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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007515 ID=TCONS_00007515|Name=TCONS_00007515|organism=Clytia hemisphaerica|type=transcript|length=2179bp
ACAGTTTCAAAGTCATggattttataagaaaaattagaaatgacaTTTCA
GCTAAGTTTTCTCATTAGATGGGAAAACAtggcaaaaaataataaattcc
cTCTGTCTAAAGAGAAATTTGTACGATAAAAATAAGCAAAGATGTTTTCG
TTTTTATCCACTAGATTATGGGCAGAAAACACCATTAGTATAATGTGATC
GGGCATTTCAGTTTGACCAttccaaaaaagtttttaaaatatccATGTAC
GCACTCACgaacacaaaaaaaaatcaacattcagattttgaaattgaata
cCAAAGAAAATCATAAAAGAACCAGCTCTTATTTTCTCCAATCTTTTTTT
ACACTTCTGTCTGAATATTTACTTTAGTTAATTGCTATATATCCGTCTTC
AAGGTCCGGCTGGGACCTTTGATACATGAATTTGTACGTATATTACAGAG
AATTTCAACGCGTTACTAGGCAACAACCAGGTACTCGAAACACGAATCTC
TCTCTTAAAGTATACACAGTCAACCATAATCACGATATTTGTTGATATTT
GTACAAGCGTTTGTACAGTTCTGATCAATCATCTtggattattttgaata
aattaattCCATTTATCACTATACAATAAATCTGGTGAATCACGAAGAAC
AATTGATTGCAATTTGTTTTTTGGTGATGCTGTCGCGGATAGGAGTAATC
CAATCCGTCAGCCTTTCTTTAGGCAATTTTTCTCTCCTCTAAAacacttt
caaaccaaagagcAGCATACACTGGAAGTGCCCGGAACTGAACCGACAGT
GCCGTTCATAGCCGCTCCAATGACGGTTGCCGAAGGGTTGACGGTCGGTG
TTTTAACAACGTCAGGGGTCTCATTTGTCTGGCTAACGTCATTAACTGGT
GATTCTGGGATGTATTTAGACGACGTATCGCTAGACTTTTTGACGGCAGC
TGACAGCGTCGGTGAGATCGGAAAAGTATCAATTTCACTATCAGAACTTG
CGATGTTGATGTCAGAGAAGCTTTTGGTGACGGATTCATTGTTGGTGGAT
ATCGGATCTTCCTCGTGTATGGTGGCTGACAGTGATATGGGCGAGACAGT
TTTACTACCACCTTTTGTGCGTTTCAAATACTTAAAAATCATTTCCTTAG
TTTTGAAAATGTCTGAAGGAATAATgtgttgttttttcttacagAACTTT
TTGACGAGATTGGTATCGCTGCTACTTTTGCTTTGATGACGGTAAGTGTT
GCCGGACAACGgtgaattttttatcttctcagCTGCTAATGCAAGTTGTA
GCTGCATAGAATAAGTTGTCAAGTTTGTGTCACTTAAATGACGCCCGTAC
GCGTTATTTACAAGATTCTTAAGCATAACTTTAGATGAAGTCTTTGTTGA
AATTTGTTCTAAATCTTCGAGTAGAAGAGATAACATTTTAGCACTGATAT
TATCTAGAGAAGTTGCTTTATGTGTTTTTGTGGAAGTGTTATTAGTCTGT
GTGTTGGAAGAGGTAGAGTTCGTGTTATTTTCCGACGATTTATCATTTGT
CGGTGTTGAGACGTTTGAAGGGGAAGATGACGAGTGAGAGAGAATCTTTT
TGTCGAGCCACGGGATATGAGAGTCGTCGTCATCCGAAGATGAATACGAC
GAACGACGACTATGAATGGGCGACAGTCGACAAGACGAATTAAAAGTCTG
ACGTCGCGGTTGCGTCTTTCTGGTAATGACGGGAGAGTTGCGCGGACTTT
CGGCTTCAGATTCGTTCTCTTCTGTGATTGGTTCGTTAATTGGAAGCAAG
GAAGGTGAACTTTGGCTTTTGTTGCGCGGAGGGAAAGGGTAGGTCATGCG
GCCTAAGCGATTTGTGAGCGGTTTAAGGACGAACTCACCAGCCGGAGCAC
CGTCTTCTTGCGTCTCGTCACAAAGTGTTTCGTCGGAATGCGAAAGTTCG
TTTGTTAAATCACTAGTCGTCGGTAACGACGACGAATTGTCGGTTTCATC
AAACGATAAGACGTTAGTTGGCGTTCGTGTGACGGATGAATCAGATGTGA
TGGGTGTGCACGGGGTGTTGGTGTTGGTGGGAGGGTTAAGGACACTGGTT
GATGACTTGCTTTCTGGAGTAGATACAGTGGAGATGGCACGCGATTTGCT
TTCTGGAATGTCACTGGTACTGATGGATC Run BLAST on NCBI protein sequence of TCONS_00007515-protein >TCONS_00007515-protein ID=TCONS_00007515-protein|Name=TCONS_00007515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp
SISTSDIPESKSRAISTVSTPESKSSTSVLNPPTNTNTPCTPITSDSSVT
RTPTNVLSFDETDNSSSLPTTSDLTNELSHSDETLCDETQEDGAPAGEFV
LKPLTNRLGRMTYPFPPRNKSQSSPSLLPINEPITEENESEAESPRNSPV
ITRKTQPRRQTFNSSCRLSPIHSRRSSYSSSDDDDSHIPWLDKKILSHSS
SSPSNVSTPTNDKSSENNTNSTSSNTQTNNTSTKTHKATSLDNISAKMLS
LLLEDLEQISTKTSSKVMLKNLVNNAYGRHLSDTNLTTYSMQLQLALAAE
KIKNSPLSGNTYRHQSKSSSDTNLVKKFCKKKQHIIPSDIFKTKEMIFKY
LKRTKGGSKTVSPISLSATIHEEDPISTNNESVTKSFSDINIASSDSEID
TFPISPTLSAAVKKSSDTSSKYIPESPVNDVSQTNETPDVVKTPTVNPSA
TVIGAAMNGTVGSVPGTSSVCCSLV Run BLAST on NCBI transcript from alignment at sc0000077:323275..325453 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007515 ID=TCONS_00007515|Name=TCONS_00007515|organism=Clytia hemisphaerica|type=transcript|length=2179bp|location=Sequence derived from alignment at sc0000077:323275..325453 (Clytia hemisphaerica)
GATCCATCAGTACCAGTGACATTCCAGAAAGCAAATCGCGTGCCATCTCC
ACTGTATCTACTCCAGAAAGCAAGTCATCAACCAGTGTCCTTAACCCTCC
CACCAACACCAACACCCCGTGCACACCCATCACATCTGATTCATCCGTCA
CACGAACGCCAACTAACGTCTTATCGTTTGATGAAACCGACAATTCGTCG
TCGTTACCGACGACTAGTGATTTAACAAACGAACTTTCGCATTCCGACGA
AACACTTTGTGACGAGACGCAAGAAGACGGTGCTCCGGCTGGTGAGTTCG
TCCTTAAACCGCTCACAAATCGCTTAGGCCGCATGACCTACCCTTTCCCT
CCGCGCAACAAAAGCCAAAGTTCACCTTCCTTGCTTCCAATTAACGAACC
AATCACAGAAGAGAACGAATCTGAAGCCGAAAGTCCGCGCAACTCTCCCG
TCATTACCAGAAAGACGCAACCGCGACGTCAGACTTTTAATTCGTCTTGT
CGACTGTCGCCCATTCATAGTCGTCGTTCGTCGTATTCATCTTCGGATGA
CGACGACTCTCATATCCCGTGGCTCGACAAAAAGATTCTCTCTCACTCGT
CATCTTCCCCTTCAAACGTCTCAACACCGACAAATGATAAATCGTCGGAA
AATAACACGAACTCTACCTCTTCCAACACACAGACTAATAACACTTCCAC
AAAAACACATAAAGCAACTTCTCTAGATAATATCAGTGCTAAAATGTTAT
CTCTTCTACTCGAAGATTTAGAACAAATTTCAACAAAGACTTCATCTAAA
GTTATGCTTAAGAATCTTGTAAATAACGCGTACGGGCGTCATTTAAGTGA
CACAAACTTGACAACTTATTCTATGCAGCTACAACTTGCATTAGCAGctg
agaagataaaaaattcacCGTTGTCCGGCAACACTTACCGTCATCAAAGC
AAAAGTAGCAGCGATACCAATCTCGTCAAAAAGTTctgtaagaaaaaaca
acacATTATTCCTTCAGACATTTTCAAAACTAAGGAAATGATTTTTAAGT
ATTTGAAACGCACAAAAGGTGGTAGTAAAACTGTCTCGCCCATATCACTG
TCAGCCACCATACACGAGGAAGATCCGATATCCACCAACAATGAATCCGT
CACCAAAAGCTTCTCTGACATCAACATCGCAAGTTCTGATAGTGAAATTG
ATACTTTTCCGATCTCACCGACGCTGTCAGCTGCCGTCAAAAAGTCTAGC
GATACGTCGTCTAAATACATCCCAGAATCACCAGTTAATGACGTTAGCCA
GACAAATGAGACCCCTGACGTTGTTAAAACACCGACCGTCAACCCTTCGG
CAACCGTCATTGGAGCGGCTATGAACGGCACTGTCGGTTCAGTTCCGGGC
ACTTCCAGTGTATGCTgctctttggtttgaaagtgtTTTAGAGGAGAGAA
AAATTGCCTAAAGAAAGGCTGACGGATTGGATTACTCCTATCCGCGACAG
CATCACCAAAAAACAAATTGCAATCAATTGTTCTTCGTGATTCACCAGAT
TTATTGTATAGTGATAAATGGaattaatttattcaaaataatccaAGATG
ATTGATCAGAACTGTACAAACGCTTGTACAAATATCAACAAATATCGTGA
TTATGGTTGACTGTGTATACTTTAAGAGAGAGATTCGTGTTTCGAGTACC
TGGTTGTTGCCTAGTAACGCGTTGAAATTCTCTGTAATATACGTACAAAT
TCATGTATCAAAGGTCCCAGCCGGACCTTGAAGACGGATATATAGCAATT
AACTAAAGTAAATATTCAGACAGAAGTGTAAAAAAAGATTGGAGAAAATA
AGAGCTGGTTCTTTTATGATTTTCTTTGgtattcaatttcaaaatctgaa
tgttgatttttttttgtgttcGTGAGTGCGTACATggatattttaaaaac
ttttttggaaTGGTCAAACTGAAATGCCCGATCACATTATACTAATGGTG
TTTTCTGCCCATAATCTAGTGGATAAAAACGAAAACATCTTTGCTTATTT
TTATCGTACAAATTTCTCTTTAGACAGAgggaatttattattttttgcca
TGTTTTCCCATCTAATGAGAAAACTTAGCTGAAAtgtcatttctaatttt
tcttataaaatccATGACTTTGAAACTGT Coding sequence (CDS) from alignment at sc0000077:323275..325453 >TCONS_00007515 ID=TCONS_00007515|Name=TCONS_00007515|organism=Clytia hemisphaerica|type=CDS|length=1428bp|location=Sequence derived from alignment at sc0000077:323275..325453 (Clytia hemisphaerica)
TCCATCAGTACCAGTGACATTCCAGAAAGCAAATCGCGTGCCATCTCCAC
TGTATCTACTCCAGAAAGCAAGTCATCAACCAGTGTCCTTAACCCTCCCA
CCAACACCAACACCCCGTGCACACCCATCACATCTGATTCATCCGTCACA
CGAACGCCAACTAACGTCTTATCGTTTGATGAAACCGACAATTCGTCGTC
GTTACCGACGACTAGTGATTTAACAAACGAACTTTCGCATTCCGACGAAA
CACTTTGTGACGAGACGCAAGAAGACGGTGCTCCGGCTGGTGAGTTCGTC
CTTAAACCGCTCACAAATCGCTTAGGCCGCATGACCTACCCTTTCCCTCC
GCGCAACAAAAGCCAAAGTTCACCTTCCTTGCTTCCAATTAACGAACCAA
TCACAGAAGAGAACGAATCTGAAGCCGAAAGTCCGCGCAACTCTCCCGTC
ATTACCAGAAAGACGCAACCGCGACGTCAGACTTTTAATTCGTCTTGTCG
ACTGTCGCCCATTCATAGTCGTCGTTCGTCGTATTCATCTTCGGATGACG
ACGACTCTCATATCCCGTGGCTCGACAAAAAGATTCTCTCTCACTCGTCA
TCTTCCCCTTCAAACGTCTCAACACCGACAAATGATAAATCGTCGGAAAA
TAACACGAACTCTACCTCTTCCAACACACAGACTAATAACACTTCCACAA
AAACACATAAAGCAACTTCTCTAGATAATATCAGTGCTAAAATGTTATCT
CTTCTACTCGAAGATTTAGAACAAATTTCAACAAAGACTTCATCTAAAGT
TATGCTTAAGAATCTTGTAAATAACGCGTACGGGCGTCATTTAAGTGACA
CAAACTTGACAACTTATTCTATGCAGCTACAACTTGCATTAGCAGctgag
aagataaaaaattcacCGTTGTCCGGCAACACTTACCGTCATCAAAGCAA
AAGTAGCAGCGATACCAATCTCGTCAAAAAGTTctgtaagaaaaaacaac
acATTATTCCTTCAGACATTTTCAAAACTAAGGAAATGATTTTTAAGTAT
TTGAAACGCACAAAAGGTGGTAGTAAAACTGTCTCGCCCATATCACTGTC
AGCCACCATACACGAGGAAGATCCGATATCCACCAACAATGAATCCGTCA
CCAAAAGCTTCTCTGACATCAACATCGCAAGTTCTGATAGTGAAATTGAT
ACTTTTCCGATCTCACCGACGCTGTCAGCTGCCGTCAAAAAGTCTAGCGA
TACGTCGTCTAAATACATCCCAGAATCACCAGTTAATGACGTTAGCCAGA
CAAATGAGACCCCTGACGTTGTTAAAACACCGACCGTCAACCCTTCGGCA
ACCGTCATTGGAGCGGCTATGAACGGCACTGTCGGTTCAGTTCCGGGCAC
TTCCAGTGTATGCTgctctttggtttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007515-exon-sc0000077-1491911889:323275..325453 | TCONS_00007515-exon-sc0000077-1491911889:323275..325453 | Clytia hemisphaerica | exon |
| TCONS_00007515-exon-sc0000077-1510915933:323275..325453 | TCONS_00007515-exon-sc0000077-1510915933:323275..325453 | Clytia hemisphaerica | exon |
| TCONS_00007515-exon-sc0000077-1575043694:323275..325453 | TCONS_00007515-exon-sc0000077-1575043694:323275..325453 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000077 | supercontig | sc0000077:323275..325453 . |
Blast
The following BLAST results are available for this feature:
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