATGACGATAGGAGCGTATC
ATAAACAAACAAACGAGATTGTTGGGTGGATGACTATTTCTTCAAATGGT
GTTCAAGAACGTATGTATACGTATCCTGAACACAGACGTCGTGGCATTGC
TGATGCGATTACGGCCCGTACTATAAACACAAATCTTCGTTACGGCATGC
CCTCTTACGGATATCACTCCGGTCAGAGTCACCCAACAGATCAATACGGT
TATCAAGTATTTGAAGGTTATAAGCTAAATGTTTGCCATGGATTTTTGGT
AACTGATGACCCTTTGTATCCAAGATCTGAGACTGTTGAAAAACAGAGAA
TCTTGAGTACCGTGGGTCTGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004260XLOC_004260Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007530-proteinTCONS_00007530-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007530-exon-sc0000077-1491911889:720080..721377TCONS_00007530-exon-sc0000077-1491911889:720080..721377Clytia hemisphaericaexon
TCONS_00007530-exon-sc0000077-1510915933:720080..721377TCONS_00007530-exon-sc0000077-1510915933:720080..721377Clytia hemisphaericaexon
TCONS_00007530-exon-sc0000077-1575043694:720080..721377TCONS_00007530-exon-sc0000077-1575043694:720080..721377Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:720080..721377 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0401711 0 0.0811248 0.0964403 0.0442617 0.0347169 0 0 0.0274531 0 0 0 4.55551 3.66921 0 0 0.464507 0.249375 0 0 0 0.138275 0.343139 0.494153 0 0 0.353303 0.193535 2.24701 1.40913
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013653FR47
IPR016181Acyl_CoA_acyltransferase
Vocabulary: Molecular Function
TermDefinition
GO:0016747transferase activity, transferring acyl groups other than amino-acyl groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007530 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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