TCONS_00007526 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007526
Unique NameTCONS_00007526
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length538

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007526 ID=TCONS_00007526|Name=TCONS_00007526|organism=Clytia hemisphaerica|type=transcript|length=538bp
TGTACTTCTTTAAGATGTTAGATGAGAAAATATTATGCCGTTTAAAACCC
TTAAGGAAAATTCAGACGAAATGTACCCTTTTTTACCTAAATTACATCAT
TACACAATGATGATTCACTATGCAGATATTCCACTTTCCTGAGGTGACTG
AggcaaatttcatgaaaaagttttgCAAATCTGTCATTGAATAGTCAATA
CAAATCGGTGTAGCCATTACAAAGAGATAAGGGAAGGCTCAATCGTCTCA
ACGAATTGAGTATTGAAtaatatttgaaattcaaaatacgGCAGTTGATA
AATAAATGATGAATAAGGTGGTTTTCTGACTAGGGTTACAAATTTTGTGT
TAGTTTATTCGTCTATAGCGAGTTGTTAGaataaattttataagaaaatt
taagGTTCTGATTTGGGCTACGAAAGCGAACGAAGGCTTGTTAGGGAAGC
ACAACAGTCTAGGTTGATCGGAAAAGTCCCTTTAGGTAGCAAACTCTTAA
AGACAAGTCTTGATAACTGGAATTCGAATCCCGCACCT
Run BLAST on NCBI

transcript from alignment at sc0000077:659705..660242

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007526 ID=TCONS_00007526|Name=TCONS_00007526|organism=Clytia hemisphaerica|type=transcript|length=538bp|location=Sequence derived from alignment at sc0000077:659705..660242 (Clytia hemisphaerica)
AGGTGCGGGATTCGAATTCCAGTTATCAAGACTTGTCTTTAAGAGTTTGC
TACCTAAAGGGACTTTTCCGATCAACCTAGACTGTTGTGCTTCCCTAACA
AGCCTTCGTTCGCTTTCGTAGCCCAAATCAGAACcttaaattttcttata
aaatttattCTAACAACTCGCTATAGACGAATAAACTAACACAAAATTTG
TAACCCTAGTCAGAAAACCACCTTATTCATCATTTATTTATCAACTGCcg
tattttgaatttcaaatattaTTCAATACTCAATTCGTTGAGACGATTGA
GCCTTCCCTTATCTCTTTGTAATGGCTACACCGATTTGTATTGACTATTC
AATGACAGATTTGcaaaactttttcatgaaatttgccTCAGTCACCTCAG
GAAAGTGGAATATCTGCATAGTGAATCATCATTGTGTAATGATGTAATTT
AGGTAAAAAAGGGTACATTTCGTCTGAATTTTCCTTAAGGGTTTTAAACG
GCATAATATTTTCTCATCTAACATCTTAAAGAAGTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004256XLOC_004256Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007526-exon-sc0000077-1491911889:659705..660242TCONS_00007526-exon-sc0000077-1491911889:659705..660242Clytia hemisphaericaexon
TCONS_00007526-exon-sc0000077-1510915933:659705..660242TCONS_00007526-exon-sc0000077-1510915933:659705..660242Clytia hemisphaericaexon
TCONS_00007526-exon-sc0000077-1575043694:659705..660242TCONS_00007526-exon-sc0000077-1575043694:659705..660242Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:659705..660242 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.21567	0.210312	0	0	0.145422	0.229828	0.970473	0.648961	0.636094	1.35069	0.437006	1.29272	1.57779	1.26615	0.306162	0.262847	0.242854	0.248918	0.917049	0.119953	0.625566	1.52565	0.370925	0.674449	0.231556	0.92996	0	0.157804	0.239377	1.21944
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007526 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top