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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007518 ID=TCONS_00007518|Name=TCONS_00007518|organism=Clytia hemisphaerica|type=transcript|length=1074bp
attcgaataacagagagatttgaattatagagactaagttcgaattagcg
agtgTCCACTATAAATAGGATAAGGAAATAAATCTAGGTCACTGCCATGT
CAACTTTTCTTTGTTTATACACAATAATCAAACAGTCACACAATTCCTAA
AATTTGATTAAGTTGTTTAATATCTAATAAGAATTCAACTTCTCCGACCA
GACATGAGAAAACACATTTTCCCAACATGTTATAACCTAATGGTGATGGG
TGCACATGGTCCGGTTGCCAATAGTAACTACCCGGAAGAAGCAGTGGAAA
GCACTGTTCCGTATCACAAACGGACGTGTCCGTAGAATTGATAGACCGTA
TTTGAGTATTTGTTCTCTCGCGCATTACTTCGAAAACGTCTTCTGTGATA
AATTTTAACTTATCGGCGCCCGGTTCCGAGGGTAATAATGTCATAGCAAC
AGTGCGAAGTGCACCCTGATCAAGCGCCAAAGTGTGCAAATCGATTAATT
TTTCGAATAAGTCTTCATTGTCTTTAAGTGTAAGTTTAATGAGATCGTTA
ATACCAGCCATTATAATAACAAGGTCAAATTTTTCTCTTGACAGTTCACG
CTCCAAGCGCTCACGCATTTTCCCGTGTACCATGTCACCGCCACGGCCGC
GCGTGAAAATGCGCACGTAAACATCTGGGTACCGGCGTGTCAATGCAGTT
CTGAGGGCCATGGTGTAAGGGTAAAATATACCATTTAGTCCGTAATATCC
TTGAGTTATAGAATCTCCCATACATAAAATACATAATGTCTTTTCATCCG
AGCAATTCTGTCGTTGGCGATCTACGAACGTCTCAACACTTCTTAatata
aataaacaaataaacatCAACAATACAAACAAACAACATTTTAACATTTC
GAGACAAACGTAAacaaaatttgtacaaaaacaaaacaaaacattcgaat
gtaataATTACATCTTAATTGtatgttttattgttttcttttgaaatcta
CTTTATGCTGAAAATGAGCTTTCGAATTTTtcgaatgaaaacaaaatttt
tttgaaagaagctttgattttaat Run BLAST on NCBI protein sequence of TCONS_00007518-protein >TCONS_00007518-protein ID=TCONS_00007518-protein|Name=TCONS_00007518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MLKCCLFVLLMFICLFILRSVETFVDRQRQNCSDEKTLCILCMGDSITQG
YYGLNGIFYPYTMALRTALTRRYPDVYVRIFTRGRGGDMVHGKMRERLER
ELSREKFDLVIIMAGINDLIKLTLKDNEDLFEKLIDLHTLALDQGALRTV
AMTLLPSEPGADKLKFITEDVFEVMRERTNTQIRSINSTDTSVCDTEQCF
PLLLPGSYYWQPDHVHPSPLGYNMLGKCVFSCLVGEVEFLLDIKQLNQIL
GIV Run BLAST on NCBI transcript from alignment at sc0000077:428889..429962 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007518 ID=TCONS_00007518|Name=TCONS_00007518|organism=Clytia hemisphaerica|type=transcript|length=1074bp|location=Sequence derived from alignment at sc0000077:428889..429962 (Clytia hemisphaerica)
attaaaatcaaagcttctttcaaaaaaattttgttttcattcgaAAAATT
CGAAAGCTCATTTTCAGCATAAAGtagatttcaaaagaaaacaataaaac
ataCAATTAAGATGTAATtattacattcgaatgttttgttttgtttttgt
acaaattttgtTTACGTTTGTCTCGAAATGTTAAAATGTTGTTTGTTTGT
ATTGTTGatgtttatttgtttatttatatTAAGAAGTGTTGAGACGTTCG
TAGATCGCCAACGACAGAATTGCTCGGATGAAAAGACATTATGTATTTTA
TGTATGGGAGATTCTATAACTCAAGGATATTACGGACTAAATGGTATATT
TTACCCTTACACCATGGCCCTCAGAACTGCATTGACACGCCGGTACCCAG
ATGTTTACGTGCGCATTTTCACGCGCGGCCGTGGCGGTGACATGGTACAC
GGGAAAATGCGTGAGCGCTTGGAGCGTGAACTGTCAAGAGAAAAATTTGA
CCTTGTTATTATAATGGCTGGTATTAACGATCTCATTAAACTTACACTTA
AAGACAATGAAGACTTATTCGAAAAATTAATCGATTTGCACACTTTGGCG
CTTGATCAGGGTGCACTTCGCACTGTTGCTATGACATTATTACCCTCGGA
ACCGGGCGCCGATAAGTTAAAATTTATCACAGAAGACGTTTTCGAAGTAA
TGCGCGAGAGAACAAATACTCAAATACGGTCTATCAATTCTACGGACACG
TCCGTTTGTGATACGGAACAGTGCTTTCCACTGCTTCTTCCGGGTAGTTA
CTATTGGCAACCGGACCATGTGCACCCATCACCATTAGGTTATAACATGT
TGGGAAAATGTGTTTTCTCATGTCTGGTCGGAGAAGTTGAATTCTTATTA
GATATTAAACAACTTAATCAAATTTTAGGAATTGTGTGACTGTTTGATTA
TTGTGTATAAACAAAGAAAAGTTGACATGGCAGTGACCTAGATTTATTTC
CTTATCCTATTTATAGTGGAcactcgctaattcgaacttagtctctataa
ttcaaatctctctgttattcgaat Coding sequence (CDS) from alignment at sc0000077:428889..429962 >TCONS_00007518 ID=TCONS_00007518|Name=TCONS_00007518|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0000077:428889..429962 (Clytia hemisphaerica)
ATGTTAAAATGTTGTTTGTTTGTATTGTTGatgtttatttgtttatttat
atTAAGAAGTGTTGAGACGTTCGTAGATCGCCAACGACAGAATTGCTCGG
ATGAAAAGACATTATGTATTTTATGTATGGGAGATTCTATAACTCAAGGA
TATTACGGACTAAATGGTATATTTTACCCTTACACCATGGCCCTCAGAAC
TGCATTGACACGCCGGTACCCAGATGTTTACGTGCGCATTTTCACGCGCG
GCCGTGGCGGTGACATGGTACACGGGAAAATGCGTGAGCGCTTGGAGCGT
GAACTGTCAAGAGAAAAATTTGACCTTGTTATTATAATGGCTGGTATTAA
CGATCTCATTAAACTTACACTTAAAGACAATGAAGACTTATTCGAAAAAT
TAATCGATTTGCACACTTTGGCGCTTGATCAGGGTGCACTTCGCACTGTT
GCTATGACATTATTACCCTCGGAACCGGGCGCCGATAAGTTAAAATTTAT
CACAGAAGACGTTTTCGAAGTAATGCGCGAGAGAACAAATACTCAAATAC
GGTCTATCAATTCTACGGACACGTCCGTTTGTGATACGGAACAGTGCTTT
CCACTGCTTCTTCCGGGTAGTTACTATTGGCAACCGGACCATGTGCACCC
ATCACCATTAGGTTATAACATGTTGGGAAAATGTGTTTTCTCATGTCTGG
TCGGAGAAGTTGAATTCTTATTAGATATTAAACAACTTAATCAAATTTTA
GGAATTGTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007518-exon-sc0000077-1491911889:428889..429962 | TCONS_00007518-exon-sc0000077-1491911889:428889..429962 | Clytia hemisphaerica | exon |
| TCONS_00007518-exon-sc0000077-1510915933:428889..429962 | TCONS_00007518-exon-sc0000077-1510915933:428889..429962 | Clytia hemisphaerica | exon |
| TCONS_00007518-exon-sc0000077-1575043694:428889..429962 | TCONS_00007518-exon-sc0000077-1575043694:428889..429962 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000077 | supercontig | sc0000077:428889..429962 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
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